Wall clock time and date at job start Tue Mar 31 2020 05:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48496 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47143 * 300.00899 * 3 2 1 6 6 H 1.48502 * 109.46934 * 60.00571 * 3 2 1 7 7 C 1.38815 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99375 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99719 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46833 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46936 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47121 * 180.02562 * 12 11 10 14 14 C 1.34767 * 120.00071 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00366 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00145 * 179.97438 * 14 13 12 17 17 C 1.54136 * 110.75025 * 206.01140 * 16 14 13 18 18 C 1.55167 * 102.88651 * 98.16228 * 17 16 14 19 19 C 1.54839 * 101.65616 * 36.15655 * 18 17 16 20 20 N 1.47860 * 111.38143 * 325.29591 * 16 14 13 21 21 C 1.47955 * 108.37129 * 120.68565 * 20 16 14 22 22 C 1.54838 * 105.06727 * 337.18331 * 21 20 16 23 23 C 1.54138 * 110.74328 * 84.57230 * 16 14 13 24 24 H 0.97004 * 120.00160 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00005 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.46588 * 60.00086 * 10 9 7 27 27 H 1.09000 * 109.46912 * 300.00184 * 10 9 7 28 28 H 1.09003 * 109.46779 * 60.00225 * 11 10 9 29 29 H 1.08999 * 109.47229 * 300.00074 * 11 10 9 30 30 H 1.09006 * 109.46651 * 60.00240 * 12 11 10 31 31 H 1.09000 * 109.47016 * 300.00577 * 12 11 10 32 32 H 0.97001 * 119.99695 * 0.02562 * 13 12 11 33 33 H 1.08998 * 110.72897 * 339.81954 * 17 16 14 34 34 H 1.08992 * 110.73658 * 216.50984 * 17 16 14 35 35 H 1.08996 * 110.99289 * 154.25063 * 18 17 16 36 36 H 1.09007 * 110.98542 * 278.06801 * 18 17 16 37 37 H 1.09001 * 110.32292 * 82.22949 * 19 18 17 38 38 H 1.08999 * 110.32238 * 204.43614 * 19 18 17 39 39 H 1.09008 * 110.31806 * 218.28753 * 21 20 16 40 40 H 1.08998 * 110.40931 * 96.13165 * 21 20 16 41 41 H 1.08995 * 110.98861 * 278.58014 * 22 21 20 42 42 H 1.09003 * 110.98607 * 154.76795 * 22 21 20 43 43 H 1.08997 * 110.73153 * 20.19181 * 23 16 14 44 44 H 1.09007 * 110.73010 * 143.48855 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8198 0.0001 12 6 1.8287 -6.1448 -0.0005 13 7 0.8767 -7.2583 -0.0005 14 6 1.3259 -8.5289 -0.0005 15 8 2.5183 -8.7506 -0.0010 16 6 0.3466 -9.6743 0.0000 17 6 0.9766 -10.9311 0.6321 18 6 0.4371 -10.8946 2.0865 19 6 -0.9928 -10.3390 1.8758 20 7 -0.8637 -9.3484 0.7844 21 6 -2.0388 -9.4458 -0.1093 22 6 -1.4733 -9.2630 -1.5391 23 6 -0.1124 -10.0009 -1.4347 24 1 -0.4850 0.8401 0.0004 25 1 0.3554 -2.3881 -0.0005 26 1 2.6846 -3.7145 0.8895 27 1 2.6846 -3.7145 -0.8905 28 1 0.4367 -4.7622 -0.8897 29 1 0.4374 -4.7618 0.8903 30 1 2.4560 -6.2025 0.8891 31 1 2.4548 -6.2024 -0.8909 32 1 -0.0770 -7.0810 -0.0005 33 1 2.0645 -10.8638 0.6224 34 1 0.6401 -11.8315 0.1183 35 1 0.4075 -11.8954 2.5172 36 1 1.0300 -10.2217 2.7061 37 1 -1.6707 -11.1402 1.5816 38 1 -1.3489 -9.8556 2.7855 39 1 -2.7543 -8.6556 0.1187 40 1 -2.5111 -10.4232 -0.0110 41 1 -1.3285 -8.2076 -1.7697 42 1 -2.1191 -9.7376 -2.2780 43 1 0.5959 -9.6094 -2.1649 44 1 -0.2453 -11.0753 -1.5622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161789270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:34 Heat of formation + Delta-G solvation = -51.506131 kcal Electronic energy + Delta-G solvation = -22360.443705 eV Core-core repulsion = 19118.261684 eV Total energy + Delta-G solvation = -3242.182021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95984 -39.54929 -37.51441 -35.94863 -34.88375 -33.68936 -32.38396 -31.28852 -29.25682 -26.99687 -26.42002 -24.73324 -22.95214 -22.56619 -22.47887 -21.66090 -20.26930 -19.13794 -18.33424 -17.31819 -16.97710 -16.64251 -16.50089 -16.03126 -15.53984 -15.30932 -15.22332 -15.13313 -14.76312 -14.38373 -14.08287 -13.82797 -13.36416 -13.27536 -13.13535 -12.84373 -12.61060 -12.52505 -12.47306 -12.40255 -12.09827 -12.05969 -12.04315 -11.92474 -11.81518 -11.75895 -11.36101 -10.96433 -10.91624 -10.06557 -9.50147 -9.02816 -7.96974 -5.26457 1.47670 1.48495 1.57047 1.58982 2.20913 2.56198 2.87052 3.36840 3.44069 3.49281 3.73351 3.75939 3.98059 4.00406 4.05873 4.09640 4.20442 4.28063 4.42565 4.45263 4.54135 4.63632 4.68320 4.71173 4.72638 4.83737 4.85634 4.90372 4.97549 5.04726 5.06386 5.14851 5.20745 5.23633 5.27171 5.29627 5.46863 5.48604 5.74129 5.97974 6.25694 6.59879 7.25429 7.32018 8.06050 8.30631 9.26789 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030454 B = 0.002911 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.192167 B = 9616.054667 C = 9892.530661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.153 3.847 11 C -0.116 4.116 12 C 0.132 3.868 13 N -0.704 5.704 14 C 0.533 3.467 15 O -0.589 6.589 16 C 0.071 3.929 17 C -0.126 4.126 18 C -0.131 4.131 19 C 0.037 3.963 20 N -0.521 5.521 21 C 0.032 3.968 22 C -0.132 4.132 23 C -0.123 4.123 24 H 0.253 0.747 25 H 0.376 0.624 26 H 0.021 0.979 27 H 0.023 0.977 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.414 0.586 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 -27.416 -0.227 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.026 3.974 11 C -0.154 4.154 12 C 0.007 3.993 13 N -0.354 5.354 14 C 0.319 3.681 15 O -0.469 6.469 16 C -0.022 4.022 17 C -0.165 4.165 18 C -0.169 4.169 19 C -0.090 4.090 20 N -0.246 5.246 21 C -0.095 4.095 22 C -0.170 4.170 23 C -0.162 4.162 24 H 0.061 0.939 25 H 0.208 0.792 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.251 0.749 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.957 -26.900 0.008 27.353 hybrid contribution -0.177 0.640 -0.234 0.704 sum -5.134 -26.259 -0.226 26.757 Atomic orbital electron populations 1.69817 1.06577 1.26148 1.59338 1.25597 0.96493 1.01166 1.03460 0.85043 0.78167 0.79558 0.76802 1.19156 1.21786 1.21822 1.19688 0.91562 0.85396 1.41511 0.90732 1.42548 1.05733 1.01146 1.89541 1.20666 0.94016 0.84732 0.97946 1.21672 0.98430 0.92241 1.03036 1.21103 0.91814 0.84745 1.01633 1.45867 1.11137 1.04967 1.73437 1.20681 0.88684 0.84481 0.74241 1.90656 1.18428 1.85313 1.52531 1.22315 0.91201 0.92336 0.96374 1.22845 1.01456 0.95765 0.96400 1.22785 0.95813 1.02312 0.96005 1.23339 0.96976 0.93611 0.95110 1.65195 1.01208 1.48235 1.09984 1.23414 0.92548 1.02578 0.90939 1.22847 0.95511 1.01094 0.97512 1.22874 0.97776 1.02640 0.92931 0.93863 0.79237 0.96117 0.95917 0.90846 0.91104 0.92390 0.91966 0.74945 0.91292 0.88267 0.88324 0.92770 0.90656 0.89774 0.89187 0.90935 0.91350 0.88152 0.91638 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.65 13.06 21.65 0.28 -59.36 16 2 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -38.94 5.60 -343.43 -1.92 -40.87 16 10 C 0.15 6.30 6.26 86.38 0.54 6.84 16 11 C -0.12 -3.69 5.44 30.59 0.17 -3.52 16 12 C 0.13 3.86 5.67 86.38 0.49 4.35 16 13 N -0.70 -18.26 5.48 -463.07 -2.54 -20.80 16 14 C 0.53 14.62 6.68 87.66 0.59 15.21 16 15 O -0.59 -20.65 15.66 -3.03 -0.05 -20.70 16 16 C 0.07 1.36 0.91 3.37 0.00 1.36 16 17 C -0.13 -2.20 5.99 31.72 0.19 -2.01 16 18 C -0.13 -1.97 7.07 31.97 0.23 -1.75 16 19 C 0.04 0.49 6.72 86.73 0.58 1.07 16 20 N -0.52 -8.54 4.79 -831.16 -3.98 -12.52 16 21 C 0.03 0.38 6.72 86.73 0.58 0.96 16 22 C -0.13 -1.57 7.07 31.96 0.23 -1.34 16 23 C -0.12 -1.83 6.03 31.72 0.19 -1.64 16 24 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 25 H 0.38 20.47 7.67 -92.71 -0.71 19.76 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.41 9.39 7.92 -92.71 -0.73 8.66 16 33 H 0.07 1.58 6.85 -2.39 -0.02 1.56 16 34 H 0.10 1.23 7.30 -2.39 -0.02 1.21 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.08 0.69 7.08 -2.39 -0.02 0.68 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.07 0.61 7.08 -2.39 -0.02 0.59 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 1.16 7.84 -2.39 -0.02 1.15 16 44 H 0.10 1.09 7.30 -2.38 -0.02 1.07 16 Total: -1.00 -70.62 348.41 -1.54 -72.16 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: -0.45 Total: 31.26 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.09 Total: 2.15 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -8.16 Total: -133.55 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.05 Total: -20.70 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -70.62 -1.54 -72.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161789270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.652 kcal (2) G-P(sol) polarization free energy of solvation -70.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds