Wall clock time and date at job start Tue Mar 31 2020 05:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46854 * 2 1 4 4 C 1.53001 * 109.46854 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47227 * 179.97438 * 4 3 2 6 6 C 1.37098 * 120.00021 * 94.46829 * 5 4 3 7 7 H 1.07995 * 119.99892 * 213.81871 * 6 5 4 8 8 C 1.38956 * 120.00032 * 33.81380 * 6 5 4 9 9 N 1.31415 * 119.99575 * 22.68299 * 8 6 5 10 10 Si 1.86792 * 120.00119 * 202.68382 * 8 6 5 11 11 H 1.48512 * 109.46877 * 270.00215 * 10 8 6 12 12 H 1.48495 * 109.47424 * 29.99809 * 10 8 6 13 13 H 1.48497 * 109.47253 * 150.00392 * 10 8 6 14 14 C 1.34778 * 119.99948 * 274.47004 * 5 4 3 15 15 O 1.21287 * 119.99770 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.99634 * 179.97438 * 14 5 4 17 17 H 1.08996 * 110.70466 * 43.31673 * 16 14 5 18 18 C 1.55110 * 110.78949 * 279.99616 * 16 14 5 19 19 C 1.54549 * 102.62159 * 281.50724 * 18 16 14 20 20 H 1.09008 * 112.36307 * 98.67465 * 19 18 16 21 21 C 1.54226 * 108.89897 * 223.81296 * 19 18 16 22 22 N 1.49550 * 104.09974 * 136.17093 * 21 19 18 23 23 C 1.48488 * 104.54633 * 320.57860 * 22 21 19 24 24 C 1.54359 * 104.83044 * 39.14531 * 23 22 21 25 25 H 1.08998 * 111.86775 * 98.34096 * 24 23 22 26 26 N 1.48018 * 108.63401 * 223.20048 * 24 23 22 27 27 H 1.09003 * 109.47410 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46897 * 300.00041 * 1 2 3 29 29 H 1.08995 * 109.47292 * 59.99740 * 1 2 3 30 30 H 1.08998 * 109.47203 * 240.00233 * 2 1 3 31 31 H 1.09001 * 109.46810 * 119.99530 * 2 1 3 32 32 H 1.09005 * 109.47402 * 60.00268 * 3 2 1 33 33 H 1.08995 * 109.47383 * 300.00204 * 3 2 1 34 34 H 1.08998 * 109.47203 * 60.00233 * 4 3 2 35 35 H 1.09005 * 109.47270 * 299.99714 * 4 3 2 36 36 H 0.97006 * 119.99949 * 179.97438 * 9 8 6 37 37 H 1.09006 * 110.78015 * 39.79258 * 18 16 14 38 38 H 1.09001 * 110.78239 * 163.03299 * 18 16 14 39 39 H 1.09004 * 110.41448 * 255.29233 * 21 19 18 40 40 H 1.08996 * 110.41351 * 17.73950 * 21 19 18 41 41 H 1.00904 * 110.60718 * 80.12809 * 22 21 19 42 42 H 1.08993 * 110.36739 * 280.30046 * 23 22 21 43 43 H 1.09007 * 110.36590 * 157.98050 * 23 22 21 44 44 H 1.00902 * 111.00020 * 18.23221 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3745 3.4396 1.1821 7 1 4.2054 4.4995 1.3013 8 6 4.9125 2.6999 2.2282 9 7 5.5262 1.5641 1.9822 10 14 4.7634 3.3199 3.9839 11 1 5.9369 4.1697 4.3101 12 1 3.5197 4.1191 4.1228 13 1 4.7155 2.1639 4.9147 14 6 4.1967 3.4891 -1.1652 15 8 3.9174 2.9441 -2.2121 16 6 4.6985 4.9101 -1.1657 17 1 5.5390 5.0222 -0.4808 18 6 3.5579 5.8969 -0.8035 19 6 2.7700 6.0034 -2.1288 20 1 1.8878 5.3633 -2.1395 21 6 2.4236 7.4840 -2.3863 22 7 2.7202 7.6803 -3.8389 23 6 3.9636 6.9034 -4.0740 24 6 3.7939 5.6216 -3.2307 25 1 3.4486 4.7818 -3.8336 26 7 5.0717 5.3373 -2.5399 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9289 -0.8909 35 1 3.9337 0.9286 0.8892 36 1 5.9021 1.0479 2.7124 37 1 2.9297 5.4881 -0.0120 38 1 3.9629 6.8659 -0.5120 39 1 1.3705 7.6704 -2.1751 40 1 3.0546 8.1332 -1.7794 41 1 1.9626 7.3309 -4.4065 42 1 4.8329 7.4674 -3.7362 43 1 4.0601 6.6525 -5.1303 44 1 5.6603 6.1566 -2.5167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160728366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:33 Heat of formation + Delta-G solvation = -47.339831 kcal Electronic energy + Delta-G solvation = -23656.206269 eV Core-core repulsion = 20414.204913 eV Total energy + Delta-G solvation = -3242.001357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55857 -39.77699 -37.13203 -35.76670 -35.46532 -33.41482 -32.07279 -30.40191 -28.92267 -27.38913 -26.81170 -24.98035 -23.25533 -22.83538 -21.95522 -20.76717 -20.41512 -18.62283 -18.02482 -17.75091 -16.78234 -16.35833 -16.28144 -15.92825 -15.72587 -15.39385 -15.15457 -14.57751 -14.31543 -14.06570 -13.82911 -13.69468 -13.50248 -13.26734 -13.11650 -13.02304 -12.85172 -12.62870 -12.44847 -12.19903 -12.07538 -12.01812 -11.92623 -11.81991 -11.69127 -11.56292 -11.44365 -10.96128 -10.32211 -9.84363 -9.44459 -9.31902 -8.28675 -6.00569 1.41013 1.48521 1.59080 2.04926 2.32218 2.84978 3.05121 3.20214 3.31874 3.66517 3.90218 3.95509 4.04704 4.12929 4.17467 4.27646 4.30031 4.36127 4.36642 4.42243 4.55092 4.72005 4.80170 4.82882 4.86189 4.88883 4.97002 4.99815 5.01730 5.04201 5.11234 5.15511 5.25369 5.33696 5.40466 5.44101 5.50179 5.57081 5.83053 6.03328 6.33743 6.44767 6.56750 7.16190 7.67581 8.10566 8.73620 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.006284 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.124095 B = 4454.540544 C = 5488.353650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.111 4.111 4 C 0.117 3.883 5 N -0.451 5.451 6 C -0.353 4.353 7 H 0.102 0.898 8 C 0.002 3.998 9 N -0.891 5.891 10 Si 0.977 3.023 11 H -0.271 1.271 12 H -0.260 1.260 13 H -0.283 1.283 14 C 0.471 3.529 15 O -0.623 6.623 16 C 0.075 3.925 17 H 0.095 0.905 18 C -0.123 4.123 19 C -0.147 4.147 20 H 0.061 0.939 21 C 0.055 3.945 22 N -0.665 5.665 23 C 0.044 3.956 24 C 0.057 3.943 25 H 0.065 0.935 26 N -0.661 5.661 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.035 0.965 34 H 0.022 0.978 35 H 0.093 0.907 36 H 0.271 0.729 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.342 0.658 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 8.312 -2.539 10.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.150 4.150 4 C -0.007 4.007 5 N -0.169 5.169 6 C -0.481 4.481 7 H 0.120 0.880 8 C -0.201 4.201 9 N -0.529 5.529 10 Si 0.801 3.199 11 H -0.196 1.196 12 H -0.184 1.184 13 H -0.209 1.209 14 C 0.261 3.739 15 O -0.510 6.510 16 C -0.038 4.038 17 H 0.113 0.887 18 C -0.163 4.163 19 C -0.168 4.168 20 H 0.079 0.921 21 C -0.074 4.074 22 N -0.291 5.291 23 C -0.087 4.087 24 C -0.054 4.054 25 H 0.083 0.917 26 N -0.292 5.292 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.158 0.842 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.280 7.935 -3.222 10.620 hybrid contribution -0.243 -0.654 1.331 1.503 sum -6.524 7.281 -1.891 9.957 Atomic orbital electron populations 1.21703 0.94009 1.02392 1.01756 1.21416 0.97224 0.95208 1.01607 1.21730 0.95486 0.97668 1.00072 1.21343 0.93155 0.84892 1.01281 1.43686 1.55894 1.12078 1.05277 1.19789 1.42350 0.95887 0.90029 0.88030 1.26161 0.93541 0.96429 1.03949 1.70068 1.32200 1.16608 1.33999 0.85186 0.79285 0.78004 0.77467 1.19646 1.18361 1.20882 1.20676 0.80674 0.89535 0.83057 1.90453 1.56586 1.71170 1.32779 1.22278 0.98535 0.92185 0.90800 0.88675 1.23080 0.96643 0.99395 0.97188 1.23646 0.98478 0.99124 0.95578 0.92066 1.23287 1.02344 0.91849 0.89946 1.63622 1.06116 1.54381 1.04969 1.23325 0.94713 0.90342 1.00270 1.23605 0.88776 0.97667 0.95392 0.91728 1.62228 1.15374 1.38374 1.13197 0.91014 0.92463 0.93078 0.92715 0.91993 0.92682 0.94623 0.95938 0.88951 0.91933 0.91710 0.88210 0.89386 0.89255 0.84239 0.89140 0.89684 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.10 16 2 C -0.12 -3.97 5.93 30.59 0.18 -3.79 16 3 C -0.11 -4.66 5.51 30.59 0.17 -4.49 16 4 C 0.12 5.86 4.92 86.38 0.42 6.28 16 5 N -0.45 -23.02 2.56 -635.53 -1.62 -24.64 16 6 C -0.35 -17.46 8.24 84.04 0.69 -16.76 16 7 H 0.10 4.66 6.01 -2.91 -0.02 4.64 16 8 C 0.00 0.11 4.92 84.93 0.42 0.52 16 9 N -0.89 -47.27 11.34 21.67 0.25 -47.03 16 10 Si 0.98 38.39 29.61 68.60 2.03 40.42 16 11 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 12 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 13 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 14 C 0.47 23.52 6.62 87.66 0.58 24.10 16 15 O -0.62 -34.50 14.97 -3.05 -0.05 -34.55 16 16 C 0.07 2.99 2.96 44.55 0.13 3.12 16 17 H 0.10 3.91 7.55 -2.39 -0.02 3.89 16 18 C -0.12 -3.97 5.52 31.84 0.18 -3.80 16 19 C -0.15 -4.40 3.76 -9.10 -0.03 -4.43 16 20 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 21 C 0.06 1.23 7.09 86.20 0.61 1.84 16 22 N -0.66 -14.39 7.64 -498.89 -3.81 -18.20 16 23 C 0.04 1.04 7.12 86.46 0.62 1.66 16 24 C 0.06 1.85 3.59 45.91 0.16 2.01 16 25 H 0.06 2.54 7.61 -2.39 -0.02 2.53 16 26 N -0.66 -23.43 6.90 -457.05 -3.15 -26.59 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.03 1.57 8.14 -2.39 -0.02 1.56 16 34 H 0.02 1.20 7.56 -2.39 -0.02 1.18 16 35 H 0.09 4.87 5.35 -2.38 -0.01 4.86 16 36 H 0.27 13.53 8.31 -92.70 -0.77 12.76 16 37 H 0.06 2.31 7.11 -2.38 -0.02 2.29 16 38 H 0.10 2.61 7.22 -2.39 -0.02 2.59 16 39 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.09 1.87 7.20 -2.39 -0.02 1.85 16 41 H 0.34 6.71 8.92 -89.69 -0.80 5.91 16 42 H 0.09 1.98 7.21 -2.39 -0.02 1.97 16 43 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.35 10.06 7.74 -89.69 -0.69 9.37 16 Total: -1.00 -62.97 339.63 -2.01 -64.97 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -0.49 Total: 42.45 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 4.84 Total: 3.17 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -8.35 Total: -116.46 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.05 Total: -34.55 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -62.97 -2.01 -64.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160728366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.634 kcal (2) G-P(sol) polarization free energy of solvation -62.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds