Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47627 * 2 1 4 4 C 1.52995 * 109.47217 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47048 * 180.02562 * 4 3 2 6 6 C 1.37103 * 119.99667 * 269.99629 * 5 4 3 7 7 H 1.08005 * 119.99864 * 144.92454 * 6 5 4 8 8 C 1.38949 * 120.00183 * 324.92425 * 6 5 4 9 9 N 1.31415 * 119.99674 * 337.07643 * 8 6 5 10 10 Si 1.86800 * 119.99750 * 157.07169 * 8 6 5 11 11 H 1.48499 * 109.46861 * 90.00627 * 10 8 6 12 12 H 1.48504 * 109.46818 * 210.00098 * 10 8 6 13 13 H 1.48498 * 109.47479 * 329.99925 * 10 8 6 14 14 C 1.34776 * 120.00353 * 89.99762 * 5 4 3 15 15 O 1.21287 * 119.99751 * 5.14801 * 14 5 4 16 16 C 1.50706 * 119.99909 * 185.14991 * 14 5 4 17 17 C 1.50858 * 109.96491 * 277.46359 * 16 14 5 18 18 N 1.50049 * 102.55969 * 290.34035 * 17 16 14 19 19 C 1.49565 * 107.73200 * 334.74757 * 18 17 16 20 20 C 1.50498 * 104.87690 * 353.07226 * 19 18 17 21 21 H 1.08996 * 110.08909 * 278.97759 * 20 19 18 22 22 C 1.50789 * 125.14664 * 144.17049 * 20 19 18 23 23 C 1.55971 * 102.83605 * 216.40925 * 22 20 19 24 24 N 1.44007 * 109.46929 * 61.04211 * 16 14 5 25 25 H 1.08995 * 109.46852 * 59.99656 * 1 2 3 26 26 H 1.08992 * 109.47493 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46446 * 299.99996 * 1 2 3 28 28 H 1.09001 * 109.46942 * 239.99835 * 2 1 3 29 29 H 1.09001 * 109.47255 * 120.00342 * 2 1 3 30 30 H 1.09001 * 109.47094 * 59.99928 * 3 2 1 31 31 H 1.09001 * 109.47082 * 300.00447 * 3 2 1 32 32 H 1.09001 * 109.47449 * 59.99776 * 4 3 2 33 33 H 1.09006 * 109.46935 * 299.99611 * 4 3 2 34 34 H 0.97003 * 119.99345 * 185.60628 * 9 8 6 35 35 H 1.08999 * 110.82660 * 172.01751 * 17 16 14 36 36 H 1.08996 * 110.82488 * 48.66096 * 17 16 14 37 37 H 1.00898 * 110.99964 * 96.46506 * 18 17 16 38 38 H 1.09001 * 110.36168 * 111.92304 * 19 18 17 39 39 H 1.09003 * 110.36096 * 234.22051 * 19 18 17 40 40 H 1.09004 * 110.74083 * 334.74832 * 22 20 19 41 41 H 1.09001 * 110.74204 * 98.07092 * 22 20 19 42 42 H 1.09000 * 110.10067 * 125.37225 * 23 22 20 43 43 H 1.09000 * 110.10373 * 246.98957 * 23 22 20 44 44 H 1.00897 * 111.04512 * 186.09103 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2866 3.4704 -1.1871 7 1 4.0909 4.5292 -1.2714 8 6 4.7696 2.7639 -2.2818 9 7 5.4227 1.6379 -2.1009 10 14 4.4905 3.4146 -4.0104 11 1 5.6210 4.2972 -4.3955 12 1 4.4057 2.2761 -4.9601 13 1 3.2232 4.1876 -4.0498 14 6 4.2837 3.4582 1.1674 15 8 4.1720 2.8579 2.2154 16 6 4.6741 4.9138 1.1706 17 6 6.1561 5.0501 0.9239 18 7 6.7491 4.5082 2.1913 19 6 5.7350 4.6776 3.2775 20 6 4.6269 5.4795 2.6499 21 1 4.8863 6.5381 2.6467 22 6 3.1577 5.3072 2.9423 23 6 2.4960 5.5575 1.5523 24 7 3.6238 5.6938 0.5689 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6769 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9331 0.9286 -0.8908 33 1 3.9338 0.9284 0.8892 34 1 5.8300 1.1868 -2.8568 35 1 6.4311 6.0955 0.7835 36 1 6.4627 4.4519 0.0659 37 1 7.0059 3.5383 2.0845 38 1 5.3626 3.7064 3.6035 39 1 6.1669 5.2206 4.1182 40 1 2.9497 4.2961 3.2924 41 1 2.8196 6.0456 3.6693 42 1 1.8628 4.7127 1.2813 43 1 1.9076 6.4746 1.5771 44 1 3.9011 6.6587 0.4684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160728752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = -17.423839 kcal Electronic energy + Delta-G solvation = -24643.136132 eV Core-core repulsion = 21402.432030 eV Total energy + Delta-G solvation = -3240.704102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.52424 -39.10515 -36.91641 -36.23730 -35.53433 -33.38930 -31.91666 -30.01383 -28.86211 -27.91120 -26.72019 -25.12324 -23.09202 -22.89287 -21.89056 -20.88881 -20.58071 -18.34274 -17.72250 -17.42556 -16.91934 -16.53276 -16.28339 -16.12710 -15.50798 -15.34171 -14.97112 -14.75298 -14.16168 -13.81863 -13.77837 -13.57683 -13.51956 -13.43292 -13.05517 -12.96435 -12.75896 -12.72570 -12.46936 -12.35810 -12.14873 -12.02660 -11.96560 -11.79843 -11.56587 -11.43821 -11.25666 -10.88840 -10.11481 -9.53783 -9.44878 -9.21982 -8.19821 -5.84869 1.42036 1.50320 1.60903 2.06097 2.36049 2.65348 3.01472 3.18954 3.21135 3.75697 3.84436 4.01424 4.06474 4.15439 4.18797 4.28629 4.36564 4.48110 4.49440 4.55971 4.70291 4.79622 4.84484 4.87074 4.89866 4.95706 4.97152 5.01028 5.06503 5.07028 5.12646 5.16844 5.34731 5.39401 5.42930 5.54567 5.59551 5.75902 5.79684 6.17327 6.21497 6.54074 6.66517 7.26622 7.73384 8.15048 8.82838 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.008728 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.108178 B = 3207.255600 C = 4262.260862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.107 4.107 4 C 0.110 3.890 5 N -0.432 5.432 6 C -0.329 4.329 7 H 0.117 0.883 8 C -0.003 4.003 9 N -0.898 5.898 10 Si 0.971 3.029 11 H -0.273 1.273 12 H -0.289 1.289 13 H -0.264 1.264 14 C 0.479 3.521 15 O -0.627 6.627 16 C 0.071 3.929 17 C 0.073 3.927 18 N -0.673 5.673 19 C 0.057 3.943 20 C -0.134 4.134 21 H 0.091 0.909 22 C -0.129 4.129 23 C 0.047 3.953 24 N -0.635 5.635 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.028 0.972 34 H 0.267 0.733 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.329 0.671 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.101 0.899 44 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 6.111 3.805 8.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.146 4.146 4 C -0.014 4.014 5 N -0.147 5.147 6 C -0.457 4.457 7 H 0.134 0.866 8 C -0.204 4.204 9 N -0.537 5.537 10 Si 0.796 3.204 11 H -0.199 1.199 12 H -0.215 1.215 13 H -0.189 1.189 14 C 0.268 3.732 15 O -0.515 6.515 16 C -0.026 4.026 17 C -0.057 4.057 18 N -0.300 5.300 19 C -0.071 4.071 20 C -0.156 4.156 21 H 0.109 0.891 22 C -0.168 4.168 23 C -0.082 4.082 24 N -0.264 5.264 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.119 0.881 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.114 5.717 3.765 8.544 hybrid contribution -0.148 -0.406 -0.444 0.619 sum -5.262 5.311 3.321 8.181 Atomic orbital electron populations 1.21699 0.94047 1.02345 1.01767 1.21414 0.97196 0.95284 1.01527 1.21682 0.95457 0.97429 0.99996 1.21400 0.93253 0.85302 1.01423 1.43581 1.54323 1.11548 1.05246 1.20117 1.42721 0.96158 0.86679 0.86608 1.26091 0.94830 0.96316 1.03173 1.69980 1.31708 1.19428 1.32586 0.85256 0.79179 0.77632 0.78320 1.19892 1.21450 1.18872 1.20348 0.80162 0.89287 0.83396 1.90427 1.59329 1.69189 1.32593 1.22253 0.94283 0.92090 0.93993 1.22116 0.89288 1.01931 0.92380 1.63400 1.38781 1.23609 1.04177 1.21981 0.90614 1.00220 0.94290 1.22885 0.95663 1.00111 0.96918 0.89088 1.22116 0.93887 1.02495 0.98301 1.23630 0.94180 1.01974 0.88375 1.62248 1.05791 1.14281 1.44100 0.92683 0.91077 0.92861 0.92320 0.92527 0.94485 0.93111 0.89281 0.95305 0.92357 0.88149 0.92046 0.85724 0.92542 0.89913 0.92473 0.89138 0.93477 0.88111 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.08 16 2 C -0.12 -3.92 5.93 30.59 0.18 -3.74 16 3 C -0.11 -4.44 5.54 30.59 0.17 -4.27 16 4 C 0.11 5.38 5.05 86.38 0.44 5.82 16 5 N -0.43 -21.35 2.54 -635.53 -1.61 -22.97 16 6 C -0.33 -16.29 7.79 84.04 0.65 -15.64 16 7 H 0.12 5.59 5.98 -2.91 -0.02 5.58 16 8 C 0.00 -0.13 4.94 84.93 0.42 0.29 16 9 N -0.90 -47.69 11.38 21.66 0.25 -47.44 16 10 Si 0.97 40.13 29.61 68.60 2.03 42.16 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 12 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 14 C 0.48 22.24 4.80 87.66 0.42 22.66 16 15 O -0.63 -31.40 11.53 -3.05 -0.04 -31.44 16 16 C 0.07 2.68 0.77 4.57 0.00 2.68 16 17 C 0.07 2.71 6.73 84.99 0.57 3.28 16 18 N -0.67 -24.73 7.32 -507.53 -3.72 -28.45 16 19 C 0.06 2.01 6.75 84.97 0.57 2.58 16 20 C -0.13 -4.34 2.71 -10.37 -0.03 -4.37 16 21 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 22 C -0.13 -4.01 6.22 30.91 0.19 -3.81 16 23 C 0.05 1.47 6.93 86.68 0.60 2.07 16 24 N -0.63 -21.39 5.45 -459.93 -2.51 -23.90 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 4.69 5.40 -2.39 -0.01 4.68 16 33 H 0.03 1.49 7.36 -2.38 -0.02 1.47 16 34 H 0.27 13.53 8.32 -92.71 -0.77 12.76 16 35 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.06 2.68 7.37 -2.39 -0.02 2.66 16 37 H 0.33 13.30 8.94 -89.70 -0.80 12.50 16 38 H 0.06 2.31 6.03 -2.39 -0.01 2.29 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.06 2.18 6.49 -2.39 -0.02 2.16 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.05 1.74 8.03 -2.39 -0.02 1.72 16 43 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.35 9.52 8.83 -89.70 -0.79 8.73 16 Total: -1.00 -58.67 333.68 -1.28 -59.95 By element: Atomic # 1 Polarization: 48.20 SS G_CDS: -0.59 Total: 47.61 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.91 Total: 4.47 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -7.59 Total: -122.75 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.04 Total: -31.44 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -58.67 -1.28 -59.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160728752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.522 kcal (2) G-P(sol) polarization free energy of solvation -58.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds