Wall clock time and date at job start Tue Mar 31 2020 05:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00128 * 2 1 4 4 O 1.20824 * 120.00128 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99775 * 180.02562 * 3 2 1 6 6 H 1.08993 * 110.67457 * 59.30056 * 5 3 2 7 7 C 1.54883 * 110.75638 * 296.06176 * 5 3 2 8 8 C 1.54464 * 104.10349 * 203.89961 * 7 5 3 9 9 C 1.53877 * 106.68474 * 23.33942 * 8 7 5 10 10 H 1.08995 * 110.03146 * 240.87473 * 9 8 7 11 11 N 1.46898 * 110.02707 * 119.44783 * 9 8 7 12 12 C 1.46899 * 111.00309 * 87.83512 * 11 9 8 13 13 H 1.08998 * 109.41272 * 324.85818 * 12 11 9 14 14 C 1.52958 * 109.41293 * 84.64246 * 12 11 9 15 15 C 1.53227 * 109.40618 * 183.70598 * 14 12 11 16 16 C 1.51275 * 108.53539 * 305.37382 * 15 14 12 17 17 C 1.37871 * 120.84974 * 231.36751 * 16 15 14 18 18 N 1.31513 * 120.00133 * 164.54828 * 17 16 15 19 19 Si 1.86807 * 120.00090 * 344.55094 * 17 16 15 20 20 H 1.48497 * 109.46844 * 354.63643 * 19 17 16 21 21 H 1.48499 * 109.47131 * 114.63532 * 19 17 16 22 22 H 1.48499 * 109.46738 * 234.63696 * 19 17 16 23 23 C 1.51274 * 118.29775 * 51.34641 * 16 15 14 24 24 C 1.52957 * 109.41554 * 204.99559 * 12 11 9 25 25 C 1.54268 * 106.59637 * 0.16382 * 9 8 7 26 26 H 1.08997 * 109.47398 * 59.99572 * 1 2 3 27 27 H 1.08994 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46609 * 300.00160 * 1 2 3 29 29 H 1.09000 * 110.49028 * 322.42799 * 7 5 3 30 30 H 1.09006 * 110.48322 * 85.06521 * 7 5 3 31 31 H 1.09003 * 109.85315 * 264.10775 * 8 7 5 32 32 H 1.09002 * 110.12533 * 142.72969 * 8 7 5 33 33 H 1.00908 * 111.00203 * 323.87483 * 11 9 8 34 34 H 1.09004 * 109.48498 * 303.69167 * 14 12 11 35 35 H 1.09003 * 109.48207 * 63.72433 * 14 12 11 36 36 H 1.09004 * 109.62758 * 185.66003 * 15 14 12 37 37 H 1.08996 * 109.78353 * 65.18074 * 15 14 12 38 38 H 0.97004 * 120.00351 * 180.02562 * 18 17 16 39 39 H 1.08997 * 109.61931 * 188.93373 * 23 16 15 40 40 H 1.08997 * 109.62104 * 68.36987 * 23 16 15 41 41 H 1.08997 * 109.48395 * 296.28041 * 24 12 11 42 42 H 1.09006 * 109.48180 * 56.30310 * 24 12 11 43 43 H 1.08999 * 110.48247 * 217.70572 * 25 9 8 44 44 H 1.08999 * 110.48555 * 95.06812 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9776 0.7752 -0.8777 7 6 4.1483 0.6678 1.3001 8 6 5.5290 1.3447 1.4465 9 6 5.4596 2.6647 0.6588 10 1 6.2000 2.6615 -0.1411 11 7 5.6958 3.8010 1.5593 12 6 7.1306 4.0958 1.6698 13 1 7.6961 3.1649 1.6278 14 6 7.5547 4.9993 0.5108 15 6 9.0680 5.2314 0.5735 16 6 9.4155 5.7706 1.9435 17 6 10.1712 6.9154 2.0820 18 7 10.2127 7.5400 3.2386 19 14 11.1360 7.5794 0.6267 20 1 11.0282 6.6325 -0.5121 21 1 10.5840 8.8988 0.2273 22 1 12.5628 7.7346 1.0082 23 6 8.9121 5.0217 3.1577 24 6 7.4045 4.7974 3.0012 25 6 4.0388 2.7485 0.0636 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.5135 0.9113 2.1521 30 1 4.2579 -0.4122 1.2013 31 1 6.3031 0.7009 1.0287 32 1 5.7380 1.5472 2.4969 33 1 5.2901 3.6328 2.4678 34 1 7.2991 4.5215 -0.4350 35 1 7.0369 5.9555 0.5868 36 1 9.3596 5.9537 -0.1890 37 1 9.5928 4.2908 0.4064 38 1 10.7441 8.3457 3.3359 39 1 9.1036 5.6094 4.0555 40 1 9.4198 4.0600 3.2311 41 1 6.8902 5.7582 3.0184 42 1 7.0422 4.1764 3.8206 43 1 4.0689 3.1834 -0.9355 44 1 3.3863 3.3304 0.7145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170507582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:23 Heat of formation + Delta-G solvation = -110.006881 kcal Electronic energy + Delta-G solvation = -22511.250198 eV Core-core repulsion = 19234.238643 eV Total energy + Delta-G solvation = -3277.011555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81879 -38.72262 -36.93440 -36.35714 -33.52106 -31.41556 -29.65918 -29.25082 -28.44751 -27.40904 -25.62810 -22.70344 -21.74197 -21.42504 -20.27981 -19.78052 -19.00987 -17.78456 -16.93706 -16.62812 -16.10034 -15.83806 -14.68915 -14.48011 -14.36212 -13.79353 -13.68929 -13.33045 -13.17945 -12.67255 -12.58336 -12.44540 -12.31152 -11.91682 -11.81624 -11.66406 -11.30416 -11.06586 -11.05419 -10.95385 -10.89174 -10.77920 -10.53717 -10.44328 -10.34190 -10.01207 -9.83608 -9.45813 -8.87346 -8.65083 -8.30428 -7.86493 -6.08993 -3.93160 2.01774 2.49274 3.29114 3.39356 3.42580 4.22607 4.38540 4.43063 4.51388 4.81935 4.84057 4.89593 4.94315 5.19225 5.20835 5.25083 5.32654 5.37848 5.49677 5.56226 5.73944 5.86845 5.88210 5.99386 6.06518 6.14088 6.23984 6.27997 6.33092 6.62533 6.76127 6.86807 6.95674 7.02887 7.11615 7.20509 7.52372 7.55752 7.63207 7.73720 7.80343 7.87634 7.94070 8.44557 9.01609 9.59546 11.01087 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041340 B = 0.003180 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.146658 B = 8802.966809 C = 8995.460043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.503 6.503 5 C -0.091 4.091 6 H 0.113 0.887 7 C -0.106 4.106 8 C -0.153 4.153 9 C 0.085 3.915 10 H 0.083 0.917 11 N -0.684 5.684 12 C 0.101 3.899 13 H 0.032 0.968 14 C -0.090 4.090 15 C -0.016 4.016 16 C -0.490 4.490 17 C 0.078 3.922 18 N -0.885 5.885 19 Si 0.879 3.121 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.287 1.287 23 C 0.011 3.989 24 C -0.107 4.107 25 C -0.095 4.095 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.335 0.665 34 H 0.027 0.973 35 H 0.056 0.944 36 H 0.031 0.969 37 H 0.010 0.990 38 H 0.263 0.737 39 H 0.055 0.945 40 H 0.000 1.000 41 H 0.058 0.942 42 H 0.024 0.976 43 H 0.074 0.926 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.540 -15.535 -5.445 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.390 6.390 5 C -0.110 4.110 6 H 0.131 0.869 7 C -0.143 4.143 8 C -0.193 4.193 9 C -0.026 4.026 10 H 0.101 0.899 11 N -0.314 5.314 12 C -0.007 4.007 13 H 0.050 0.950 14 C -0.129 4.129 15 C -0.054 4.054 16 C -0.509 4.509 17 C -0.125 4.125 18 N -0.522 5.522 19 Si 0.707 3.293 20 H -0.186 1.186 21 H -0.210 1.210 22 H -0.213 1.213 23 C -0.026 4.026 24 C -0.145 4.145 25 C -0.133 4.133 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.018 0.982 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.800 -14.583 -5.818 21.576 hybrid contribution 0.551 -0.288 -0.188 0.650 sum -14.249 -14.871 -6.006 21.453 Atomic orbital electron populations 1.23252 0.76616 1.03550 1.02558 1.86525 1.23236 1.33774 1.84199 1.23801 0.92013 0.81165 0.71964 1.90680 1.67110 1.36346 1.44822 1.22131 0.86370 1.00754 1.01793 0.86913 1.22298 0.96709 1.00110 0.95231 1.23007 0.96504 0.98342 1.01402 1.22194 0.96416 0.88130 0.95843 0.89866 1.60654 1.16195 1.39075 1.15451 1.21442 0.84763 0.96951 0.97562 0.95041 1.21525 0.98393 0.98510 0.94423 1.19779 0.91943 0.96742 0.96970 1.19999 1.31839 1.08740 0.90282 1.24819 0.96298 0.95580 0.95787 1.69918 1.39588 1.17858 1.24828 0.86776 0.79939 0.78889 0.83730 1.18633 1.20961 1.21296 1.19363 0.89435 0.95450 0.98392 1.21779 1.01104 0.98842 0.92802 1.22340 0.96406 0.92024 1.02516 0.91965 0.88200 0.91919 0.91248 0.90543 0.91266 0.91063 0.84635 0.95386 0.92496 0.95043 0.97202 0.92740 0.92592 0.98210 0.92316 0.95737 0.90770 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.63 10.57 -39.26 -0.41 -4.04 16 3 C 0.47 5.43 7.26 36.01 0.26 5.69 16 4 O -0.50 -7.32 15.50 -18.75 -0.29 -7.61 16 5 C -0.09 -0.92 3.39 -89.78 -0.30 -1.22 16 6 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.11 -0.99 6.28 -24.97 -0.16 -1.15 16 8 C -0.15 -1.67 6.34 -25.51 -0.16 -1.83 16 9 C 0.09 1.11 2.99 -66.59 -0.20 0.91 16 10 H 0.08 1.15 7.13 -51.93 -0.37 0.78 16 11 N -0.68 -10.84 6.02 -98.62 -0.59 -11.44 16 12 C 0.10 1.92 2.23 -67.76 -0.15 1.77 16 13 H 0.03 0.61 7.77 -51.93 -0.40 0.20 16 14 C -0.09 -1.88 5.43 -26.64 -0.14 -2.02 16 15 C -0.02 -0.38 5.47 -27.48 -0.15 -0.53 16 16 C -0.49 -12.97 5.44 -98.92 -0.54 -13.51 16 17 C 0.08 2.15 5.43 -17.82 -0.10 2.05 16 18 N -0.88 -25.62 12.81 55.43 0.71 -24.91 16 19 Si 0.88 21.12 27.63 -169.99 -4.70 16.42 16 20 H -0.26 -6.07 6.14 56.52 0.35 -5.72 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.01 0.29 5.99 -27.49 -0.16 0.12 16 24 C -0.11 -2.27 5.24 -26.64 -0.14 -2.41 16 25 C -0.09 -1.16 5.59 -25.07 -0.14 -1.30 16 26 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 29 H 0.07 0.67 8.04 -51.93 -0.42 0.26 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 33 H 0.33 5.01 7.72 -39.29 -0.30 4.71 16 34 H 0.03 0.53 7.40 -51.93 -0.38 0.14 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.03 0.74 5.02 -51.93 -0.26 0.48 16 37 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.06 1.53 7.11 -51.93 -0.37 1.16 16 40 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.09 1.23 7.39 -51.93 -0.38 0.85 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -29.83 341.56 -8.70 -38.54 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.54 Total: 0.01 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -1.02 Total: -12.11 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.12 Total: -36.34 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.71 Total: -11.65 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.70 Total: 16.42 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.83 -8.70 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170507582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.472 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds