Wall clock time and date at job start Tue Mar 31 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99540 * 2 1 3 5 5 N 1.31128 * 126.54752 * 120.00215 * 4 2 1 6 6 C 1.34497 * 105.61254 * 180.02562 * 5 4 2 7 7 C 1.50703 * 126.28743 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47188 * 89.99558 * 7 6 5 9 9 N 1.46897 * 109.46983 * 180.02562 * 8 7 6 10 10 C 1.46905 * 111.00374 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.46750 * 34.99651 * 10 9 8 12 12 C 1.52997 * 109.46927 * 275.00279 * 10 9 8 13 13 C 1.52989 * 109.47346 * 154.99574 * 10 9 8 14 14 C 1.53001 * 109.47546 * 295.00251 * 13 10 9 15 15 C 1.50697 * 109.47150 * 180.02562 * 14 13 10 16 16 H 1.08004 * 120.00151 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00139 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99884 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00356 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47195 * 59.99592 * 19 17 15 21 21 H 1.48498 * 109.47321 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46951 * 299.99826 * 19 17 15 23 23 N 1.29943 * 107.42479 * 359.97438 * 6 5 4 24 24 O 1.21302 * 110.25145 * 359.71164 * 23 6 5 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08996 * 109.46795 * 209.99558 * 7 6 5 33 33 H 1.09000 * 109.47087 * 329.99174 * 7 6 5 34 34 H 1.08996 * 109.47253 * 299.99719 * 8 7 6 35 35 H 1.09000 * 109.47420 * 59.99820 * 8 7 6 36 36 H 1.00897 * 111.00023 * 56.04662 * 9 8 7 37 37 H 1.09003 * 109.47396 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.47093 * 299.99235 * 12 10 9 39 39 H 1.09002 * 109.47404 * 59.99470 * 12 10 9 40 40 H 1.08999 * 109.46953 * 55.00732 * 13 10 9 41 41 H 1.09000 * 109.46973 * 174.99961 * 13 10 9 42 42 H 1.08996 * 109.46967 * 299.99924 * 14 13 10 43 43 H 1.08993 * 109.46877 * 60.00014 * 14 13 10 44 44 H 0.96992 * 120.00401 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 2.7893 -1.7807 1.2600 6 6 2.9810 -2.0527 2.5632 7 6 3.7873 -3.1943 3.1268 8 6 5.2383 -2.7484 3.3179 9 7 6.0244 -3.8614 3.8667 10 6 7.4264 -3.4692 4.0633 11 1 7.4720 -2.4227 4.3651 12 6 8.1967 -3.6566 2.7548 13 6 8.0521 -4.3418 5.1531 14 6 7.3621 -4.0618 6.4897 15 6 7.9789 -4.9210 7.5631 16 1 8.7829 -5.5987 7.3168 17 6 7.5168 -4.8419 8.8597 18 7 6.5381 -4.0162 9.1598 19 14 8.2818 -5.9064 10.1906 20 1 9.7286 -5.5917 10.3054 21 1 7.6121 -5.6346 11.4878 22 1 8.1134 -7.3386 9.8365 23 7 2.3432 -1.1504 3.2470 24 8 1.7965 -0.3663 2.5002 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 3.3698 -3.4943 4.0879 33 1 3.7542 -4.0378 2.4372 34 1 5.6558 -2.4484 2.3567 35 1 5.2714 -1.9049 4.0075 36 1 5.9569 -4.6772 3.2768 37 1 9.2369 -3.3651 2.9005 38 1 8.1512 -4.7030 2.4530 39 1 7.7509 -3.0348 1.9784 40 1 7.9273 -5.3930 4.8930 41 1 9.1142 -4.1121 5.2373 42 1 7.4869 -3.0107 6.7497 43 1 6.3000 -4.2916 6.4054 44 1 6.2132 -3.9603 10.0720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:03 Heat of formation + Delta-G solvation = 36.357880 kcal Electronic energy + Delta-G solvation = -21529.577365 eV Core-core repulsion = 18291.205414 eV Total energy + Delta-G solvation = -3238.371952 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.70075 -37.57739 -36.65591 -36.00191 -33.61783 -32.54371 -31.35854 -29.53763 -28.11895 -27.73879 -25.08226 -24.53002 -23.95850 -22.35344 -21.27868 -20.43898 -19.65740 -18.17645 -17.41494 -16.28436 -16.07511 -15.56129 -14.99746 -14.84135 -14.42052 -14.11548 -13.82396 -13.76643 -13.01603 -12.76110 -12.73021 -12.62501 -12.42833 -12.27181 -12.19531 -11.91106 -11.90241 -11.55281 -11.46858 -11.31590 -11.19074 -11.08339 -10.95528 -10.78468 -10.44169 -10.22087 -9.91540 -9.60058 -9.18010 -8.88053 -8.20223 -7.91057 -5.84741 -3.86173 1.04438 2.11802 2.63067 3.40845 3.41592 3.44987 3.47457 3.89711 4.35934 4.44941 4.52803 4.56901 4.64252 4.96884 5.09309 5.11081 5.24453 5.25387 5.26662 5.35558 5.40610 5.50287 5.51250 5.57989 5.63307 5.67419 5.68967 5.71782 5.91176 5.99357 6.06239 6.16200 6.28731 6.42547 6.68828 6.91029 7.32271 7.46911 7.78920 7.88127 8.10518 8.11440 8.27003 8.61000 9.22806 9.76181 11.26289 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.002777 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.818227 B =10079.034599 C =10800.121713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.001 3.999 3 C -0.152 4.152 4 C 0.175 3.825 5 N -0.480 5.480 6 C 0.179 3.821 7 C -0.030 4.030 8 C 0.070 3.930 9 N -0.669 5.669 10 C 0.085 3.915 11 H 0.071 0.929 12 C -0.180 4.180 13 C -0.098 4.098 14 C 0.029 3.971 15 C -0.519 4.519 16 H 0.050 0.950 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.278 1.278 23 N -0.376 5.376 24 O 0.080 5.920 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.336 0.664 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.006 0.994 43 H 0.032 0.968 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.865 9.175 -22.384 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 C -0.210 4.210 4 C -0.046 4.046 5 N -0.214 5.214 6 C -0.094 4.094 7 C -0.069 4.069 8 C -0.060 4.060 9 N -0.299 5.299 10 C -0.025 4.025 11 H 0.089 0.911 12 C -0.239 4.239 13 C -0.136 4.136 14 C -0.008 4.008 15 C -0.557 4.557 16 H 0.068 0.932 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 N -0.082 5.082 24 O 0.020 5.980 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.154 0.846 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.025 0.975 43 H 0.051 0.949 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.921 9.032 -20.842 25.203 hybrid contribution 0.683 -0.480 -0.182 0.854 sum -10.238 8.552 -21.023 24.899 Atomic orbital electron populations 1.21918 0.92188 1.03185 1.03645 1.19828 0.96991 0.95856 0.89220 1.21923 1.02017 0.93405 1.03652 1.28834 0.94413 0.92328 0.89002 1.71902 1.16594 1.13548 1.19332 1.25868 0.99241 0.98881 0.85435 1.19994 0.93458 0.91327 1.02146 1.21811 0.90919 0.95377 0.97943 1.60478 1.10873 1.05819 1.52768 1.21736 0.85957 1.00394 0.94367 0.91055 1.22536 1.01402 1.01316 0.98694 1.21632 0.98100 0.97629 0.96261 1.18995 0.96868 0.95965 0.88966 1.21312 1.18218 1.22689 0.93514 0.93151 1.25008 0.95196 0.95655 0.98622 1.69971 1.27112 1.37175 1.19196 0.86737 0.79343 0.81047 0.81286 1.20440 1.21418 1.20365 1.74737 1.12593 1.03881 1.17038 1.85288 1.54611 1.42713 1.15354 0.91822 0.90438 0.91363 0.86754 0.91342 0.91786 0.90429 0.87669 0.88885 0.95433 0.90731 0.84593 0.92185 0.92663 0.93772 0.93381 0.93456 0.97538 0.94912 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.18 37.16 0.34 -0.37 16 2 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 3 C -0.15 -0.75 9.18 37.16 0.34 -0.41 16 4 C 0.18 1.88 7.02 -13.06 -0.09 1.79 16 5 N -0.48 -6.30 11.55 -9.87 -0.11 -6.42 16 6 C 0.18 2.58 7.47 -156.37 -1.17 1.41 16 7 C -0.03 -0.41 6.10 -27.88 -0.17 -0.58 16 8 C 0.07 1.05 5.47 -3.83 -0.02 1.03 16 9 N -0.67 -11.02 5.70 -106.73 -0.61 -11.63 16 10 C 0.08 1.47 2.59 -67.72 -0.18 1.29 16 11 H 0.07 1.31 7.80 -51.92 -0.41 0.90 16 12 C -0.18 -2.51 9.16 37.16 0.34 -2.17 16 13 C -0.10 -2.07 4.83 -26.74 -0.13 -2.20 16 14 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 15 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -28.03 13.29 55.43 0.74 -27.29 16 19 Si 0.89 22.43 29.54 -169.99 -5.02 17.40 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 N -0.38 -5.72 12.16 30.90 0.38 -5.35 16 24 O 0.08 1.01 11.31 18.11 0.20 1.21 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.39 7.43 -51.93 -0.39 0.00 16 35 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 36 H 0.34 4.88 8.47 -39.29 -0.33 4.55 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 39 H 0.04 0.56 7.45 -51.93 -0.39 0.18 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -33.70 365.66 -8.30 -42.00 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.79 Total: -1.54 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.59 Total: -13.90 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.39 Total: -50.69 kcal Atomic # 8 Polarization: 1.01 SS G_CDS: 0.20 Total: 1.21 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.70 -8.30 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.357 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds