Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47216 * 2 1 4 4 C 1.52996 * 109.47585 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47677 * 178.33585 * 4 3 2 6 6 C 1.37095 * 120.00354 * 97.23490 * 5 4 3 7 7 H 1.07996 * 120.00301 * 108.76865 * 6 5 4 8 8 C 1.38954 * 119.99997 * 288.76612 * 6 5 4 9 9 N 1.31405 * 119.99936 * 158.97322 * 8 6 5 10 10 Si 1.86798 * 120.00075 * 338.70275 * 8 6 5 11 11 H 1.48507 * 109.47212 * 96.58647 * 10 8 6 12 12 H 1.48498 * 109.47216 * 216.58944 * 10 8 6 13 13 H 1.48504 * 109.47161 * 336.58873 * 10 8 6 14 14 C 1.34779 * 119.99816 * 277.23690 * 5 4 3 15 15 O 1.21291 * 119.99991 * 4.97121 * 14 5 4 16 16 C 1.50702 * 120.00045 * 184.96549 * 14 5 4 17 17 C 1.54387 * 111.79749 * 70.65372 * 16 14 5 18 18 N 1.48495 * 104.81798 * 98.33960 * 17 16 14 19 19 C 1.48556 * 104.21071 * 39.33502 * 18 17 16 20 20 C 1.54226 * 104.55085 * 320.00822 * 19 18 17 21 21 H 1.08999 * 112.27489 * 262.43297 * 20 19 18 22 22 C 1.54425 * 108.98042 * 136.84847 * 20 19 18 23 23 C 1.54912 * 102.98272 * 225.54609 * 22 20 19 24 24 N 1.47887 * 111.76429 * 308.59397 * 16 14 5 25 25 H 1.08992 * 109.47573 * 300.00241 * 1 2 3 26 26 H 1.09003 * 109.46829 * 60.00832 * 1 2 3 27 27 H 1.09004 * 109.47151 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47573 * 239.99759 * 2 1 3 29 29 H 1.09007 * 109.46613 * 119.99634 * 2 1 3 30 30 H 1.09004 * 109.47367 * 59.99631 * 3 2 1 31 31 H 1.08999 * 109.47166 * 299.99707 * 3 2 1 32 32 H 1.09010 * 109.47093 * 58.33114 * 4 3 2 33 33 H 1.09007 * 109.47338 * 298.33799 * 4 3 2 34 34 H 0.97005 * 120.00433 * 180.02562 * 9 8 6 35 35 H 1.09004 * 110.37037 * 217.17368 * 17 16 14 36 36 H 1.09002 * 110.37096 * 339.50582 * 17 16 14 37 37 H 1.00898 * 111.00298 * 158.88653 * 18 17 16 38 38 H 1.08997 * 110.41943 * 78.77839 * 19 18 17 39 39 H 1.09005 * 110.42046 * 201.11936 * 19 18 17 40 40 H 1.08994 * 110.70748 * 343.92305 * 22 20 19 41 41 H 1.08996 * 110.71089 * 107.17108 * 22 20 19 42 42 H 1.08998 * 110.66445 * 156.22076 * 23 22 20 43 43 H 1.08996 * 110.66846 * 279.18622 * 23 22 20 44 44 H 1.00894 * 110.99876 * 23.04877 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8231 -0.0395 6 6 4.4273 3.4537 1.1206 7 1 5.4700 3.6537 1.3184 8 6 3.4597 3.8357 2.0418 9 7 3.7935 4.0499 3.2946 10 14 1.6858 4.0519 1.4978 11 1 0.9228 2.8126 1.7934 12 1 1.0793 5.1930 2.2294 13 1 1.6451 4.3219 0.0381 14 6 4.1448 3.4733 -1.2169 15 8 3.7345 2.9491 -2.2308 16 6 4.7511 4.8518 -1.2736 17 6 6.2765 4.8173 -1.0379 18 7 6.8720 4.8649 -2.3974 19 6 6.0128 5.8237 -3.1385 20 6 4.5791 5.5009 -2.6707 21 1 4.0533 4.8499 -3.3692 22 6 3.8268 6.8235 -2.4073 23 6 3.1319 6.5638 -1.0474 24 7 4.1393 5.7613 -0.2808 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9029 -0.8738 33 1 3.9330 0.9549 0.9054 34 1 3.1180 4.3162 3.9378 35 1 6.5902 5.6838 -0.4557 36 1 6.5614 3.8953 -0.5311 37 1 7.8273 5.1877 -2.3627 38 1 6.2756 6.8492 -2.8789 39 1 6.1083 5.6680 -4.2132 40 1 4.5262 7.6559 -2.3301 41 1 3.0892 7.0095 -3.1879 42 1 2.9187 7.5039 -0.5386 43 1 2.2175 5.9872 -1.1865 44 1 3.7241 5.2417 0.4779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160728754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = -10.824278 kcal Electronic energy + Delta-G solvation = -24654.089010 eV Core-core repulsion = 21413.671087 eV Total energy + Delta-G solvation = -3240.417923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24538 -37.79087 -35.49950 -34.62352 -34.06096 -32.07542 -30.79456 -28.69682 -27.82313 -26.15212 -24.95257 -23.41256 -21.49155 -21.16343 -20.90726 -19.75604 -18.72765 -17.55697 -16.29922 -15.82293 -15.51356 -14.88281 -14.77089 -14.41507 -14.11822 -13.80751 -13.62786 -13.41850 -13.00057 -12.78873 -12.59128 -12.27515 -12.03522 -11.87918 -11.55422 -11.39535 -11.33784 -11.13835 -11.04739 -10.74285 -10.66458 -10.57412 -10.56150 -10.42612 -10.20748 -10.06817 -9.54950 -9.11094 -8.79242 -8.16426 -7.71546 -7.44000 -6.60754 -4.51859 2.90545 3.09579 3.13867 3.63293 3.96080 4.28156 4.60853 4.66800 4.81998 4.99886 5.24057 5.33378 5.35823 5.42411 5.51873 5.61640 5.70849 5.81641 5.85549 5.90390 5.97395 6.10653 6.13752 6.16243 6.22761 6.23018 6.27471 6.32126 6.35029 6.42472 6.46153 6.51743 6.62250 6.67966 6.79650 6.89968 6.97349 7.39656 7.50394 7.67429 8.03555 8.18395 8.33470 8.85767 9.17506 9.62514 10.44029 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.007985 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.733087 B = 3505.569370 C = 3949.203688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.167 4.167 4 C 0.116 3.884 5 N -0.478 5.478 6 C -0.353 4.353 7 H 0.100 0.900 8 C 0.082 3.918 9 N -0.840 5.840 10 Si 0.851 3.149 11 H -0.255 1.255 12 H -0.287 1.287 13 H -0.261 1.261 14 C 0.495 3.505 15 O -0.579 6.579 16 C 0.106 3.894 17 C 0.066 3.934 18 N -0.668 5.668 19 C 0.048 3.952 20 C -0.093 4.093 21 H 0.103 0.897 22 C -0.115 4.115 23 C 0.025 3.975 24 N -0.657 5.657 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.277 0.723 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.331 0.669 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.035 0.965 44 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 1.764 -5.989 6.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.205 4.205 4 C -0.007 4.007 5 N -0.201 5.201 6 C -0.481 4.481 7 H 0.118 0.882 8 C -0.128 4.128 9 N -0.472 5.472 10 Si 0.679 3.321 11 H -0.182 1.182 12 H -0.214 1.214 13 H -0.185 1.185 14 C 0.283 3.717 15 O -0.460 6.460 16 C 0.011 3.989 17 C -0.064 4.064 18 N -0.296 5.296 19 C -0.082 4.082 20 C -0.112 4.112 21 H 0.121 0.879 22 C -0.153 4.153 23 C -0.105 4.105 24 N -0.301 5.301 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.145 0.855 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.009 1.378 -6.459 6.681 hybrid contribution -1.483 0.389 0.352 1.573 sum -2.492 1.767 -6.107 6.828 Atomic orbital electron populations 1.21767 0.96536 1.00906 1.01612 1.21394 0.95306 0.97085 1.01663 1.22636 0.97841 0.97000 1.02999 1.21539 0.92503 0.85385 1.01259 1.43606 1.59971 1.10616 1.05863 1.18897 0.95021 1.39146 0.95066 0.88242 1.25743 0.98176 0.94257 0.94663 1.69758 1.35539 1.40609 1.01327 0.87526 0.86462 0.77929 0.80157 1.18213 1.21416 1.18536 1.21158 0.79119 0.87584 0.83867 1.90508 1.51042 1.69001 1.35425 1.22014 0.95415 0.89712 0.91804 1.22832 0.91951 1.02146 0.89465 1.63742 1.05061 1.47755 1.13091 1.22946 0.92611 0.93887 0.98714 1.22717 0.95992 0.96158 0.96369 0.87883 1.22573 0.99186 0.96935 0.96605 1.23366 0.94590 0.98316 0.94189 1.63717 1.31917 1.25234 1.09256 0.93061 0.93012 0.93057 0.92154 0.92068 0.90705 0.91999 0.92343 0.90628 0.91188 0.92271 0.89849 0.85480 0.94106 0.90808 0.90875 0.91521 0.90560 0.94683 0.79603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.15 0.37 -1.86 16 2 C -0.12 -1.93 5.93 -26.74 -0.16 -2.08 16 3 C -0.17 -3.44 3.99 -26.74 -0.11 -3.55 16 4 C 0.12 2.52 5.17 -4.05 -0.02 2.50 16 5 N -0.48 -11.40 1.65 -114.81 -0.19 -11.59 16 6 C -0.35 -8.85 6.33 -14.93 -0.09 -8.94 16 7 H 0.10 2.67 7.16 -52.49 -0.38 2.29 16 8 C 0.08 2.09 4.64 -17.47 -0.08 2.01 16 9 N -0.84 -22.11 13.96 55.50 0.77 -21.33 16 10 Si 0.85 19.86 22.72 -169.99 -3.86 16.00 16 11 H -0.25 -5.72 5.66 56.52 0.32 -5.40 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.26 -6.31 6.14 56.52 0.35 -5.96 16 14 C 0.50 11.90 6.46 -10.98 -0.07 11.83 16 15 O -0.58 -14.88 14.98 5.55 0.08 -14.80 16 16 C 0.11 2.24 0.65 -130.42 -0.08 2.16 16 17 C 0.07 1.28 6.14 -2.21 -0.01 1.27 16 18 N -0.67 -11.31 7.62 -109.79 -0.84 -12.15 16 19 C 0.05 0.75 7.01 -2.27 -0.02 0.73 16 20 C -0.09 -1.71 3.54 -88.17 -0.31 -2.02 16 21 H 0.10 2.09 6.84 -51.93 -0.36 1.74 16 22 C -0.11 -1.84 6.61 -24.97 -0.17 -2.00 16 23 C 0.02 0.46 7.60 -1.14 -0.01 0.45 16 24 N -0.66 -14.17 6.70 -95.33 -0.64 -14.81 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.65 2.68 -51.93 -0.14 1.51 16 31 H 0.06 1.38 7.85 -51.93 -0.41 0.97 16 32 H 0.06 1.25 7.73 -51.92 -0.40 0.85 16 33 H 0.08 1.59 7.98 -51.92 -0.41 1.17 16 34 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.06 1.13 7.97 -51.93 -0.41 0.71 16 36 H 0.08 1.76 6.94 -51.93 -0.36 1.40 16 37 H 0.33 4.61 8.92 -39.29 -0.35 4.26 16 38 H 0.04 0.57 7.19 -51.93 -0.37 0.20 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.05 7.19 -51.93 -0.37 0.68 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.03 0.71 7.18 -51.93 -0.37 0.33 16 44 H 0.37 8.75 2.34 -39.29 -0.09 8.66 16 LS Contribution 321.94 15.07 4.85 4.85 Total: -1.00 -28.09 321.94 -7.66 -35.75 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -7.08 Total: 17.58 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.76 Total: 0.50 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.89 Total: -59.88 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.08 Total: -14.80 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -3.86 Total: 16.00 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.09 -7.66 -35.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160728754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.926 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds