Wall clock time and date at job start Tue Mar 31 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47095 * 2 1 4 4 C 1.53006 * 109.46931 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46759 * 179.97438 * 4 3 2 6 6 C 1.37105 * 120.00150 * 90.00063 * 5 4 3 7 7 H 1.07990 * 120.00227 * 223.98857 * 6 5 4 8 8 C 1.38947 * 119.99635 * 43.98871 * 6 5 4 9 9 N 1.31416 * 120.00137 * 21.52358 * 8 6 5 10 10 Si 1.86799 * 119.99794 * 201.52298 * 8 6 5 11 11 H 1.48504 * 109.47135 * 270.00264 * 10 8 6 12 12 H 1.48506 * 109.47123 * 150.00272 * 10 8 6 13 13 H 1.48498 * 109.47087 * 30.00184 * 10 8 6 14 14 C 1.34778 * 120.00181 * 269.99502 * 5 4 3 15 15 O 1.21300 * 119.99777 * 356.06129 * 14 5 4 16 16 C 1.50701 * 120.00415 * 176.05490 * 14 5 4 17 17 C 1.54392 * 111.80009 * 278.05388 * 16 14 5 18 18 N 1.50888 * 103.66238 * 261.46948 * 17 16 14 19 19 C 1.48564 * 104.30242 * 320.41790 * 18 17 16 20 20 C 1.54232 * 104.54888 * 40.26086 * 19 18 17 21 21 H 1.09004 * 112.70744 * 97.81287 * 20 19 18 22 22 C 1.54408 * 109.76307 * 222.81350 * 20 19 18 23 23 C 1.54907 * 102.98499 * 134.78852 * 22 20 19 24 24 N 1.47890 * 111.75701 * 40.11028 * 16 14 5 25 25 H 1.09006 * 109.47238 * 59.99584 * 1 2 3 26 26 H 1.08999 * 109.47489 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46917 * 299.99873 * 1 2 3 28 28 H 1.09003 * 109.46917 * 240.00126 * 2 1 3 29 29 H 1.09001 * 109.47106 * 119.99688 * 2 1 3 30 30 H 1.08996 * 109.47322 * 59.99881 * 3 2 1 31 31 H 1.09003 * 109.47403 * 299.99774 * 3 2 1 32 32 H 1.09003 * 109.47077 * 60.00129 * 4 3 2 33 33 H 1.08992 * 109.47188 * 299.99767 * 4 3 2 34 34 H 0.96992 * 119.99802 * 1.44827 * 9 8 6 35 35 H 1.08999 * 110.36682 * 20.49351 * 17 16 14 36 36 H 1.08994 * 110.36820 * 142.82019 * 17 16 14 37 37 H 1.00899 * 111.18260 * 80.11557 * 18 17 16 38 38 H 1.08997 * 110.41664 * 281.49434 * 19 18 17 39 39 H 1.08997 * 110.51743 * 159.07891 * 19 18 17 40 40 H 1.09003 * 110.70986 * 16.41603 * 22 20 19 41 41 H 1.08993 * 110.86873 * 253.23911 * 22 20 19 42 42 H 1.09005 * 110.67240 * 203.77763 * 23 22 20 43 43 H 1.09003 * 110.66547 * 80.64587 * 23 22 20 44 44 H 1.00902 * 110.99780 * 218.23699 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.2873 3.4704 1.1858 7 1 3.9592 4.4909 1.3168 8 6 4.9416 2.8127 2.2202 9 7 5.7015 1.7724 1.9608 10 14 4.7411 3.4073 3.9796 11 1 5.7917 4.4112 4.2857 12 1 4.8705 2.2563 4.9090 13 1 3.4016 4.0273 4.1430 14 6 4.2825 3.4587 -1.1687 15 8 4.1488 2.8645 -2.2177 16 6 4.6993 4.9069 -1.1710 17 6 3.4881 5.8523 -1.0196 18 7 3.1929 6.2829 -2.4353 19 6 4.5329 6.4784 -3.0463 20 6 5.3803 5.3094 -2.5040 21 1 5.4461 4.4769 -3.2046 22 6 6.7794 5.8224 -2.0994 23 6 7.0103 5.1535 -0.7215 24 7 5.6667 5.2006 -0.0916 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 5.8224 1.4765 1.0450 35 1 2.6417 5.3184 -0.5876 36 1 3.7517 6.7106 -0.4016 37 1 2.6696 5.5761 -2.9298 38 1 4.9575 7.4326 -2.7345 39 1 4.4680 6.4289 -4.1332 40 1 6.7794 6.9084 -2.0056 41 1 7.5338 5.4989 -2.8164 42 1 7.7310 5.7221 -0.1336 43 1 7.3413 4.1223 -0.8451 44 1 5.4899 6.1067 0.3157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160728755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:31 Heat of formation + Delta-G solvation = -21.435336 kcal Electronic energy + Delta-G solvation = -24313.711551 eV Core-core repulsion = 21072.833497 eV Total energy + Delta-G solvation = -3240.878053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28882 -37.78509 -35.38127 -34.56137 -33.98001 -31.27167 -30.73034 -28.59973 -27.56905 -26.03862 -24.41569 -23.44499 -21.99776 -21.20568 -20.62504 -19.67694 -18.77338 -17.30937 -16.00510 -15.92916 -15.40842 -14.71607 -14.65909 -14.53898 -14.04200 -13.72051 -13.51449 -13.01148 -12.89658 -12.77694 -12.33779 -12.29985 -11.98924 -11.91297 -11.65353 -11.27646 -11.13317 -10.90587 -10.71236 -10.66710 -10.60700 -10.54709 -10.49604 -10.32119 -10.19298 -9.94630 -9.54131 -8.95868 -8.60750 -8.52350 -7.67514 -7.46409 -6.37840 -3.77313 3.36745 3.40928 3.56410 3.73973 4.30375 4.36814 4.56443 4.67577 5.01082 5.14960 5.17582 5.38689 5.40967 5.44299 5.52178 5.55873 5.62655 5.67565 5.74072 5.78631 5.95331 5.98761 6.06530 6.17949 6.18295 6.21670 6.27980 6.30502 6.35302 6.41212 6.52024 6.59734 6.61622 6.66471 6.71583 6.95724 7.08483 7.35270 7.46929 7.88372 7.96275 8.24507 8.61026 9.20303 9.61050 9.92209 10.88222 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013331 B = 0.008295 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.930951 B = 3374.576265 C = 4641.124723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.105 3.895 5 N -0.434 5.434 6 C -0.368 4.368 7 H 0.080 0.920 8 C 0.012 3.988 9 N -0.888 5.888 10 Si 1.073 2.927 11 H -0.288 1.288 12 H -0.286 1.286 13 H -0.287 1.287 14 C 0.491 3.509 15 O -0.612 6.612 16 C 0.080 3.920 17 C 0.050 3.950 18 N -0.671 5.671 19 C 0.050 3.950 20 C -0.138 4.138 21 H 0.097 0.903 22 C -0.150 4.150 23 C 0.046 3.954 24 N -0.612 5.612 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.272 0.728 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.340 0.660 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 5.619 -3.647 7.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.019 4.019 5 N -0.150 5.150 6 C -0.496 4.496 7 H 0.098 0.902 8 C -0.194 4.194 9 N -0.523 5.523 10 Si 0.901 3.099 11 H -0.215 1.215 12 H -0.212 1.212 13 H -0.214 1.214 14 C 0.279 3.721 15 O -0.499 6.499 16 C -0.016 4.016 17 C -0.080 4.080 18 N -0.297 5.297 19 C -0.080 4.080 20 C -0.160 4.160 21 H 0.115 0.885 22 C -0.190 4.190 23 C -0.084 4.084 24 N -0.240 5.240 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.155 0.845 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.596 5.050 -2.074 6.045 hybrid contribution 0.147 0.237 -2.177 2.195 sum -2.449 5.288 -4.251 7.213 Atomic orbital electron populations 1.21746 0.96430 1.00791 1.01528 1.21451 0.95213 0.97601 1.01638 1.21829 0.97043 0.95674 1.01518 1.21425 0.92498 0.85866 1.02062 1.43470 1.54767 1.11403 1.05373 1.19917 1.39877 0.99693 0.90145 0.90250 1.26077 0.92142 0.96644 1.04562 1.70687 1.30553 1.27193 1.23861 0.83431 0.76037 0.75779 0.74629 1.21490 1.21189 1.21353 1.19937 0.80134 0.87980 0.84074 1.90508 1.58904 1.67844 1.32622 1.22782 0.94069 0.94874 0.89888 1.23661 0.97105 0.96410 0.90812 1.63827 1.15611 1.47171 1.03080 1.23021 0.88973 0.97199 0.98797 1.23598 0.95260 0.99015 0.98090 0.88472 1.23212 0.96471 0.99854 0.99466 1.23124 0.92740 1.00712 0.91784 1.62871 0.99913 1.34082 1.27170 0.93128 0.93327 0.92893 0.92509 0.92093 0.91811 0.93087 0.92662 0.89748 0.91652 0.90121 0.89760 0.84523 0.90634 0.91222 0.91752 0.91594 0.91298 0.90765 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.99 5.93 -26.73 -0.16 -2.15 16 3 C -0.12 -2.41 5.54 -26.73 -0.15 -2.56 16 4 C 0.11 2.43 4.51 -4.04 -0.02 2.41 16 5 N -0.43 -10.46 2.20 -114.81 -0.25 -10.71 16 6 C -0.37 -8.97 6.90 -14.93 -0.10 -9.07 16 7 H 0.08 1.91 6.57 -52.49 -0.34 1.56 16 8 C 0.01 0.31 4.89 -17.47 -0.09 0.22 16 9 N -0.89 -24.41 12.54 55.50 0.70 -23.71 16 10 Si 1.07 23.02 29.97 -169.99 -5.09 17.92 16 11 H -0.29 -6.06 7.11 56.52 0.40 -5.65 16 12 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.29 -5.86 7.11 56.52 0.40 -5.46 16 14 C 0.49 11.56 6.70 -10.98 -0.07 11.49 16 15 O -0.61 -15.77 15.28 5.54 0.08 -15.69 16 16 C 0.08 1.54 0.62 -130.42 -0.08 1.46 16 17 C 0.05 0.87 6.37 -0.84 -0.01 0.86 16 18 N -0.67 -10.63 7.67 -107.89 -0.83 -11.45 16 19 C 0.05 0.73 7.04 -2.26 -0.02 0.72 16 20 C -0.14 -2.35 3.46 -88.18 -0.30 -2.66 16 21 H 0.10 1.92 7.02 -51.93 -0.36 1.55 16 22 C -0.15 -2.23 6.62 -24.99 -0.17 -2.39 16 23 C 0.05 0.80 7.54 -1.95 -0.01 0.78 16 24 N -0.61 -11.57 4.28 -96.42 -0.41 -11.99 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 1.33 7.37 -51.93 -0.38 0.95 16 33 H 0.08 2.08 5.85 -51.93 -0.30 1.78 16 34 H 0.27 7.78 6.98 -40.82 -0.28 7.50 16 35 H 0.08 1.51 7.88 -51.93 -0.41 1.10 16 36 H 0.08 1.33 7.22 -51.93 -0.38 0.96 16 37 H 0.34 5.55 8.94 -39.29 -0.35 5.20 16 38 H 0.08 1.02 7.26 -51.93 -0.38 0.64 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.84 7.26 -51.93 -0.38 0.46 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.33 5.52 7.74 -39.29 -0.30 5.21 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -28.37 338.93 -8.82 -37.19 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -7.32 Total: 15.89 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.81 Total: -2.56 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.80 Total: -57.87 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.08 Total: -15.69 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.09 Total: 17.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.37 -8.82 -37.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160728755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.758 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds