Wall clock time and date at job start Tue Mar 31 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47233 * 2 1 4 4 C 1.53001 * 109.46872 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46797 * 185.59087 * 4 3 2 6 6 C 1.37099 * 119.99688 * 66.49060 * 5 4 3 7 7 H 1.07995 * 120.00140 * 49.78705 * 6 5 4 8 8 C 1.38952 * 119.99659 * 229.78266 * 6 5 4 9 9 N 1.31408 * 120.00032 * 30.41052 * 8 6 5 10 10 Si 1.86803 * 119.99920 * 210.41513 * 8 6 5 11 11 H 1.48496 * 109.47088 * 59.99935 * 10 8 6 12 12 H 1.48504 * 109.46917 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46792 * 299.99769 * 10 8 6 14 14 C 1.34780 * 119.99968 * 246.48400 * 5 4 3 15 15 O 1.21296 * 119.99818 * 171.35729 * 14 5 4 16 16 C 1.50695 * 119.99891 * 351.35407 * 14 5 4 17 17 C 1.48489 * 105.12478 * 65.39834 * 16 14 5 18 18 N 1.49663 * 104.82662 * 73.77746 * 17 16 14 19 19 C 1.49740 * 107.76397 * 4.44603 * 18 17 16 20 20 C 1.52569 * 103.15173 * 25.89563 * 19 18 17 21 21 H 1.09006 * 112.73933 * 76.57839 * 20 19 18 22 22 C 1.52839 * 119.47083 * 213.39687 * 20 19 18 23 23 C 1.56112 * 101.39141 * 145.36250 * 22 20 19 24 24 N 1.41599 * 105.19217 * 280.62079 * 16 14 5 25 25 H 1.08996 * 109.47170 * 60.00139 * 1 2 3 26 26 H 1.09001 * 109.47878 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47195 * 300.00316 * 1 2 3 28 28 H 1.09003 * 109.46488 * 120.00399 * 2 1 3 29 29 H 1.09001 * 109.46675 * 239.99706 * 2 1 3 30 30 H 1.09003 * 109.46968 * 299.99614 * 3 2 1 31 31 H 1.08999 * 109.47288 * 59.99740 * 3 2 1 32 32 H 1.08994 * 109.47329 * 305.59511 * 4 3 2 33 33 H 1.08997 * 109.47357 * 65.59564 * 4 3 2 34 34 H 0.97001 * 120.00255 * 184.97832 * 9 8 6 35 35 H 1.09004 * 110.36961 * 192.61231 * 17 16 14 36 36 H 1.09002 * 110.37186 * 314.83275 * 17 16 14 37 37 H 1.00897 * 110.99939 * 242.69656 * 18 17 16 38 38 H 1.09005 * 110.68810 * 144.31622 * 19 18 17 39 39 H 1.09001 * 110.67946 * 267.31197 * 19 18 17 40 40 H 1.09004 * 111.04212 * 263.39142 * 22 20 19 41 41 H 1.09002 * 111.03770 * 27.33361 * 22 20 19 42 42 H 1.09003 * 110.06045 * 95.16938 * 23 22 20 43 43 H 1.08998 * 110.06015 * 216.62064 * 23 22 20 44 44 H 1.00900 * 110.99259 * 48.80843 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0584 2.8170 0.1339 6 6 3.8408 3.5110 1.2961 7 1 4.0850 3.0616 2.2472 8 6 3.3063 4.7928 1.2500 9 7 2.4842 5.1274 0.2811 10 14 3.7565 6.0403 2.5656 11 1 5.2246 6.2632 2.5547 12 1 3.0595 7.3225 2.2910 13 1 3.3436 5.5269 3.8964 14 6 4.7217 3.3992 -0.8847 15 8 4.9884 4.5816 -0.8376 16 6 5.1321 2.5813 -2.0820 17 6 3.8584 2.1650 -2.7218 18 7 3.3382 3.4038 -3.3811 19 6 4.3651 4.4797 -3.2067 20 6 5.6658 3.6968 -3.0551 21 1 6.0389 3.3117 -4.0042 22 6 6.7692 4.2405 -2.1480 23 6 7.3715 2.9211 -1.5705 24 7 6.2981 1.8881 -1.6758 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8932 -0.5139 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.9337 0.8441 0.8347 33 1 3.9330 1.0179 -0.9367 34 1 2.1678 6.0414 0.2073 35 1 4.0429 1.3889 -3.4646 36 1 3.1543 1.8095 -1.9695 37 1 2.4532 3.6806 -2.9834 38 1 4.4027 5.1222 -4.0865 39 1 4.1594 5.0666 -2.3116 40 1 7.5132 4.7912 -2.7236 41 1 6.3530 4.8610 -1.3543 42 1 8.2352 2.6147 -2.1606 43 1 7.6626 3.0669 -0.5302 44 1 6.1593 1.4397 -0.7826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160728753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:25 Heat of formation + Delta-G solvation = 65.388961 kcal Electronic energy + Delta-G solvation = -25213.059935 eV Core-core repulsion = 21975.946866 eV Total energy + Delta-G solvation = -3237.113069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78213 -36.97742 -35.69994 -34.86019 -33.69869 -32.03582 -30.16983 -28.35795 -27.83747 -26.40628 -24.96169 -23.12974 -21.69116 -21.02177 -20.55636 -19.92919 -18.80253 -16.93129 -16.35949 -15.93006 -15.21732 -15.11147 -14.77650 -14.45944 -14.04221 -13.75454 -13.58489 -12.94527 -12.71661 -12.54506 -12.26909 -12.19537 -11.86653 -11.78103 -11.39850 -11.34677 -11.20720 -10.90714 -10.78136 -10.67792 -10.55389 -10.53226 -10.43185 -10.30140 -10.17733 -9.93100 -9.61756 -8.62754 -8.28455 -7.80798 -7.55483 -7.00634 -6.30564 -4.04869 3.23808 3.32356 3.38502 3.80251 4.13351 4.26627 4.69495 4.79919 4.91542 5.05893 5.35570 5.39918 5.49078 5.52733 5.63163 5.68251 5.77779 5.88977 5.99241 6.04964 6.08183 6.12536 6.14435 6.22575 6.24362 6.28704 6.35747 6.38089 6.42778 6.51387 6.58539 6.71689 6.83232 7.02373 7.11073 7.13803 7.33742 7.46329 7.55086 7.72375 7.91205 8.15056 8.89288 8.99210 9.50844 10.05175 10.73548 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.010851 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.144542 B = 2579.796402 C = 3912.239952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.088 3.912 5 N -0.438 5.438 6 C -0.366 4.366 7 H 0.075 0.925 8 C 0.096 3.904 9 N -0.823 5.823 10 Si 0.897 3.103 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.279 1.279 14 C 0.431 3.569 15 O -0.522 6.522 16 C 0.051 3.949 17 C 0.058 3.942 18 N -0.674 5.674 19 C 0.025 3.975 20 C -0.079 4.079 21 H 0.077 0.923 22 C -0.189 4.189 23 C 0.049 3.951 24 N -0.640 5.640 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.265 0.735 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.340 0.660 38 H 0.057 0.943 39 H 0.111 0.889 40 H 0.043 0.957 41 H 0.172 0.828 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -6.741 -2.830 7.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.036 4.036 5 N -0.158 5.158 6 C -0.492 4.492 7 H 0.093 0.907 8 C -0.116 4.116 9 N -0.455 5.455 10 Si 0.723 3.277 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.205 1.205 14 C 0.219 3.781 15 O -0.404 6.404 16 C -0.047 4.047 17 C -0.071 4.071 18 N -0.303 5.303 19 C -0.103 4.103 20 C -0.099 4.099 21 H 0.095 0.905 22 C -0.225 4.225 23 C -0.079 4.079 24 N -0.270 5.270 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.155 0.845 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.062 0.938 41 H 0.187 0.813 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.332 -6.492 -4.163 7.827 hybrid contribution -0.119 1.174 2.220 2.514 sum 1.213 -5.318 -1.943 5.791 Atomic orbital electron populations 1.21734 0.96301 1.00644 1.01910 1.21522 0.95608 0.97784 1.01213 1.21802 0.95629 0.94873 1.03561 1.21941 0.94549 0.86974 1.00108 1.43401 1.47035 1.11083 1.14236 1.18793 1.45855 0.99441 0.85071 0.90713 1.25098 0.91182 0.98794 0.96541 1.69992 1.23444 1.18835 1.33224 0.86553 0.79402 0.80454 0.81273 1.19961 1.21371 1.20507 1.21626 0.81074 0.89166 0.86237 1.89768 1.54944 1.16462 1.79202 1.21251 0.93120 0.94703 0.95610 1.21968 0.93144 0.94373 0.97612 1.63384 1.06164 1.03660 1.57056 1.23285 0.89886 0.94089 1.03059 1.22674 0.95449 0.95132 0.96685 0.90492 1.24412 0.96396 0.98555 1.03184 1.23334 0.94073 0.90632 0.99838 1.60770 1.04690 1.27962 1.33601 0.92895 0.93475 0.92821 0.92445 0.92652 0.92253 0.90334 0.93191 0.91262 0.92491 0.91103 0.89471 0.84501 0.92420 0.87174 0.93808 0.81271 0.91553 0.93120 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.12 -2.14 4.89 -26.73 -0.13 -2.27 16 4 C 0.09 1.63 4.19 -4.04 -0.02 1.61 16 5 N -0.44 -9.84 2.54 -114.81 -0.29 -10.13 16 6 C -0.37 -9.27 8.37 -14.93 -0.12 -9.39 16 7 H 0.08 1.90 7.99 -52.49 -0.42 1.48 16 8 C 0.10 2.49 4.00 -17.47 -0.07 2.42 16 9 N -0.82 -21.86 12.94 55.50 0.72 -21.14 16 10 Si 0.90 20.95 29.65 -169.99 -5.04 15.91 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.43 9.56 3.78 -10.99 -0.04 9.52 16 15 O -0.52 -12.99 7.76 5.54 0.04 -12.95 16 16 C 0.05 0.97 1.49 -135.35 -0.20 0.77 16 17 C 0.06 1.07 5.91 -4.48 -0.03 1.04 16 18 N -0.67 -12.92 7.49 -112.05 -0.84 -13.76 16 19 C 0.02 0.50 6.72 -2.46 -0.02 0.48 16 20 C -0.08 -1.54 3.72 -88.55 -0.33 -1.87 16 21 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 22 C -0.19 -3.62 6.14 -25.15 -0.15 -3.78 16 23 C 0.05 0.87 7.16 -0.79 -0.01 0.86 16 24 N -0.64 -11.44 7.17 -100.60 -0.72 -12.16 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.14 6.96 -51.93 -0.36 0.78 16 31 H 0.08 1.63 7.65 -51.93 -0.40 1.23 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.19 4.36 -51.93 -0.23 0.97 16 34 H 0.27 6.93 8.32 -40.82 -0.34 6.59 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.60 2.97 -51.93 -0.15 1.44 16 37 H 0.34 6.78 8.94 -39.29 -0.35 6.43 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.11 2.63 5.08 -47.26 -0.24 2.39 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.17 3.85 4.27 -53.45 -0.23 3.63 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.34 5.94 7.58 -39.29 -0.30 5.64 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -26.58 322.89 -9.06 -35.63 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -6.88 Total: 17.73 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.91 Total: -4.01 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -1.13 Total: -57.18 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.04 Total: -12.95 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.04 Total: 15.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.58 -9.06 -35.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160728753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.023 kcal (2) G-P(sol) polarization free energy of solvation -26.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds