Wall clock time and date at job start Tue Mar 31 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47265 * 2 1 4 4 C 1.52994 * 109.47328 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47357 * 185.68608 * 4 3 2 6 6 C 1.37103 * 120.00177 * 277.32419 * 5 4 3 7 7 H 1.08005 * 119.99680 * 348.56486 * 6 5 4 8 8 C 1.38940 * 120.00318 * 168.55719 * 6 5 4 9 9 N 1.31420 * 119.99809 * 77.78535 * 8 6 5 10 10 Si 1.86795 * 120.00661 * 257.78620 * 8 6 5 11 11 H 1.48498 * 109.47038 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47326 * 119.99777 * 10 8 6 13 13 H 1.48509 * 109.47237 * 240.00241 * 10 8 6 14 14 C 1.34773 * 120.00139 * 97.32376 * 5 4 3 15 15 O 1.21293 * 119.99976 * 192.76179 * 14 5 4 16 16 C 1.50697 * 119.99932 * 12.76130 * 14 5 4 17 17 C 1.55845 * 115.58123 * 281.97600 * 16 14 5 18 18 C 1.54838 * 103.65734 * 159.72333 * 17 16 14 19 19 C 1.55848 * 103.51881 * 359.92243 * 18 17 16 20 20 H 1.09006 * 115.58294 * 200.35046 * 19 18 17 21 21 N 1.50643 * 101.02998 * 327.00777 * 19 18 17 22 22 C 1.55845 * 105.02995 * 71.73094 * 19 18 17 23 23 H 1.09000 * 110.61210 * 169.60531 * 22 19 18 24 24 N 1.46893 * 110.61689 * 46.77804 * 22 19 18 25 25 C 1.54837 * 103.51770 * 288.26605 * 22 19 18 26 26 H 1.09002 * 109.47157 * 59.99952 * 1 2 3 27 27 H 1.08994 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46917 * 300.00405 * 1 2 3 29 29 H 1.09000 * 109.46958 * 240.00139 * 2 1 3 30 30 H 1.09002 * 109.47157 * 120.00048 * 2 1 3 31 31 H 1.09008 * 109.46807 * 59.99921 * 3 2 1 32 32 H 1.09002 * 109.47072 * 300.00100 * 3 2 1 33 33 H 1.08999 * 109.46948 * 65.68271 * 4 3 2 34 34 H 1.09002 * 109.47195 * 305.68496 * 4 3 2 35 35 H 0.97003 * 120.00505 * 184.90864 * 9 8 6 36 36 H 1.08997 * 110.61391 * 41.14143 * 17 16 14 37 37 H 1.08992 * 110.61504 * 278.30514 * 17 16 14 38 38 H 1.08998 * 110.61197 * 118.43211 * 18 17 16 39 39 H 1.09005 * 110.61455 * 241.41279 * 18 17 16 40 40 H 1.00899 * 111.00509 * 170.23970 * 21 19 18 41 41 H 1.00903 * 111.00238 * 55.15574 * 24 22 19 42 42 H 1.00907 * 111.00452 * 179.11039 * 24 22 19 43 43 H 1.09003 * 110.61128 * 118.51274 * 25 22 19 44 44 H 1.09000 * 110.61704 * 241.33244 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8169 0.1375 6 6 4.1446 3.6268 -0.9654 7 1 4.0324 3.2066 -1.9540 8 6 4.3761 4.9881 -0.8113 9 7 5.5878 5.4226 -0.5466 10 14 2.9653 6.2006 -0.9804 11 1 1.7115 5.4628 -1.2783 12 1 2.8065 6.9554 0.2886 13 1 3.2565 7.1477 -2.0867 14 6 4.4227 3.2852 1.3475 15 8 4.6041 4.4737 1.5084 16 6 4.6048 2.3324 2.5007 17 6 3.2918 1.8396 3.1803 18 6 3.7226 0.5450 3.9124 19 6 5.2398 0.4246 3.5771 20 1 5.6700 -0.5703 3.6931 21 7 5.2766 1.0149 2.1916 22 6 5.9268 1.5549 4.4011 23 1 7.0106 1.4413 4.3791 24 7 5.4367 1.5564 5.7859 25 6 5.4961 2.8495 3.6690 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 1.0192 -0.9356 34 1 3.9330 0.8432 0.8356 35 1 5.7373 6.3644 -0.3687 36 1 2.5305 1.6215 2.4313 37 1 2.9271 2.5797 3.8923 38 1 3.5739 0.6446 4.9876 39 1 3.1748 -0.3147 3.5263 40 1 6.2270 1.1575 1.8843 41 1 5.5593 0.6509 6.2139 42 1 5.8885 2.2771 6.3287 43 1 4.9188 3.4923 4.3336 44 1 6.3667 3.3806 3.2842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160732067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:19 Heat of formation + Delta-G solvation = 15.993090 kcal Electronic energy + Delta-G solvation = -24392.971872 eV Core-core repulsion = 21153.716837 eV Total energy + Delta-G solvation = -3239.255035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.47215 -37.68120 -35.27909 -33.39318 -33.25102 -32.02974 -30.02208 -29.11867 -28.10662 -27.05501 -24.70197 -22.95311 -21.57883 -21.11157 -20.41271 -19.49415 -18.32336 -17.26820 -16.09144 -15.77862 -15.24699 -15.05069 -14.47130 -14.34717 -13.91396 -13.68706 -13.65415 -13.08908 -12.60310 -12.29764 -12.21402 -12.11319 -12.01035 -11.67296 -11.57728 -11.43224 -11.10669 -10.94957 -10.78491 -10.67064 -10.61795 -10.50112 -10.44709 -10.27340 -9.97275 -9.80930 -9.56926 -8.68916 -8.63470 -8.30091 -7.89430 -7.20003 -6.62414 -3.22119 3.42943 3.64949 3.66793 4.05898 4.37581 4.40759 4.56295 4.86661 4.89497 5.03660 5.11117 5.22335 5.37052 5.40529 5.53280 5.59119 5.62003 5.70646 5.82958 5.94343 5.96698 6.01601 6.07455 6.16654 6.27711 6.34299 6.38641 6.40796 6.45566 6.48598 6.56152 6.61664 6.65348 6.74375 6.89362 7.00036 7.19297 7.25252 7.40494 7.55259 7.58723 8.18201 9.00810 9.41503 9.79494 10.40628 10.49194 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.008404 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.984935 B = 3331.092076 C = 4747.332727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.132 4.132 4 C 0.088 3.912 5 N -0.405 5.405 6 C -0.477 4.477 7 H 0.095 0.905 8 C 0.200 3.800 9 N -0.692 5.692 10 Si 0.787 3.213 11 H -0.268 1.268 12 H -0.278 1.278 13 H -0.291 1.291 14 C 0.431 3.569 15 O -0.567 6.567 16 C 0.085 3.915 17 C -0.108 4.108 18 C -0.104 4.104 19 C 0.046 3.954 20 H 0.106 0.894 21 N -0.633 5.633 22 C 0.054 3.946 23 H 0.036 0.964 24 N -0.833 5.833 25 C -0.118 4.118 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.270 0.730 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.331 0.669 41 H 0.336 0.664 42 H 0.338 0.662 43 H 0.078 0.922 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 -11.905 8.754 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.170 4.170 4 C -0.037 4.037 5 N -0.121 5.121 6 C -0.592 4.592 7 H 0.113 0.887 8 C -0.029 4.029 9 N -0.314 5.314 10 Si 0.607 3.393 11 H -0.192 1.192 12 H -0.203 1.203 13 H -0.218 1.218 14 C 0.221 3.779 15 O -0.451 6.451 16 C -0.009 4.009 17 C -0.146 4.146 18 C -0.142 4.142 19 C -0.065 4.065 20 H 0.123 0.877 21 N -0.261 5.261 22 C -0.059 4.059 23 H 0.054 0.946 24 N -0.363 5.363 25 C -0.158 4.158 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.096 0.904 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.328 -11.485 8.048 14.216 hybrid contribution 0.941 1.110 0.781 1.652 sum -1.386 -10.375 8.829 13.694 Atomic orbital electron populations 1.21768 0.96631 1.00674 1.01680 1.21455 0.95068 0.97644 1.01540 1.22030 0.97573 0.95234 1.02179 1.21998 0.92542 0.85660 1.03517 1.43310 1.52664 1.10318 1.05771 1.18270 1.65208 0.89370 0.86386 0.88698 1.24550 0.93501 0.97127 0.87705 1.70833 1.23266 1.16961 1.20303 0.88176 0.91080 0.82573 0.77518 1.19249 1.20314 1.21799 1.18472 0.88499 0.87868 0.83097 1.90520 1.57295 1.15652 1.81655 1.23607 0.94945 0.88566 0.93813 1.22688 0.96494 0.96692 0.98732 1.22497 0.93446 0.97283 1.00960 1.24325 0.97346 0.96241 0.88584 0.87659 1.66071 1.21154 1.18235 1.20645 1.23217 0.95776 0.97428 0.89484 0.94641 1.58799 1.65090 1.09514 1.02893 1.22963 1.00173 0.95841 0.96834 0.92964 0.93427 0.93035 0.92415 0.92234 0.92458 0.91973 0.93088 0.86598 0.91869 0.90867 0.91796 0.89765 0.92353 0.85399 0.85132 0.84958 0.90380 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.85 16 3 C -0.13 -2.40 4.95 -26.73 -0.13 -2.53 16 4 C 0.09 1.78 4.82 -4.05 -0.02 1.76 16 5 N -0.40 -10.18 2.64 -114.82 -0.30 -10.48 16 6 C -0.48 -13.42 9.46 -14.93 -0.14 -13.56 16 7 H 0.10 2.66 8.06 -52.48 -0.42 2.24 16 8 C 0.20 5.73 3.08 -17.47 -0.05 5.68 16 9 N -0.69 -20.14 12.51 55.50 0.69 -19.45 16 10 Si 0.79 20.90 29.53 -169.99 -5.02 15.88 16 11 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16 13 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 14 C 0.43 10.92 7.09 -10.99 -0.08 10.85 16 15 O -0.57 -16.68 13.10 5.55 0.07 -16.61 16 16 C 0.08 1.65 1.05 -127.40 -0.13 1.52 16 17 C -0.11 -1.85 5.60 -24.24 -0.14 -1.99 16 18 C -0.10 -1.41 6.32 -24.24 -0.15 -1.57 16 19 C 0.05 0.60 5.42 -62.56 -0.34 0.26 16 20 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 21 N -0.63 -10.39 4.96 -82.78 -0.41 -10.80 16 22 C 0.05 0.72 3.83 -65.23 -0.25 0.47 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 N -0.83 -9.10 7.52 -2.57 -0.02 -9.12 16 25 C -0.12 -2.12 5.37 -24.28 -0.13 -2.25 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.10 6.32 -51.92 -0.33 0.77 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.12 2.17 4.06 -51.93 -0.21 1.96 16 35 H 0.27 7.41 8.32 -40.82 -0.34 7.07 16 36 H 0.07 1.30 4.89 -51.93 -0.25 1.05 16 37 H 0.06 1.14 7.82 -51.93 -0.41 0.73 16 38 H 0.08 1.09 6.66 -51.93 -0.35 0.74 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.33 5.58 8.66 -39.29 -0.34 5.24 16 41 H 0.34 2.93 9.02 -39.29 -0.35 2.57 16 42 H 0.34 3.40 9.08 -39.29 -0.36 3.04 16 43 H 0.08 1.46 7.66 -51.93 -0.40 1.07 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -31.66 334.46 -8.50 -40.17 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.20 Total: 10.12 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.36 Total: -4.75 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.04 Total: -49.85 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.07 Total: -16.61 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.66 -8.50 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160732067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.159 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds