Wall clock time and date at job start Tue Mar 31 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46854 * 2 1 4 4 C 1.53001 * 109.46854 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47227 * 179.97438 * 4 3 2 6 6 C 1.37098 * 120.00021 * 94.46829 * 5 4 3 7 7 H 1.07995 * 119.99892 * 213.81871 * 6 5 4 8 8 C 1.38956 * 120.00032 * 33.81380 * 6 5 4 9 9 N 1.31415 * 119.99575 * 22.68299 * 8 6 5 10 10 Si 1.86792 * 120.00119 * 202.68382 * 8 6 5 11 11 H 1.48512 * 109.46877 * 270.00215 * 10 8 6 12 12 H 1.48495 * 109.47424 * 29.99809 * 10 8 6 13 13 H 1.48497 * 109.47253 * 150.00392 * 10 8 6 14 14 C 1.34778 * 119.99948 * 274.47004 * 5 4 3 15 15 O 1.21287 * 119.99770 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.99634 * 179.97438 * 14 5 4 17 17 H 1.08996 * 110.70466 * 43.31673 * 16 14 5 18 18 C 1.55110 * 110.78949 * 279.99616 * 16 14 5 19 19 C 1.54549 * 102.62159 * 281.50724 * 18 16 14 20 20 H 1.09008 * 112.36307 * 98.67465 * 19 18 16 21 21 C 1.54226 * 108.89897 * 223.81296 * 19 18 16 22 22 N 1.49550 * 104.09974 * 136.17093 * 21 19 18 23 23 C 1.48488 * 104.54633 * 320.57860 * 22 21 19 24 24 C 1.54359 * 104.83044 * 39.14531 * 23 22 21 25 25 H 1.08998 * 111.86775 * 98.34096 * 24 23 22 26 26 N 1.48018 * 108.63401 * 223.20048 * 24 23 22 27 27 H 1.09003 * 109.47410 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46897 * 300.00041 * 1 2 3 29 29 H 1.08995 * 109.47292 * 59.99740 * 1 2 3 30 30 H 1.08998 * 109.47203 * 240.00233 * 2 1 3 31 31 H 1.09001 * 109.46810 * 119.99530 * 2 1 3 32 32 H 1.09005 * 109.47402 * 60.00268 * 3 2 1 33 33 H 1.08995 * 109.47383 * 300.00204 * 3 2 1 34 34 H 1.08998 * 109.47203 * 60.00233 * 4 3 2 35 35 H 1.09005 * 109.47270 * 299.99714 * 4 3 2 36 36 H 0.97006 * 119.99949 * 179.97438 * 9 8 6 37 37 H 1.09006 * 110.78015 * 39.79258 * 18 16 14 38 38 H 1.09001 * 110.78239 * 163.03299 * 18 16 14 39 39 H 1.09004 * 110.41448 * 255.29233 * 21 19 18 40 40 H 1.08996 * 110.41351 * 17.73950 * 21 19 18 41 41 H 1.00904 * 110.60718 * 80.12809 * 22 21 19 42 42 H 1.08993 * 110.36739 * 280.30046 * 23 22 21 43 43 H 1.09007 * 110.36590 * 157.98050 * 23 22 21 44 44 H 1.00902 * 111.00020 * 18.23221 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3745 3.4396 1.1821 7 1 4.2054 4.4995 1.3013 8 6 4.9125 2.6999 2.2282 9 7 5.5262 1.5641 1.9822 10 14 4.7634 3.3199 3.9839 11 1 5.9369 4.1697 4.3101 12 1 3.5197 4.1191 4.1228 13 1 4.7155 2.1639 4.9147 14 6 4.1967 3.4891 -1.1652 15 8 3.9174 2.9441 -2.2121 16 6 4.6985 4.9101 -1.1657 17 1 5.5390 5.0222 -0.4808 18 6 3.5579 5.8969 -0.8035 19 6 2.7700 6.0034 -2.1288 20 1 1.8878 5.3633 -2.1395 21 6 2.4236 7.4840 -2.3863 22 7 2.7202 7.6803 -3.8389 23 6 3.9636 6.9034 -4.0740 24 6 3.7939 5.6216 -3.2307 25 1 3.4486 4.7818 -3.8336 26 7 5.0717 5.3373 -2.5399 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9289 -0.8909 35 1 3.9337 0.9286 0.8892 36 1 5.9021 1.0479 2.7124 37 1 2.9297 5.4881 -0.0120 38 1 3.9629 6.8659 -0.5120 39 1 1.3705 7.6704 -2.1751 40 1 3.0546 8.1332 -1.7794 41 1 1.9626 7.3309 -4.4065 42 1 4.8329 7.4674 -3.7362 43 1 4.0601 6.6525 -5.1303 44 1 5.6603 6.1566 -2.5167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160728366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:34 Heat of formation + Delta-G solvation = -27.033165 kcal Electronic energy + Delta-G solvation = -23655.325706 eV Core-core repulsion = 20414.204913 eV Total energy + Delta-G solvation = -3241.120794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.11879 -38.09565 -35.42589 -34.25208 -33.92732 -31.52622 -30.78052 -28.87259 -27.54804 -26.15926 -24.92097 -23.42770 -22.03858 -21.41653 -20.34975 -19.17513 -18.86708 -16.98344 -16.54770 -16.29810 -15.10828 -14.77049 -14.65750 -14.34971 -14.20477 -14.00693 -13.67024 -13.02011 -12.91100 -12.79816 -12.26722 -12.23686 -12.10561 -11.87434 -11.58841 -11.43332 -11.30467 -11.21093 -10.88444 -10.73861 -10.62613 -10.50662 -10.49068 -10.34474 -10.21140 -10.15694 -9.70104 -9.08648 -8.76831 -8.50727 -7.84547 -7.49807 -6.39389 -4.04964 3.07065 3.18363 3.21280 3.86222 4.07953 4.21253 4.49475 4.74152 4.88779 4.98876 5.09593 5.26133 5.36936 5.40572 5.47696 5.49641 5.58267 5.65700 5.74866 5.82542 5.95864 6.02540 6.07353 6.14257 6.23725 6.31381 6.34214 6.39118 6.40070 6.48469 6.55427 6.60562 6.65425 6.74620 6.84135 7.11892 7.21061 7.27879 7.35844 7.49367 7.81597 7.93283 8.37959 9.08105 9.58380 10.00914 10.61414 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.006284 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.124095 B = 4454.540544 C = 5488.353650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.116 3.884 5 N -0.440 5.440 6 C -0.341 4.341 7 H 0.089 0.911 8 C 0.044 3.956 9 N -0.855 5.855 10 Si 0.908 3.092 11 H -0.277 1.277 12 H -0.269 1.269 13 H -0.282 1.282 14 C 0.486 3.514 15 O -0.590 6.590 16 C 0.073 3.927 17 H 0.103 0.897 18 C -0.134 4.134 19 C -0.150 4.150 20 H 0.083 0.917 21 C 0.044 3.956 22 N -0.671 5.671 23 C 0.032 3.968 24 C 0.059 3.941 25 H 0.101 0.899 26 N -0.647 5.647 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.269 0.731 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.334 0.666 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 6.199 -3.338 9.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.008 4.008 5 N -0.159 5.159 6 C -0.469 4.469 7 H 0.107 0.893 8 C -0.162 4.162 9 N -0.491 5.491 10 Si 0.734 3.266 11 H -0.203 1.203 12 H -0.194 1.194 13 H -0.207 1.207 14 C 0.274 3.726 15 O -0.474 6.474 16 C -0.039 4.039 17 H 0.121 0.879 18 C -0.174 4.174 19 C -0.172 4.172 20 H 0.101 0.899 21 C -0.085 4.085 22 N -0.297 5.297 23 C -0.099 4.099 24 C -0.053 4.053 25 H 0.119 0.881 26 N -0.276 5.276 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.149 0.851 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.317 5.798 -4.015 8.832 hybrid contribution -0.599 0.080 1.651 1.758 sum -5.915 5.878 -2.364 8.668 Atomic orbital electron populations 1.21755 0.96697 1.00658 1.01396 1.21430 0.94907 0.97829 1.01595 1.21892 0.98131 0.95379 1.01083 1.21395 0.90892 0.85004 1.03471 1.43414 1.55859 1.11937 1.04664 1.19414 1.42311 0.95136 0.90041 0.89297 1.25304 0.94277 0.96379 1.00261 1.69958 1.31156 1.15189 1.32789 0.86250 0.78966 0.78640 0.82738 1.20270 1.19395 1.20690 1.19861 0.81246 0.87780 0.83742 1.90488 1.55173 1.69963 1.31785 1.22446 0.97849 0.94068 0.89583 0.87892 1.23123 0.98025 0.99184 0.97114 1.23721 0.99732 0.97132 0.96578 0.89906 1.23323 1.01059 0.94404 0.89714 1.63600 1.06067 1.55010 1.05026 1.23423 0.93931 0.92169 1.00349 1.23729 0.89303 0.97200 0.95046 0.88096 1.62387 1.14040 1.36954 1.14239 0.93423 0.93089 0.93154 0.92422 0.92263 0.92509 0.93106 0.93188 0.87627 0.92052 0.90079 0.91282 0.91049 0.90281 0.85093 0.90279 0.90670 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.74 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.57 5.51 -26.73 -0.15 -2.72 16 4 C 0.12 2.77 4.92 -4.04 -0.02 2.75 16 5 N -0.44 -10.84 2.56 -114.81 -0.29 -11.14 16 6 C -0.34 -8.35 8.24 -14.93 -0.12 -8.47 16 7 H 0.09 2.05 6.01 -52.49 -0.32 1.74 16 8 C 0.04 1.08 4.92 -17.46 -0.09 1.00 16 9 N -0.85 -22.20 11.34 55.50 0.63 -21.57 16 10 Si 0.91 18.94 29.61 -169.99 -5.03 13.90 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 14 C 0.49 11.69 6.62 -10.99 -0.07 11.62 16 15 O -0.59 -15.54 14.97 5.55 0.08 -15.46 16 16 C 0.07 1.45 2.96 -66.77 -0.20 1.26 16 17 H 0.10 2.11 7.55 -51.93 -0.39 1.72 16 18 C -0.13 -2.24 5.52 -24.80 -0.14 -2.38 16 19 C -0.15 -2.32 3.76 -88.01 -0.33 -2.65 16 20 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 21 C 0.04 0.56 7.09 -1.70 -0.01 0.55 16 22 N -0.67 -8.22 7.64 -109.04 -0.83 -9.06 16 23 C 0.03 0.41 7.12 -2.23 -0.02 0.39 16 24 C 0.06 0.96 3.59 -65.23 -0.23 0.72 16 25 H 0.10 1.91 7.61 -51.93 -0.39 1.52 16 26 N -0.65 -11.55 6.90 -95.81 -0.66 -12.22 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 1.26 7.56 -51.93 -0.39 0.87 16 35 H 0.11 2.66 5.35 -51.93 -0.28 2.39 16 36 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 37 H 0.08 1.47 7.11 -51.93 -0.37 1.10 16 38 H 0.07 1.00 7.22 -51.93 -0.37 0.63 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.99 7.20 -51.93 -0.37 0.62 16 41 H 0.33 3.70 8.92 -39.29 -0.35 3.35 16 42 H 0.08 0.99 7.21 -51.93 -0.37 0.62 16 43 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 44 H 0.33 5.02 7.74 -39.29 -0.30 4.72 16 LS Contribution 339.63 15.07 5.12 5.12 Total: -1.00 -28.21 339.63 -9.44 -37.65 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -7.28 Total: 14.63 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.17 Total: -1.86 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -1.16 Total: -53.98 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.08 Total: -15.46 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.21 -9.44 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160728366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.619 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds