Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47627 * 2 1 4 4 C 1.52995 * 109.47217 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47048 * 180.02562 * 4 3 2 6 6 C 1.37103 * 119.99667 * 269.99629 * 5 4 3 7 7 H 1.08005 * 119.99864 * 144.92454 * 6 5 4 8 8 C 1.38949 * 120.00183 * 324.92425 * 6 5 4 9 9 N 1.31415 * 119.99674 * 337.07643 * 8 6 5 10 10 Si 1.86800 * 119.99750 * 157.07169 * 8 6 5 11 11 H 1.48499 * 109.46861 * 90.00627 * 10 8 6 12 12 H 1.48504 * 109.46818 * 210.00098 * 10 8 6 13 13 H 1.48498 * 109.47479 * 329.99925 * 10 8 6 14 14 C 1.34776 * 120.00353 * 89.99762 * 5 4 3 15 15 O 1.21287 * 119.99751 * 5.14801 * 14 5 4 16 16 C 1.50706 * 119.99909 * 185.14991 * 14 5 4 17 17 C 1.50858 * 109.96491 * 277.46359 * 16 14 5 18 18 N 1.50049 * 102.55969 * 290.34035 * 17 16 14 19 19 C 1.49565 * 107.73200 * 334.74757 * 18 17 16 20 20 C 1.50498 * 104.87690 * 353.07226 * 19 18 17 21 21 H 1.08996 * 110.08909 * 278.97759 * 20 19 18 22 22 C 1.50789 * 125.14664 * 144.17049 * 20 19 18 23 23 C 1.55971 * 102.83605 * 216.40925 * 22 20 19 24 24 N 1.44007 * 109.46929 * 61.04211 * 16 14 5 25 25 H 1.08995 * 109.46852 * 59.99656 * 1 2 3 26 26 H 1.08992 * 109.47493 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46446 * 299.99996 * 1 2 3 28 28 H 1.09001 * 109.46942 * 239.99835 * 2 1 3 29 29 H 1.09001 * 109.47255 * 120.00342 * 2 1 3 30 30 H 1.09001 * 109.47094 * 59.99928 * 3 2 1 31 31 H 1.09001 * 109.47082 * 300.00447 * 3 2 1 32 32 H 1.09001 * 109.47449 * 59.99776 * 4 3 2 33 33 H 1.09006 * 109.46935 * 299.99611 * 4 3 2 34 34 H 0.97003 * 119.99345 * 185.60628 * 9 8 6 35 35 H 1.08999 * 110.82660 * 172.01751 * 17 16 14 36 36 H 1.08996 * 110.82488 * 48.66096 * 17 16 14 37 37 H 1.00898 * 110.99964 * 96.46506 * 18 17 16 38 38 H 1.09001 * 110.36168 * 111.92304 * 19 18 17 39 39 H 1.09003 * 110.36096 * 234.22051 * 19 18 17 40 40 H 1.09004 * 110.74083 * 334.74832 * 22 20 19 41 41 H 1.09001 * 110.74204 * 98.07092 * 22 20 19 42 42 H 1.09000 * 110.10067 * 125.37225 * 23 22 20 43 43 H 1.09000 * 110.10373 * 246.98957 * 23 22 20 44 44 H 1.00897 * 111.04512 * 186.09103 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2866 3.4704 -1.1871 7 1 4.0909 4.5292 -1.2714 8 6 4.7696 2.7639 -2.2818 9 7 5.4227 1.6379 -2.1009 10 14 4.4905 3.4146 -4.0104 11 1 5.6210 4.2972 -4.3955 12 1 4.4057 2.2761 -4.9601 13 1 3.2232 4.1876 -4.0498 14 6 4.2837 3.4582 1.1674 15 8 4.1720 2.8579 2.2154 16 6 4.6741 4.9138 1.1706 17 6 6.1561 5.0501 0.9239 18 7 6.7491 4.5082 2.1913 19 6 5.7350 4.6776 3.2775 20 6 4.6269 5.4795 2.6499 21 1 4.8863 6.5381 2.6467 22 6 3.1577 5.3072 2.9423 23 6 2.4960 5.5575 1.5523 24 7 3.6238 5.6938 0.5689 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6769 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9331 0.9286 -0.8908 33 1 3.9338 0.9284 0.8892 34 1 5.8300 1.1868 -2.8568 35 1 6.4311 6.0955 0.7835 36 1 6.4627 4.4519 0.0659 37 1 7.0059 3.5383 2.0845 38 1 5.3626 3.7064 3.6035 39 1 6.1669 5.2206 4.1182 40 1 2.9497 4.2961 3.2924 41 1 2.8196 6.0456 3.6693 42 1 1.8628 4.7127 1.2813 43 1 1.9076 6.4746 1.5771 44 1 3.9011 6.6587 0.4684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160728752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = 0.689110 kcal Electronic energy + Delta-G solvation = -24642.350695 eV Core-core repulsion = 21402.432030 eV Total energy + Delta-G solvation = -3239.918666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96720 -37.36706 -35.17905 -34.76273 -33.93567 -31.54509 -30.44921 -28.45179 -27.40179 -26.46244 -24.84379 -23.53795 -21.69587 -21.34242 -20.28658 -19.45617 -18.76294 -16.63314 -15.99272 -15.96010 -15.32759 -14.90041 -14.67327 -14.41162 -13.91505 -13.81306 -13.48386 -13.21796 -12.66361 -12.35362 -12.22169 -12.05261 -11.97797 -11.86184 -11.47661 -11.34104 -11.18669 -11.09752 -11.02707 -10.78528 -10.57628 -10.47857 -10.29938 -10.19877 -10.13971 -9.86645 -9.65946 -9.03452 -8.39420 -8.02157 -7.91126 -7.38813 -6.31442 -3.91425 3.13651 3.25316 3.31055 3.82484 4.06525 4.18632 4.66433 4.73664 5.03230 5.19226 5.25750 5.42125 5.47056 5.53759 5.55444 5.65318 5.84272 5.91023 5.98255 6.05274 6.07777 6.20757 6.23290 6.32292 6.37317 6.38425 6.42833 6.44914 6.51464 6.58110 6.63175 6.72321 6.81404 6.82410 7.02836 7.13196 7.26507 7.41954 7.67700 7.78694 7.85108 8.02635 8.57852 9.15653 9.57937 9.99779 10.70736 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.008728 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.108178 B = 3207.255600 C = 4262.260862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.123 4.123 4 C 0.108 3.892 5 N -0.416 5.416 6 C -0.326 4.326 7 H 0.114 0.886 8 C 0.038 3.962 9 N -0.866 5.866 10 Si 0.910 3.090 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.484 3.516 15 O -0.607 6.607 16 C 0.073 3.927 17 C 0.069 3.931 18 N -0.678 5.678 19 C 0.057 3.943 20 C -0.144 4.144 21 H 0.064 0.936 22 C -0.134 4.134 23 C 0.043 3.957 24 N -0.623 5.623 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.267 0.733 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.341 0.659 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 3.986 3.798 6.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.161 4.161 4 C -0.016 4.016 5 N -0.131 5.131 6 C -0.455 4.455 7 H 0.131 0.869 8 C -0.167 4.167 9 N -0.503 5.503 10 Si 0.737 3.263 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.193 1.193 14 C 0.272 3.728 15 O -0.494 6.494 16 C -0.025 4.025 17 C -0.060 4.060 18 N -0.306 5.306 19 C -0.072 4.072 20 C -0.165 4.165 21 H 0.083 0.917 22 C -0.173 4.173 23 C -0.086 4.086 24 N -0.250 5.250 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.155 0.845 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.103 3.565 3.748 6.602 hybrid contribution -0.491 0.280 -0.530 0.775 sum -4.594 3.844 3.218 6.800 Atomic orbital electron populations 1.21751 0.96648 1.00656 1.01443 1.21434 0.94957 0.97824 1.01548 1.21848 0.97863 0.95274 1.01155 1.21492 0.91214 0.85288 1.03598 1.43363 1.53581 1.11430 1.04687 1.19958 1.43115 0.95962 0.86431 0.86899 1.25389 0.95140 0.96037 1.00115 1.69870 1.30498 1.18092 1.31861 0.86195 0.79231 0.78379 0.82503 1.20456 1.21102 1.19320 1.19677 0.81303 0.87660 0.84184 1.90433 1.58886 1.68106 1.32015 1.22395 0.94062 0.94227 0.91791 1.22129 0.89414 1.01105 0.93381 1.63282 1.38732 1.24493 1.04066 1.21969 0.90209 1.01140 0.93838 1.22845 0.95482 0.99100 0.99097 0.91747 1.22172 0.94265 1.03368 0.97541 1.23674 0.94633 1.01307 0.88988 1.62418 1.06043 1.13173 1.43414 0.93018 0.93436 0.93164 0.92238 0.92532 0.93406 0.92220 0.87490 0.93041 0.92220 0.90917 0.88889 0.84470 0.89719 0.92287 0.89162 0.92533 0.90509 0.91911 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.12 -2.48 5.54 -26.74 -0.15 -2.62 16 4 C 0.11 2.52 5.05 -4.04 -0.02 2.50 16 5 N -0.42 -9.98 2.54 -114.81 -0.29 -10.27 16 6 C -0.33 -7.99 7.79 -14.93 -0.12 -8.11 16 7 H 0.11 2.75 5.98 -52.48 -0.31 2.43 16 8 C 0.04 0.94 4.94 -17.47 -0.09 0.85 16 9 N -0.87 -22.34 11.38 55.50 0.63 -21.70 16 10 Si 0.91 19.54 29.61 -169.99 -5.03 14.50 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 14 C 0.48 11.01 4.80 -10.98 -0.05 10.95 16 15 O -0.61 -14.68 11.53 5.55 0.06 -14.62 16 16 C 0.07 1.40 0.77 -132.36 -0.10 1.30 16 17 C 0.07 1.32 6.73 -3.13 -0.02 1.30 16 18 N -0.68 -12.64 7.32 -111.77 -0.82 -13.46 16 19 C 0.06 1.03 6.75 -3.59 -0.02 1.01 16 20 C -0.14 -2.49 2.71 -89.97 -0.24 -2.74 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 C -0.13 -2.23 6.22 -26.25 -0.16 -2.39 16 23 C 0.04 0.71 6.93 -0.36 0.00 0.71 16 24 N -0.62 -11.13 5.45 -96.73 -0.53 -11.66 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.11 2.69 5.40 -51.93 -0.28 2.41 16 33 H 0.05 1.26 7.36 -51.93 -0.38 0.88 16 34 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.09 2.01 7.37 -51.93 -0.38 1.62 16 37 H 0.34 6.71 8.94 -39.29 -0.35 6.36 16 38 H 0.08 1.72 6.03 -51.93 -0.31 1.40 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.74 6.49 -51.93 -0.34 1.40 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.33 5.06 8.83 -39.29 -0.35 4.72 16 LS Contribution 333.68 15.07 5.03 5.03 Total: -1.00 -26.45 333.68 -9.05 -35.50 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -7.33 Total: 17.83 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.77 Total: -1.14 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -1.01 Total: -57.10 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.06 Total: -14.62 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.45 -9.05 -35.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160728752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.189 kcal (2) G-P(sol) polarization free energy of solvation -26.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds