Wall clock time and date at job start Tue Mar 31 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99914 * 2 1 4 4 O 1.20832 * 119.99786 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00080 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.43868 * 57.45673 * 5 3 2 7 7 C 1.54895 * 110.59973 * 294.83642 * 5 3 2 8 8 C 1.54888 * 102.74806 * 203.32300 * 7 5 3 9 9 C 1.54269 * 104.19528 * 37.94835 * 8 7 5 10 10 H 1.08990 * 110.07682 * 95.69363 * 9 8 7 11 11 N 1.46898 * 110.02720 * 217.10417 * 9 8 7 12 12 C 1.46905 * 110.99825 * 272.16183 * 11 9 8 13 13 H 1.08991 * 109.35614 * 324.82491 * 12 11 9 14 14 C 1.52960 * 109.41418 * 84.64982 * 12 11 9 15 15 C 1.53229 * 109.40641 * 183.70627 * 14 12 11 16 16 C 1.51270 * 108.53313 * 305.37094 * 15 14 12 17 17 C 1.37880 * 120.84922 * 231.32469 * 16 15 14 18 18 N 1.31520 * 119.99893 * 348.88203 * 17 16 15 19 19 Si 1.86801 * 120.00208 * 168.88079 * 17 16 15 20 20 H 1.48498 * 109.46871 * 354.66143 * 19 17 16 21 21 H 1.48501 * 109.47132 * 114.65840 * 19 17 16 22 22 H 1.48500 * 109.47207 * 234.66077 * 19 17 16 23 23 C 1.51266 * 118.30318 * 51.34631 * 16 15 14 24 24 C 1.52959 * 109.41659 * 204.99978 * 12 11 9 25 25 C 1.53874 * 106.59885 * 336.38430 * 9 8 7 26 26 H 1.09000 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47239 * 299.99873 * 1 2 3 28 28 H 1.08994 * 109.47414 * 60.00147 * 1 2 3 29 29 H 1.09000 * 110.75471 * 321.64363 * 7 5 3 30 30 H 1.08995 * 110.75382 * 84.82416 * 7 5 3 31 31 H 1.08993 * 110.49154 * 279.26294 * 8 7 5 32 32 H 1.09005 * 110.48166 * 156.61807 * 8 7 5 33 33 H 1.00907 * 111.00672 * 36.11588 * 11 9 8 34 34 H 1.08999 * 109.48073 * 63.72275 * 14 12 11 35 35 H 1.09003 * 109.47752 * 303.68779 * 14 12 11 36 36 H 1.08998 * 109.62438 * 185.65785 * 15 14 12 37 37 H 1.09000 * 109.78357 * 65.17643 * 15 14 12 38 38 H 0.96996 * 119.99981 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.63131 * 188.93618 * 23 16 15 40 40 H 1.09005 * 109.78038 * 68.45823 * 23 16 15 41 41 H 1.09004 * 109.48263 * 56.31532 * 24 12 11 42 42 H 1.09003 * 109.48285 * 296.28040 * 24 12 11 43 43 H 1.08996 * 110.03236 * 119.28776 * 25 9 8 44 44 H 1.09006 * 110.03437 * 240.67392 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9748 0.7463 -0.8619 7 6 4.1429 0.6950 1.3149 8 6 5.5276 1.3819 1.4131 9 6 5.2768 2.8144 0.8984 10 1 5.0964 3.4870 1.7368 11 7 6.4330 3.2791 0.1205 12 6 7.4344 3.9092 0.9913 13 1 6.9288 4.4427 1.7961 14 6 8.3407 2.8307 1.5871 15 6 9.3257 3.4774 2.5666 16 6 10.0639 4.5837 1.8460 17 6 11.4411 4.6462 1.8686 18 7 12.1208 3.8779 2.6918 19 14 12.3417 5.8219 0.7301 20 1 11.3662 6.4743 -0.1798 21 1 13.0357 6.8578 1.5367 22 1 13.3390 5.0682 -0.0715 23 6 9.2527 5.6200 1.1003 24 6 8.2704 4.8955 0.1740 25 6 4.0297 2.7464 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.5159 0.9664 2.1642 30 1 4.2495 -0.3875 1.2457 31 1 6.2529 0.8706 0.7802 32 1 5.8705 1.4029 2.4476 33 1 6.8395 2.5232 -0.4100 34 1 8.8938 2.3382 0.7874 35 1 7.7327 2.0959 2.1149 36 1 10.0375 2.7300 2.9170 37 1 8.7827 3.8924 3.4158 38 1 13.0896 3.9216 2.7075 39 1 9.9176 6.2493 0.5086 40 1 8.7003 6.2364 1.8096 41 1 7.6126 5.6243 -0.2997 42 1 8.8252 4.3541 -0.5923 43 1 3.2439 3.3854 0.4023 44 1 4.2822 3.0591 -1.0137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170507577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:16 Heat of formation + Delta-G solvation = -108.512535 kcal Electronic energy + Delta-G solvation = -22574.859996 eV Core-core repulsion = 19297.913241 eV Total energy + Delta-G solvation = -3276.946755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84198 -38.77760 -36.96272 -36.32815 -33.51372 -31.43094 -29.60089 -29.24013 -28.45582 -27.43125 -25.53916 -22.64576 -21.63001 -21.27531 -20.73493 -19.81409 -19.00265 -17.95153 -16.93593 -16.65659 -16.20472 -15.53829 -14.99003 -14.42194 -14.11736 -13.82814 -13.61738 -13.16205 -13.05056 -12.86084 -12.48578 -12.45753 -12.33260 -12.02603 -11.85883 -11.69041 -11.27394 -11.09373 -11.04984 -10.93699 -10.81496 -10.72366 -10.61390 -10.48432 -10.41616 -10.00415 -9.87955 -9.31698 -8.90852 -8.66867 -8.37831 -7.76149 -6.08477 -3.96217 2.01386 2.50338 3.28219 3.38459 3.39574 4.27252 4.41480 4.42761 4.59887 4.68744 4.81690 4.88788 5.07138 5.19982 5.21897 5.30639 5.37719 5.43010 5.50221 5.59188 5.76344 5.84607 5.95688 6.04798 6.10950 6.13555 6.21223 6.32124 6.36139 6.57891 6.72699 6.83347 6.86861 7.05405 7.08627 7.23128 7.49669 7.55176 7.64593 7.69765 7.76253 7.83279 7.94770 8.43353 9.00482 9.58477 11.01264 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.046871 B = 0.003200 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.246577 B = 8746.840485 C = 9113.424409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.506 6.506 5 C -0.089 4.089 6 H 0.112 0.888 7 C -0.108 4.108 8 C -0.150 4.150 9 C 0.087 3.913 10 H 0.081 0.919 11 N -0.685 5.685 12 C 0.099 3.901 13 H 0.064 0.936 14 C -0.137 4.137 15 C 0.014 3.986 16 C -0.485 4.485 17 C 0.074 3.926 18 N -0.890 5.890 19 Si 0.877 3.123 20 H -0.255 1.255 21 H -0.284 1.284 22 H -0.287 1.287 23 C -0.026 4.026 24 C -0.093 4.093 25 C -0.105 4.105 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.336 0.664 34 H 0.048 0.952 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.039 0.961 40 H 0.015 0.985 41 H 0.037 0.963 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.180 -8.325 -5.078 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.393 6.393 5 C -0.108 4.108 6 H 0.129 0.871 7 C -0.146 4.146 8 C -0.190 4.190 9 C -0.024 4.024 10 H 0.099 0.901 11 N -0.313 5.313 12 C -0.010 4.010 13 H 0.082 0.918 14 C -0.176 4.176 15 C -0.024 4.024 16 C -0.504 4.504 17 C -0.128 4.128 18 N -0.527 5.527 19 Si 0.706 3.294 20 H -0.180 1.180 21 H -0.210 1.210 22 H -0.213 1.213 23 C -0.064 4.064 24 C -0.131 4.131 25 C -0.143 4.143 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.155 0.845 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.033 0.967 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.525 -7.458 -5.205 20.637 hybrid contribution 0.736 -0.296 -0.129 0.804 sum -17.789 -7.754 -5.334 20.126 Atomic orbital electron populations 1.23254 0.76639 1.03578 1.02513 1.86531 1.23219 1.33722 1.84130 1.23870 0.92193 0.81118 0.71732 1.90657 1.67125 1.36379 1.45178 1.22001 0.86217 1.00715 1.01846 0.87052 1.22432 0.96923 1.00368 0.94912 1.23253 0.96100 0.96963 1.02643 1.22196 0.91108 0.94135 0.94956 0.90121 1.60861 1.09335 1.34393 1.26753 1.21540 0.90686 0.95172 0.93579 0.91807 1.22376 0.98176 0.96881 1.00203 1.19291 0.93860 0.96238 0.92990 1.20055 0.90368 1.09646 1.30309 1.24856 0.97027 0.95667 0.95245 1.69910 1.07095 1.40099 1.35630 0.86766 0.79444 0.81231 0.82006 1.17972 1.21036 1.21327 1.19964 0.95449 0.95996 0.95027 1.21517 0.96682 0.96912 0.98003 1.22256 0.97405 0.92352 1.02337 0.88182 0.91953 0.91966 0.91140 0.90443 0.90789 0.90695 0.84521 0.93367 0.94948 0.93150 0.98009 0.92789 0.94229 0.96690 0.94466 0.93433 0.89962 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.65 10.57 -39.26 -0.41 -4.07 16 3 C 0.47 5.42 7.26 36.00 0.26 5.68 16 4 O -0.51 -7.22 15.17 -18.75 -0.28 -7.50 16 5 C -0.09 -0.91 3.36 -90.11 -0.30 -1.21 16 6 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 7 C -0.11 -1.06 6.32 -24.74 -0.16 -1.21 16 8 C -0.15 -1.73 4.86 -25.07 -0.12 -1.85 16 9 C 0.09 1.14 3.23 -66.59 -0.21 0.92 16 10 H 0.08 1.15 7.43 -51.93 -0.39 0.76 16 11 N -0.68 -10.39 5.95 -98.62 -0.59 -10.97 16 12 C 0.10 1.83 2.36 -67.75 -0.16 1.67 16 13 H 0.06 1.24 7.43 -51.93 -0.39 0.86 16 14 C -0.14 -2.75 5.04 -26.63 -0.13 -2.89 16 15 C 0.01 0.35 5.93 -27.49 -0.16 0.19 16 16 C -0.48 -12.73 5.48 -98.92 -0.54 -13.27 16 17 C 0.07 2.04 5.44 -17.82 -0.10 1.94 16 18 N -0.89 -25.73 12.82 55.43 0.71 -25.02 16 19 Si 0.88 20.89 27.95 -169.99 -4.75 16.13 16 20 H -0.25 -5.81 5.58 56.52 0.32 -5.49 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C -0.03 -0.62 5.65 -27.49 -0.16 -0.77 16 24 C -0.09 -1.89 5.54 -26.64 -0.15 -2.04 16 25 C -0.11 -1.26 5.98 -25.61 -0.15 -1.41 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.85 7.56 -51.93 -0.39 0.46 16 32 H 0.07 0.92 7.36 -51.93 -0.38 0.54 16 33 H 0.34 4.85 7.86 -39.29 -0.31 4.54 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.03 0.58 5.73 -51.93 -0.30 0.28 16 36 H 0.05 1.37 7.19 -51.93 -0.37 0.99 16 37 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.04 0.93 4.36 -51.93 -0.23 0.70 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.08 6.85 -51.93 -0.36 0.73 16 44 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -29.48 336.72 -8.66 -38.14 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.39 Total: 1.15 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.02 Total: -12.94 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.12 Total: -35.99 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.70 Total: -11.57 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.75 Total: 16.13 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.48 -8.66 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170507577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.372 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds