Wall clock time and date at job start Tue Mar 31 2020 05:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47216 * 2 1 4 4 C 1.52996 * 109.47585 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47677 * 178.33585 * 4 3 2 6 6 C 1.37095 * 120.00354 * 97.23490 * 5 4 3 7 7 H 1.07996 * 120.00301 * 108.76865 * 6 5 4 8 8 C 1.38954 * 119.99997 * 288.76612 * 6 5 4 9 9 N 1.31405 * 119.99936 * 158.97322 * 8 6 5 10 10 Si 1.86798 * 120.00075 * 338.70275 * 8 6 5 11 11 H 1.48507 * 109.47212 * 96.58647 * 10 8 6 12 12 H 1.48498 * 109.47216 * 216.58944 * 10 8 6 13 13 H 1.48504 * 109.47161 * 336.58873 * 10 8 6 14 14 C 1.34779 * 119.99816 * 277.23690 * 5 4 3 15 15 O 1.21291 * 119.99991 * 4.97121 * 14 5 4 16 16 C 1.50702 * 120.00045 * 184.96549 * 14 5 4 17 17 C 1.54387 * 111.79749 * 70.65372 * 16 14 5 18 18 N 1.48495 * 104.81798 * 98.33960 * 17 16 14 19 19 C 1.48556 * 104.21071 * 39.33502 * 18 17 16 20 20 C 1.54226 * 104.55085 * 320.00822 * 19 18 17 21 21 H 1.08999 * 112.27489 * 262.43297 * 20 19 18 22 22 C 1.54425 * 108.98042 * 136.84847 * 20 19 18 23 23 C 1.54912 * 102.98272 * 225.54609 * 22 20 19 24 24 N 1.47887 * 111.76429 * 308.59397 * 16 14 5 25 25 H 1.08992 * 109.47573 * 300.00241 * 1 2 3 26 26 H 1.09003 * 109.46829 * 60.00832 * 1 2 3 27 27 H 1.09004 * 109.47151 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47573 * 239.99759 * 2 1 3 29 29 H 1.09007 * 109.46613 * 119.99634 * 2 1 3 30 30 H 1.09004 * 109.47367 * 59.99631 * 3 2 1 31 31 H 1.08999 * 109.47166 * 299.99707 * 3 2 1 32 32 H 1.09010 * 109.47093 * 58.33114 * 4 3 2 33 33 H 1.09007 * 109.47338 * 298.33799 * 4 3 2 34 34 H 0.97005 * 120.00433 * 180.02562 * 9 8 6 35 35 H 1.09004 * 110.37037 * 217.17368 * 17 16 14 36 36 H 1.09002 * 110.37096 * 339.50582 * 17 16 14 37 37 H 1.00898 * 111.00298 * 158.88653 * 18 17 16 38 38 H 1.08997 * 110.41943 * 78.77839 * 19 18 17 39 39 H 1.09005 * 110.42046 * 201.11936 * 19 18 17 40 40 H 1.08994 * 110.70748 * 343.92305 * 22 20 19 41 41 H 1.08996 * 110.71089 * 107.17108 * 22 20 19 42 42 H 1.08998 * 110.66445 * 156.22076 * 23 22 20 43 43 H 1.08996 * 110.66846 * 279.18622 * 23 22 20 44 44 H 1.00894 * 110.99876 * 23.04877 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8231 -0.0395 6 6 4.4273 3.4537 1.1206 7 1 5.4700 3.6537 1.3184 8 6 3.4597 3.8357 2.0418 9 7 3.7935 4.0499 3.2946 10 14 1.6858 4.0519 1.4978 11 1 0.9228 2.8126 1.7934 12 1 1.0793 5.1930 2.2294 13 1 1.6451 4.3219 0.0381 14 6 4.1448 3.4733 -1.2169 15 8 3.7345 2.9491 -2.2308 16 6 4.7511 4.8518 -1.2736 17 6 6.2765 4.8173 -1.0379 18 7 6.8720 4.8649 -2.3974 19 6 6.0128 5.8237 -3.1385 20 6 4.5791 5.5009 -2.6707 21 1 4.0533 4.8499 -3.3692 22 6 3.8268 6.8235 -2.4073 23 6 3.1319 6.5638 -1.0474 24 7 4.1393 5.7613 -0.2808 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9029 -0.8738 33 1 3.9330 0.9549 0.9054 34 1 3.1180 4.3162 3.9378 35 1 6.5902 5.6838 -0.4557 36 1 6.5614 3.8953 -0.5311 37 1 7.8273 5.1877 -2.3627 38 1 6.2756 6.8492 -2.8789 39 1 6.1083 5.6680 -4.2132 40 1 4.5262 7.6559 -2.3301 41 1 3.0892 7.0095 -3.1879 42 1 2.9187 7.5039 -0.5386 43 1 2.2175 5.9872 -1.1865 44 1 3.7241 5.2417 0.4779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160728754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:27 Heat of formation + Delta-G solvation = -31.970767 kcal Electronic energy + Delta-G solvation = -24655.005991 eV Core-core repulsion = 21413.671087 eV Total energy + Delta-G solvation = -3241.334904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.90751 -39.45810 -37.31741 -36.11408 -35.62772 -34.00745 -32.26488 -30.23558 -29.35249 -27.60175 -26.85242 -25.00925 -22.98200 -22.60114 -22.40174 -21.40996 -20.48159 -19.27476 -18.11579 -17.26505 -17.22335 -16.56004 -16.48668 -16.01997 -15.92016 -15.26445 -15.11103 -14.98453 -14.61043 -14.43639 -14.13176 -13.94686 -13.57860 -13.38098 -13.18447 -12.96717 -12.86257 -12.77090 -12.55875 -12.30328 -12.19763 -12.16312 -12.06582 -11.79435 -11.78720 -11.63390 -11.38515 -10.88870 -10.63580 -9.51758 -9.45319 -9.32849 -8.59367 -6.52028 1.02353 1.18001 1.24069 1.76494 2.02690 2.49755 2.73066 3.19437 3.37658 3.56087 3.81806 3.90002 3.92219 3.98902 4.12497 4.17089 4.24335 4.37362 4.42485 4.47372 4.59374 4.60900 4.69178 4.73741 4.78839 4.82202 4.86821 4.92059 4.95379 4.98352 5.01614 5.08274 5.12487 5.25110 5.27753 5.32849 5.50709 5.57397 5.93328 6.13900 6.18758 6.48651 6.50429 6.86955 7.26374 7.70871 8.48319 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.007985 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.733087 B = 3505.569370 C = 3949.203688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.160 4.160 4 C 0.112 3.888 5 N -0.485 5.485 6 C -0.344 4.344 7 H 0.076 0.924 8 C 0.064 3.936 9 N -0.869 5.869 10 Si 0.890 3.110 11 H -0.241 1.241 12 H -0.283 1.283 13 H -0.278 1.278 14 C 0.485 3.515 15 O -0.602 6.602 16 C 0.095 3.905 17 C 0.075 3.925 18 N -0.676 5.676 19 C 0.054 3.946 20 C -0.097 4.097 21 H 0.080 0.920 22 C -0.101 4.101 23 C 0.016 3.984 24 N -0.668 5.668 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.283 0.717 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.349 0.651 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.013 0.987 44 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 2.400 -6.975 7.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.198 4.198 4 C -0.011 4.011 5 N -0.207 5.207 6 C -0.472 4.472 7 H 0.094 0.906 8 C -0.145 4.145 9 N -0.503 5.503 10 Si 0.718 3.282 11 H -0.168 1.168 12 H -0.210 1.210 13 H -0.203 1.203 14 C 0.273 3.727 15 O -0.485 6.485 16 C 0.000 4.000 17 C -0.055 4.055 18 N -0.306 5.306 19 C -0.075 4.075 20 C -0.118 4.118 21 H 0.098 0.902 22 C -0.139 4.139 23 C -0.113 4.113 24 N -0.309 5.309 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.166 0.834 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.032 0.968 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.333 2.018 -7.446 7.829 hybrid contribution -1.328 0.162 0.629 1.478 sum -2.661 2.180 -6.818 7.636 Atomic orbital electron populations 1.21766 0.94962 1.02739 1.01214 1.21414 0.96705 0.94252 1.02834 1.22542 0.96667 0.99527 1.01021 1.21654 0.93561 0.84460 1.01429 1.43747 1.59943 1.11369 1.05628 1.18596 0.93977 1.39411 0.95236 0.90638 1.25990 1.00115 0.93963 0.94459 1.69787 1.36640 1.41819 1.02017 0.86925 0.84171 0.78457 0.78672 1.16770 1.21032 1.20348 1.21763 0.78716 0.88762 0.83413 1.90474 1.52098 1.69975 1.35999 1.22187 0.96019 0.88254 0.93574 1.22600 0.91170 1.00916 0.90820 1.63662 1.06403 1.49106 1.11445 1.22995 0.90234 0.94763 0.99467 1.22749 0.98139 0.96752 0.94115 0.90178 1.22589 0.99690 0.96260 0.95394 1.23566 0.93456 0.98358 0.95928 1.63746 1.32642 1.25101 1.09433 0.93626 0.93288 0.90131 0.91102 0.90788 0.92146 0.94207 0.92282 0.90196 0.90618 0.91934 0.92488 0.83382 0.91539 0.88907 0.88335 0.89197 0.88446 0.96850 0.81173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.91 71.98 0.71 -3.40 16 2 C -0.11 -3.60 5.93 30.59 0.18 -3.42 16 3 C -0.16 -6.56 3.99 30.59 0.12 -6.44 16 4 C 0.11 4.91 5.17 86.38 0.45 5.36 16 5 N -0.48 -23.64 1.65 -635.54 -1.05 -24.69 16 6 C -0.34 -17.64 6.33 84.04 0.53 -17.11 16 7 H 0.08 4.22 7.16 -2.91 -0.02 4.20 16 8 C 0.06 3.25 4.64 84.93 0.39 3.65 16 9 N -0.87 -46.12 13.96 21.66 0.30 -45.82 16 10 Si 0.89 41.27 22.72 68.60 1.56 42.83 16 11 H -0.24 -10.57 5.66 99.48 0.56 -10.01 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.28 -13.64 6.14 99.48 0.61 -13.03 16 14 C 0.49 23.73 6.46 87.66 0.57 24.30 16 15 O -0.60 -31.61 14.98 -3.06 -0.05 -31.65 16 16 C 0.09 4.01 0.65 3.75 0.00 4.01 16 17 C 0.08 2.92 6.14 86.47 0.53 3.45 16 18 N -0.68 -21.78 7.62 -501.28 -3.82 -25.61 16 19 C 0.05 1.55 7.01 86.40 0.61 2.15 16 20 C -0.10 -3.46 3.54 -9.21 -0.03 -3.49 16 21 H 0.08 3.21 6.84 -2.39 -0.02 3.20 16 22 C -0.10 -2.97 6.61 31.73 0.21 -2.76 16 23 C 0.02 0.57 7.60 86.37 0.66 1.23 16 24 N -0.67 -28.62 6.70 -455.52 -3.05 -31.67 16 25 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.06 2.65 2.68 -2.38 -0.01 2.64 16 31 H 0.04 1.78 7.85 -2.39 -0.02 1.77 16 32 H 0.06 2.56 7.73 -2.38 -0.02 2.54 16 33 H 0.08 3.39 7.98 -2.38 -0.02 3.37 16 34 H 0.28 14.02 8.31 -92.70 -0.77 13.25 16 35 H 0.06 2.35 7.97 -2.38 -0.02 2.33 16 36 H 0.06 2.48 6.94 -2.39 -0.02 2.47 16 37 H 0.35 8.97 8.92 -89.70 -0.80 8.17 16 38 H 0.07 1.58 7.19 -2.39 -0.02 1.56 16 39 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.10 2.41 7.19 -2.39 -0.02 2.39 16 41 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.01 0.53 7.18 -2.39 -0.02 0.51 16 44 H 0.36 17.06 2.34 -89.70 -0.21 16.85 16 Total: -1.00 -61.48 321.94 -1.42 -62.90 By element: Atomic # 1 Polarization: 46.41 SS G_CDS: -0.24 Total: 46.16 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 4.93 Total: 7.53 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -7.62 Total: -127.78 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.05 Total: -31.65 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.56 Total: 42.83 kcal Total: -61.48 -1.42 -62.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160728754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.931 kcal (2) G-P(sol) polarization free energy of solvation -61.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds