Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47451 * 2 1 4 4 N 1.46894 * 109.47389 * 180.15153 * 3 2 1 5 5 C 1.46901 * 111.00101 * 297.82752 * 4 3 2 6 6 C 1.50691 * 109.47352 * 294.31600 * 5 4 3 7 7 H 1.08009 * 120.00188 * 354.91766 * 6 5 4 8 8 C 1.37877 * 120.00590 * 174.91866 * 6 5 4 9 9 N 1.31519 * 119.99573 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00633 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46786 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46945 * 119.99944 * 10 8 6 13 13 H 1.48494 * 109.47308 * 240.00099 * 10 8 6 14 14 C 1.46902 * 111.00145 * 61.78060 * 4 3 2 15 15 C 1.50701 * 109.46735 * 66.04459 * 14 4 3 16 16 C 1.39872 * 126.04085 * 90.03005 * 15 14 4 17 17 N 1.30832 * 108.20487 * 179.97438 * 16 15 14 18 18 N 1.40084 * 108.20725 * 359.97438 * 17 16 15 19 19 C 1.46503 * 126.03881 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47284 * 305.03159 * 19 18 17 21 21 O 1.42899 * 109.46937 * 179.97438 * 20 19 18 22 22 C 1.42895 * 114.00109 * 179.97438 * 21 20 19 23 23 C 1.34955 * 107.92198 * 359.75981 * 18 17 16 24 24 H 1.08998 * 109.47275 * 59.99800 * 1 2 3 25 25 H 1.08998 * 109.47626 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46714 * 300.00084 * 1 2 3 27 27 H 1.08999 * 109.47255 * 240.00263 * 2 1 3 28 28 H 1.09006 * 109.47353 * 119.99869 * 2 1 3 29 29 H 1.08997 * 109.47253 * 300.15810 * 3 2 1 30 30 H 1.09007 * 109.46806 * 60.15483 * 3 2 1 31 31 H 1.09003 * 109.47028 * 54.31955 * 5 4 3 32 32 H 1.09002 * 109.47187 * 174.31534 * 5 4 3 33 33 H 0.97001 * 119.99822 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47508 * 186.04170 * 14 4 3 35 35 H 1.09002 * 109.46933 * 306.05240 * 14 4 3 36 36 H 1.08004 * 125.89815 * 359.94695 * 16 15 14 37 37 H 1.08999 * 109.46327 * 65.03337 * 19 18 17 38 38 H 1.09001 * 109.46709 * 185.02741 * 19 18 17 39 39 H 1.09001 * 109.47121 * 299.99169 * 20 19 18 40 40 H 1.08995 * 109.47296 * 59.99471 * 20 19 18 41 41 H 1.08999 * 109.47246 * 59.99960 * 22 21 20 42 42 H 1.08998 * 109.47349 * 179.97438 * 22 21 20 43 43 H 1.08997 * 109.47318 * 300.00066 * 22 21 20 44 44 H 1.07999 * 126.12279 * 180.23790 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0037 5 6 4.0385 0.8012 1.2073 6 6 3.6754 1.6283 2.4135 7 1 3.1801 2.5797 2.2867 8 6 3.9753 1.1706 3.6790 9 7 4.5779 0.0118 3.8335 10 14 3.5258 2.1962 5.1742 11 1 2.8599 3.4483 4.7335 12 1 2.6022 1.4246 6.0442 13 1 4.7574 2.5307 5.9334 14 6 4.0324 0.7950 -1.2140 15 6 3.6709 1.6208 -2.4217 16 6 4.4389 2.6510 -2.9741 17 7 3.7982 3.1278 -4.0104 18 7 2.6007 2.4146 -4.1508 19 6 1.5861 2.6290 -5.1857 20 6 1.1443 4.0937 -5.1711 21 8 0.1550 4.3029 -6.1809 22 6 -0.3281 5.6458 -6.2519 23 6 2.5490 1.4920 -3.1673 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6744 1.9571 -0.8885 30 1 1.6790 1.9555 0.8914 31 1 3.6093 -0.1958 1.3077 32 1 5.1232 0.7239 1.1329 33 1 4.7892 -0.3100 4.7238 34 1 5.1168 0.7124 -1.1418 35 1 3.5977 -0.1999 -1.3107 36 1 5.3954 2.9940 -2.6082 37 1 2.0058 2.3857 -6.1617 38 1 0.7264 1.9882 -4.9898 39 1 0.7246 4.3370 -4.1950 40 1 2.0040 4.7345 -5.3668 41 1 0.5010 6.3192 -6.4695 42 1 -1.0746 5.7221 -7.0425 43 1 -0.7788 5.9208 -5.2984 44 1 1.7533 0.7805 -3.0029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139782662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = 33.788908 kcal Electronic energy + Delta-G solvation = -22288.102965 eV Core-core repulsion = 19049.619615 eV Total energy + Delta-G solvation = -3238.483351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06539 -38.26682 -37.32188 -33.90259 -32.78083 -32.05347 -30.33014 -29.46282 -27.03594 -26.55907 -25.68931 -23.70102 -23.29603 -22.04810 -20.62300 -20.25481 -18.97909 -17.24372 -16.52336 -16.22477 -15.86404 -15.60827 -15.06830 -14.75627 -14.59815 -14.27722 -13.85013 -13.69186 -13.49669 -13.24277 -12.69528 -12.64075 -12.27299 -12.07698 -11.80582 -11.63237 -11.52020 -11.25619 -10.96418 -10.95784 -10.81435 -10.62076 -10.49646 -10.30352 -10.03693 -9.89646 -9.68455 -9.22121 -9.14634 -8.40406 -8.15201 -7.03266 -5.98766 -3.99038 2.01801 2.42633 3.08569 3.32669 3.40446 3.45494 3.54682 4.44374 4.47180 4.66068 4.94694 4.98820 5.01195 5.03107 5.12042 5.27655 5.31899 5.36884 5.41500 5.45631 5.52544 5.55333 5.65478 5.82150 5.87269 6.12854 6.13498 6.19486 6.37217 6.44083 6.52543 6.55229 6.69178 6.79882 6.89908 7.00373 7.15896 7.39001 7.49210 7.87022 7.89249 8.17147 8.29423 8.63809 9.09891 9.65001 11.11804 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020713 B = 0.003573 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.455297 B = 7834.419509 C = 7993.181550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.070 3.930 4 N -0.531 5.531 5 C 0.188 3.812 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.123 3.877 15 C -0.203 4.203 16 C 0.069 3.931 17 N -0.307 5.307 18 N -0.381 5.381 19 C 0.143 3.857 20 C 0.051 3.949 21 O -0.393 6.393 22 C 0.034 3.966 23 C 0.054 3.946 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.002 0.998 32 H 0.025 0.975 33 H 0.259 0.741 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.183 0.817 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.233 4.202 -17.704 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.059 4.059 4 N -0.254 5.254 5 C 0.063 3.937 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.006 4.006 15 C -0.215 4.215 16 C -0.117 4.117 17 N -0.128 5.128 18 N -0.165 5.165 19 C 0.021 3.979 20 C -0.026 4.026 21 O -0.311 6.311 22 C -0.062 4.062 23 C -0.091 4.091 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.020 0.980 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.200 0.800 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.157 5.317 -18.739 21.118 hybrid contribution -0.472 -0.731 1.813 2.011 sum -8.629 4.586 -16.926 19.545 Atomic orbital electron populations 1.21654 0.96678 1.00580 1.01105 1.22188 0.95317 1.00694 1.02120 1.21989 0.88744 0.94076 1.01107 1.62320 1.06287 1.54745 1.02015 1.19785 0.95041 0.93304 0.85540 1.21192 1.37797 1.04942 0.90014 0.91979 1.24967 0.95536 0.95112 0.98996 1.69967 1.42124 1.19325 1.22535 0.86507 0.78085 0.80383 0.82847 1.19720 1.21227 1.21088 1.20358 0.99776 0.93169 0.87300 1.20167 0.96493 1.03484 1.01330 1.23807 1.00118 0.95010 0.92791 1.77262 0.94537 1.19512 1.21510 1.48250 1.16261 1.27881 1.24131 1.21240 0.89377 0.96631 0.90631 1.22695 0.91870 0.96489 0.91594 1.87761 1.57944 1.29255 1.56158 1.22759 0.98880 0.82854 1.01732 1.22295 1.00325 0.95822 0.90651 0.93774 0.93655 0.92739 0.93112 0.90563 0.93184 0.90477 0.98021 0.95720 0.93101 0.90807 0.94938 0.80050 0.89313 0.88119 0.92561 0.91639 0.93801 0.89349 0.93802 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.16 -2.82 5.28 -26.73 -0.14 -2.96 16 3 C 0.07 1.32 4.90 -3.83 -0.02 1.30 16 4 N -0.53 -11.10 4.70 -237.52 -1.12 -12.22 16 5 C 0.19 4.75 4.51 -4.98 -0.02 4.72 16 6 C -0.50 -13.83 8.37 -34.44 -0.29 -14.12 16 7 H 0.06 1.73 7.29 -52.48 -0.38 1.35 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 10 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.12 2.16 5.23 -4.97 -0.03 2.14 16 15 C -0.20 -3.17 4.98 -105.05 -0.52 -3.70 16 16 C 0.07 1.06 11.96 -17.37 -0.21 0.86 16 17 N -0.31 -4.69 12.42 30.62 0.38 -4.31 16 18 N -0.38 -5.05 3.68 -61.36 -0.23 -5.27 16 19 C 0.14 1.45 6.88 -4.04 -0.03 1.42 16 20 C 0.05 0.53 6.12 37.16 0.23 0.75 16 21 O -0.39 -3.95 10.70 -35.23 -0.38 -4.33 16 22 C 0.03 0.25 11.01 101.05 1.11 1.36 16 23 C 0.05 0.74 9.95 -17.22 -0.17 0.57 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.80 6.31 -51.93 -0.33 0.48 16 28 H 0.08 1.57 6.34 -51.93 -0.33 1.24 16 29 H 0.05 0.87 6.23 -51.93 -0.32 0.55 16 30 H 0.08 1.64 6.88 -51.93 -0.36 1.28 16 31 H 0.00 0.05 6.09 -51.93 -0.32 -0.26 16 32 H 0.02 0.67 7.94 -51.93 -0.41 0.26 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.07 1.30 7.94 -51.93 -0.41 0.89 16 35 H 0.03 0.56 6.05 -51.93 -0.31 0.24 16 36 H 0.18 2.47 8.06 -52.48 -0.42 2.05 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.82 8.07 -51.93 -0.42 0.40 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -31.06 357.04 -7.44 -38.50 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.38 Total: -0.76 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 0.18 Total: -7.89 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.22 Total: -47.48 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.38 Total: -4.33 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.06 -7.44 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139782662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.290 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds