Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.31126 * 126.55441 * 119.99917 * 4 2 1 6 6 C 1.34489 * 105.61439 * 180.02562 * 5 4 2 7 7 C 1.50705 * 126.28763 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47255 * 89.99433 * 7 6 5 9 9 N 1.46903 * 109.47102 * 180.02562 * 8 7 6 10 10 C 1.46896 * 110.99963 * 180.02562 * 9 8 7 11 11 H 1.09005 * 109.47325 * 324.99566 * 10 9 8 12 12 C 1.52997 * 109.47312 * 85.00312 * 10 9 8 13 13 C 1.53006 * 109.47022 * 205.00189 * 10 9 8 14 14 C 1.52995 * 109.47253 * 65.00101 * 13 10 9 15 15 C 1.50698 * 109.47049 * 180.02562 * 14 13 10 16 16 H 1.07997 * 120.00456 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00055 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99575 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00014 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47263 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47488 * 119.99813 * 19 17 15 22 22 H 1.48504 * 109.46931 * 239.99572 * 19 17 15 23 23 N 1.29944 * 107.42724 * 359.97438 * 6 5 4 24 24 O 1.21296 * 110.24905 * 359.71129 * 23 6 5 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.09003 * 109.47117 * 210.00123 * 7 6 5 33 33 H 1.09000 * 109.46736 * 329.99719 * 7 6 5 34 34 H 1.08998 * 109.47182 * 300.00226 * 8 7 6 35 35 H 1.09000 * 109.47014 * 60.00457 * 8 7 6 36 36 H 1.00899 * 111.00314 * 303.95632 * 9 8 7 37 37 H 1.08998 * 109.47427 * 60.00058 * 12 10 9 38 38 H 1.09006 * 109.47385 * 180.02562 * 12 10 9 39 39 H 1.08998 * 109.46991 * 299.99583 * 12 10 9 40 40 H 1.09004 * 109.46987 * 184.99890 * 13 10 9 41 41 H 1.09000 * 109.47019 * 304.99463 * 13 10 9 42 42 H 1.09004 * 109.46952 * 299.99811 * 14 13 10 43 43 H 1.09000 * 109.47629 * 59.99736 * 14 13 10 44 44 H 0.97000 * 119.99110 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 2.7892 -1.7809 1.2599 6 6 2.9809 -2.0530 2.5630 7 6 3.7872 -3.1946 3.1265 8 6 5.2382 -2.7488 3.3176 9 7 6.0243 -3.8618 3.8664 10 6 7.4259 -3.4692 4.0642 11 1 7.7260 -2.7821 3.2729 12 6 7.5759 -2.7803 5.4220 13 6 8.3149 -4.7139 4.0229 14 6 8.2614 -5.3327 2.6247 15 6 9.1364 -6.5589 2.5842 16 1 9.6770 -6.8659 3.4672 17 6 9.2477 -7.2883 1.4194 18 7 8.5897 -6.9141 0.3439 19 14 10.3318 -8.8087 1.3695 20 1 10.9582 -9.0139 2.7001 21 1 9.5070 -9.9937 1.0221 22 1 11.3926 -8.6268 0.3462 23 7 2.3431 -1.1507 3.2468 24 8 1.7965 -0.3665 2.5002 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.3696 -3.4947 4.0877 33 1 3.7541 -4.0380 2.4368 34 1 5.6557 -2.4487 2.3565 35 1 5.2713 -1.9054 4.0074 36 1 5.6194 -4.2012 4.7261 37 1 7.2760 -3.4674 6.2132 38 1 8.6159 -2.4886 5.5686 39 1 6.9427 -1.8936 5.4514 40 1 9.3421 -4.4346 4.2575 41 1 7.9592 -5.4388 4.7550 42 1 7.2341 -5.6119 2.3900 43 1 8.6170 -4.6077 1.8925 44 1 8.6678 -7.4275 -0.4754 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = 36.434237 kcal Electronic energy + Delta-G solvation = -21561.423205 eV Core-core repulsion = 18323.054564 eV Total energy + Delta-G solvation = -3238.368640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.69428 -37.57830 -36.62086 -35.99227 -33.61912 -32.54191 -31.35328 -29.53985 -28.11931 -27.69845 -25.08317 -24.51097 -23.94825 -22.33172 -21.27923 -20.44682 -19.62924 -18.17919 -17.42072 -16.24297 -16.07859 -15.53585 -15.10719 -14.70021 -14.43320 -14.13132 -13.78911 -13.74441 -13.04373 -12.77165 -12.70828 -12.61495 -12.38369 -12.26769 -12.21652 -11.89697 -11.85979 -11.49807 -11.45124 -11.25787 -11.19330 -11.08870 -10.95008 -10.82012 -10.39823 -10.22226 -9.91499 -9.60534 -9.18409 -8.85755 -8.20597 -7.91568 -5.84993 -3.86086 1.03158 2.14252 2.63651 3.38475 3.44480 3.45625 3.49793 3.88970 4.40124 4.49642 4.52817 4.56946 4.67322 5.01102 5.12861 5.14009 5.18153 5.29591 5.30629 5.36629 5.43606 5.49793 5.50306 5.57367 5.67952 5.69557 5.71687 5.74558 5.87364 6.04689 6.06338 6.17551 6.28360 6.42346 6.68772 6.91049 7.32322 7.46757 7.78258 7.88840 8.09181 8.11604 8.27094 8.61217 9.23214 9.76315 11.26039 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.002971 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.958287 B = 9423.338465 C =10372.506557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.000 4.000 3 C -0.151 4.151 4 C 0.179 3.821 5 N -0.472 5.472 6 C 0.183 3.817 7 C -0.031 4.031 8 C 0.070 3.930 9 N -0.668 5.668 10 C 0.085 3.915 11 H 0.072 0.928 12 C -0.181 4.181 13 C -0.098 4.098 14 C 0.029 3.971 15 C -0.517 4.517 16 H 0.051 0.949 17 C 0.055 3.945 18 N -0.894 5.894 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.286 1.286 23 N -0.388 5.388 24 O 0.075 5.925 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.336 0.664 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.033 0.967 43 H 0.007 0.993 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.530 17.206 2.037 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 C -0.209 4.209 4 C -0.042 4.042 5 N -0.205 5.205 6 C -0.090 4.090 7 C -0.070 4.070 8 C -0.060 4.060 9 N -0.299 5.299 10 C -0.025 4.025 11 H 0.090 0.910 12 C -0.240 4.240 13 C -0.136 4.136 14 C -0.008 4.008 15 C -0.556 4.556 16 H 0.069 0.931 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.212 1.212 23 N -0.096 5.096 24 O 0.017 5.983 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.153 0.847 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.025 0.975 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.207 16.532 1.958 23.234 hybrid contribution 0.489 -0.221 0.590 0.798 sum -15.718 16.311 2.548 22.795 Atomic orbital electron populations 1.21913 0.92209 1.03203 1.03541 1.19856 0.96956 0.95885 0.89360 1.21916 1.02116 0.93374 1.03534 1.28884 0.94248 0.92285 0.88797 1.71986 1.16073 1.13240 1.19216 1.25881 0.98887 0.98597 0.85673 1.20003 0.92837 0.92288 1.01846 1.21817 0.91269 0.92549 1.00402 1.60480 1.02110 1.33359 1.33915 1.21739 0.88126 0.97824 0.94761 0.91006 1.22540 1.01930 1.00181 0.99332 1.21635 0.95943 0.94238 1.01800 1.19005 0.97890 0.94396 0.89552 1.21385 1.27224 1.10539 0.96427 0.93070 1.25011 0.95998 0.97607 0.95912 1.69999 1.42415 1.39569 1.01382 0.86628 0.80536 0.83509 0.77836 1.19909 1.21136 1.21203 1.74648 1.13325 1.04222 1.17419 1.85245 1.54815 1.42748 1.15539 0.90404 0.91514 0.91778 0.86470 0.91698 0.90385 0.91519 0.89330 0.87200 0.90404 0.95762 0.84662 0.92675 0.92158 0.93829 0.93462 0.93397 0.94872 0.97501 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.18 37.16 0.34 -0.43 16 2 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16 3 C -0.15 -0.82 9.17 37.15 0.34 -0.48 16 4 C 0.18 2.00 7.02 -13.06 -0.09 1.91 16 5 N -0.47 -6.75 11.55 -9.87 -0.11 -6.86 16 6 C 0.18 2.64 7.47 -156.38 -1.17 1.47 16 7 C -0.03 -0.42 6.10 -27.88 -0.17 -0.59 16 8 C 0.07 1.05 5.47 -3.82 -0.02 1.03 16 9 N -0.67 -11.00 5.70 -106.73 -0.61 -11.61 16 10 C 0.08 1.47 2.59 -67.71 -0.18 1.29 16 11 H 0.07 1.31 7.80 -51.93 -0.41 0.91 16 12 C -0.18 -2.54 9.16 37.16 0.34 -2.20 16 13 C -0.10 -2.07 4.83 -26.73 -0.13 -2.20 16 14 C 0.03 0.77 4.86 -27.89 -0.14 0.63 16 15 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -27.79 13.29 55.43 0.74 -27.05 16 19 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 N -0.39 -5.49 12.16 30.89 0.38 -5.11 16 24 O 0.07 0.91 11.31 18.10 0.20 1.12 16 25 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 35 H 0.02 0.35 7.44 -51.93 -0.39 -0.04 16 36 H 0.34 4.89 8.47 -39.29 -0.33 4.56 16 37 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.04 0.56 7.45 -51.93 -0.39 0.18 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 43 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -33.47 365.66 -8.30 -41.77 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.79 Total: -1.24 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -1.59 Total: -13.81 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.39 Total: -50.64 kcal Atomic # 8 Polarization: 0.91 SS G_CDS: 0.20 Total: 1.12 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.47 -8.30 -41.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.205 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds