Wall clock time and date at job start Tue Mar 31 2020 05:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48496 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47143 * 300.00899 * 3 2 1 6 6 H 1.48502 * 109.46934 * 60.00571 * 3 2 1 7 7 C 1.38815 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99375 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99719 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46833 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46936 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47121 * 180.02562 * 12 11 10 14 14 C 1.34767 * 120.00071 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00366 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00145 * 179.97438 * 14 13 12 17 17 C 1.54136 * 110.75025 * 206.01140 * 16 14 13 18 18 C 1.55167 * 102.88651 * 98.16228 * 17 16 14 19 19 C 1.54839 * 101.65616 * 36.15655 * 18 17 16 20 20 N 1.47860 * 111.38143 * 325.29591 * 16 14 13 21 21 C 1.47955 * 108.37129 * 120.68565 * 20 16 14 22 22 C 1.54838 * 105.06727 * 337.18331 * 21 20 16 23 23 C 1.54138 * 110.74328 * 84.57230 * 16 14 13 24 24 H 0.97004 * 120.00160 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00005 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.46588 * 60.00086 * 10 9 7 27 27 H 1.09000 * 109.46912 * 300.00184 * 10 9 7 28 28 H 1.09003 * 109.46779 * 60.00225 * 11 10 9 29 29 H 1.08999 * 109.47229 * 300.00074 * 11 10 9 30 30 H 1.09006 * 109.46651 * 60.00240 * 12 11 10 31 31 H 1.09000 * 109.47016 * 300.00577 * 12 11 10 32 32 H 0.97001 * 119.99695 * 0.02562 * 13 12 11 33 33 H 1.08998 * 110.72897 * 339.81954 * 17 16 14 34 34 H 1.08992 * 110.73658 * 216.50984 * 17 16 14 35 35 H 1.08996 * 110.99289 * 154.25063 * 18 17 16 36 36 H 1.09007 * 110.98542 * 278.06801 * 18 17 16 37 37 H 1.09001 * 110.32292 * 82.22949 * 19 18 17 38 38 H 1.08999 * 110.32238 * 204.43614 * 19 18 17 39 39 H 1.09008 * 110.31806 * 218.28753 * 21 20 16 40 40 H 1.08998 * 110.40931 * 96.13165 * 21 20 16 41 41 H 1.08995 * 110.98861 * 278.58014 * 22 21 20 42 42 H 1.09003 * 110.98607 * 154.76795 * 22 21 20 43 43 H 1.08997 * 110.73153 * 20.19181 * 23 16 14 44 44 H 1.09007 * 110.73010 * 143.48855 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8198 0.0001 12 6 1.8287 -6.1448 -0.0005 13 7 0.8767 -7.2583 -0.0005 14 6 1.3259 -8.5289 -0.0005 15 8 2.5183 -8.7506 -0.0010 16 6 0.3466 -9.6743 0.0000 17 6 0.9766 -10.9311 0.6321 18 6 0.4371 -10.8946 2.0865 19 6 -0.9928 -10.3390 1.8758 20 7 -0.8637 -9.3484 0.7844 21 6 -2.0388 -9.4458 -0.1093 22 6 -1.4733 -9.2630 -1.5391 23 6 -0.1124 -10.0009 -1.4347 24 1 -0.4850 0.8401 0.0004 25 1 0.3554 -2.3881 -0.0005 26 1 2.6846 -3.7145 0.8895 27 1 2.6846 -3.7145 -0.8905 28 1 0.4367 -4.7622 -0.8897 29 1 0.4374 -4.7618 0.8903 30 1 2.4560 -6.2025 0.8891 31 1 2.4548 -6.2024 -0.8909 32 1 -0.0770 -7.0810 -0.0005 33 1 2.0645 -10.8638 0.6224 34 1 0.6401 -11.8315 0.1183 35 1 0.4075 -11.8954 2.5172 36 1 1.0300 -10.2217 2.7061 37 1 -1.6707 -11.1402 1.5816 38 1 -1.3489 -9.8556 2.7855 39 1 -2.7543 -8.6556 0.1187 40 1 -2.5111 -10.4232 -0.0110 41 1 -1.3285 -8.2076 -1.7697 42 1 -2.1191 -9.7376 -2.2780 43 1 0.5959 -9.6094 -2.1649 44 1 -0.2453 -11.0753 -1.5622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161789270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:35 Heat of formation + Delta-G solvation = -27.607201 kcal Electronic energy + Delta-G solvation = -22359.407370 eV Core-core repulsion = 19118.261684 eV Total energy + Delta-G solvation = -3241.145686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14631 -38.54274 -35.97464 -34.51179 -34.03979 -31.91796 -31.63046 -29.64062 -28.44138 -25.81954 -25.30539 -23.06630 -21.97215 -21.62006 -21.09450 -21.04151 -19.23807 -17.60543 -16.93028 -16.47014 -15.79865 -15.44916 -15.27073 -14.66242 -14.56562 -14.25575 -14.05312 -13.75590 -13.36144 -13.22661 -12.95614 -12.77747 -12.43214 -12.24586 -11.91602 -11.80624 -11.59459 -11.43394 -11.28354 -11.16817 -10.90052 -10.89473 -10.73768 -10.72650 -10.56447 -10.04549 -9.86666 -9.67728 -8.89397 -8.85550 -8.82146 -6.90407 -5.74849 -3.03457 2.61128 3.27254 3.45270 3.50992 3.53350 3.55654 4.13377 4.15110 4.41653 4.61266 4.61557 4.68591 4.78135 4.84755 5.00511 5.13875 5.20581 5.22689 5.35373 5.38644 5.43430 5.51363 5.53645 5.60373 5.61572 5.66814 5.71160 5.78674 5.81714 5.92241 6.07769 6.13680 6.25015 6.37204 6.39052 6.55320 6.63224 6.84165 6.88364 7.66244 7.73101 8.32600 8.44224 9.55352 10.13030 10.47876 11.48297 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030454 B = 0.002911 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.192167 B = 9616.054667 C = 9892.530661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.136 4.136 12 C 0.121 3.879 13 N -0.710 5.710 14 C 0.540 3.460 15 O -0.549 6.549 16 C 0.069 3.931 17 C -0.126 4.126 18 C -0.133 4.133 19 C 0.035 3.965 20 N -0.505 5.505 21 C 0.031 3.969 22 C -0.136 4.136 23 C -0.126 4.126 24 H 0.254 0.746 25 H 0.384 0.616 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.406 0.594 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -26.124 -0.036 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.174 4.174 12 C -0.003 4.003 13 N -0.360 5.360 14 C 0.324 3.676 15 O -0.427 6.427 16 C -0.024 4.024 17 C -0.165 4.165 18 C -0.171 4.171 19 C -0.092 4.092 20 N -0.230 5.230 21 C -0.097 4.097 22 C -0.174 4.174 23 C -0.165 4.165 24 H 0.064 0.936 25 H 0.217 0.783 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.241 0.759 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.098 -25.580 0.197 25.906 hybrid contribution -0.473 0.286 -0.306 0.632 sum -4.571 -25.294 -0.109 25.704 Atomic orbital electron populations 1.69672 1.05124 1.25516 1.58012 1.24751 0.95557 0.97735 1.03098 0.86098 0.78819 0.84027 0.77165 1.20511 1.21871 1.21857 1.19302 0.91134 0.84139 1.42375 0.91057 1.42353 1.05883 1.00009 1.89563 1.20525 0.93293 0.85215 0.98138 1.21926 0.99506 0.93311 1.02696 1.21362 0.91860 0.84844 1.02222 1.45945 1.11020 1.05315 1.73739 1.19924 0.88443 0.83736 0.75498 1.90681 1.16469 1.84717 1.50808 1.22397 0.91388 0.93887 0.94755 1.22832 1.03048 0.95217 0.95387 1.22794 0.95818 1.01560 0.96944 1.23299 0.97111 0.93317 0.95504 1.65275 1.01020 1.47313 1.09361 1.23361 0.93299 1.01456 0.91544 1.22847 0.95930 1.01728 0.96853 1.22852 0.97572 1.01281 0.94749 0.93588 0.78298 0.96077 0.96106 0.91437 0.91249 0.91504 0.91560 0.75907 0.88715 0.90659 0.90490 0.90492 0.92830 0.89708 0.89408 0.92751 0.90195 0.90162 0.90197 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.73 -19.06 5.60 -59.90 -0.34 -19.39 16 10 C 0.16 3.22 6.26 -4.04 -0.03 3.19 16 11 C -0.14 -2.20 5.44 -26.73 -0.15 -2.34 16 12 C 0.12 1.77 5.67 -4.04 -0.02 1.75 16 13 N -0.71 -9.29 5.48 -60.30 -0.33 -9.62 16 14 C 0.54 7.38 6.68 -10.99 -0.07 7.31 16 15 O -0.55 -9.37 15.66 5.56 0.09 -9.28 16 16 C 0.07 0.70 0.91 -131.04 -0.12 0.58 16 17 C -0.13 -1.17 5.99 -24.99 -0.15 -1.32 16 18 C -0.13 -1.09 7.07 -24.61 -0.17 -1.27 16 19 C 0.04 0.28 6.72 -2.27 -0.02 0.26 16 20 N -0.50 -4.60 4.79 -214.06 -1.03 -5.63 16 21 C 0.03 0.22 6.72 -2.27 -0.02 0.21 16 22 C -0.14 -0.97 7.07 -24.62 -0.17 -1.14 16 23 C -0.13 -1.05 6.03 -24.99 -0.15 -1.20 16 24 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.41 4.75 7.92 -40.82 -0.32 4.43 16 33 H 0.09 1.07 6.85 -51.93 -0.36 0.71 16 34 H 0.07 0.56 7.30 -51.93 -0.38 0.19 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.35 7.08 -51.93 -0.37 -0.02 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.05 0.34 7.08 -51.93 -0.37 -0.03 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.74 7.84 -51.93 -0.41 0.34 16 44 H 0.08 0.56 7.30 -51.93 -0.38 0.18 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -32.91 348.41 -9.48 -42.39 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.51 Total: 7.98 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.31 Total: -1.52 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.97 Total: -62.51 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.91 -9.48 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161789270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.778 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds