Wall clock time and date at job start Tue Mar 31 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00621 * 2 1 4 4 C 1.52997 * 109.47822 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47684 * 180.25558 * 4 3 2 6 6 C 1.35050 * 126.39792 * 94.41870 * 5 4 3 7 7 N 1.30492 * 108.69891 * 180.02562 * 6 5 4 8 8 C 1.34129 * 109.26023 * 0.02562 * 7 6 5 9 9 C 1.34670 * 108.01834 * 359.73169 * 8 7 6 10 10 C 1.50700 * 126.59145 * 180.27873 * 9 8 7 11 11 N 1.46899 * 109.46915 * 94.97630 * 10 9 8 12 12 C 1.46902 * 111.00030 * 185.09265 * 11 10 9 13 13 H 1.09004 * 109.46981 * 34.99845 * 12 11 10 14 14 C 1.53003 * 109.47449 * 275.00145 * 12 11 10 15 15 C 1.53001 * 109.47368 * 154.99510 * 12 11 10 16 16 C 1.52996 * 109.47435 * 295.00326 * 15 12 11 17 17 C 1.50695 * 109.47069 * 179.97438 * 16 15 12 18 18 H 1.07996 * 120.00379 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99672 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00214 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99689 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47061 * 90.00313 * 21 19 17 23 23 H 1.48506 * 109.47122 * 209.99919 * 21 19 17 24 24 H 1.48494 * 109.47334 * 330.00234 * 21 19 17 25 25 H 1.08991 * 109.47419 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46581 * 299.99986 * 1 2 3 27 27 H 1.08999 * 109.46916 * 59.99332 * 1 2 3 28 28 H 1.09000 * 109.46941 * 300.00133 * 3 2 1 29 29 H 1.09003 * 109.47508 * 59.99781 * 3 2 1 30 30 H 1.09007 * 109.46864 * 300.26137 * 4 3 2 31 31 H 1.09004 * 109.47067 * 60.25213 * 4 3 2 32 32 H 1.07993 * 125.64589 * 0.04134 * 6 5 4 33 33 H 1.08003 * 125.99481 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.46929 * 214.97420 * 10 9 8 35 35 H 1.08998 * 109.47557 * 334.97483 * 10 9 8 36 36 H 1.00900 * 111.00186 * 61.13891 * 11 10 9 37 37 H 1.08989 * 109.47211 * 180.02562 * 14 12 11 38 38 H 1.09004 * 109.46784 * 299.99821 * 14 12 11 39 39 H 1.09000 * 109.47076 * 59.99418 * 14 12 11 40 40 H 1.09000 * 109.46540 * 55.00502 * 15 12 11 41 41 H 1.08995 * 109.47116 * 174.99804 * 15 12 11 42 42 H 1.08994 * 109.46894 * 300.00074 * 16 15 12 43 43 H 1.09004 * 109.47133 * 59.99740 * 16 15 12 44 44 H 0.96996 * 120.00260 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1315 2.5228 0.0068 6 6 4.5332 3.2161 1.0939 7 7 5.0108 4.3661 0.7037 8 6 4.9314 4.4476 -0.6328 9 6 4.3893 3.3022 -1.0885 10 6 4.1162 2.9478 -2.5276 11 7 5.2424 2.1711 -3.0628 12 6 5.0673 1.9104 -4.4978 13 1 4.5795 2.7657 -4.9656 14 6 4.2020 0.6630 -4.6878 15 6 6.4350 1.6861 -5.1460 16 6 7.2550 2.9752 -5.0659 17 6 8.6023 2.7540 -5.7038 18 1 8.8488 1.7905 -6.1247 19 6 9.5198 3.7821 -5.7510 20 7 9.2194 4.9556 -5.2390 21 14 11.1895 3.5081 -6.5424 22 1 11.1132 3.8418 -7.9874 23 1 12.1974 4.3791 -5.8858 24 1 11.5854 2.0858 -6.3831 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.6887 1.8463 -0.8900 29 1 1.6888 1.8464 0.8900 30 1 3.8564 0.6397 0.8886 31 1 3.8578 0.6474 -0.8914 32 1 4.4698 2.8752 2.1166 33 1 5.2511 5.2832 -1.2379 34 1 3.2039 2.3544 -2.5888 35 1 3.9953 3.8611 -3.1101 36 1 5.3634 1.3100 -2.5510 37 1 4.0726 0.4694 -5.7526 38 1 4.6899 -0.1922 -4.2201 39 1 3.2277 0.8229 -4.2261 40 1 6.9597 0.8884 -4.6203 41 1 6.3003 1.4054 -6.1906 42 1 6.7302 3.7729 -5.5916 43 1 7.3897 3.2559 -4.0213 44 1 9.8650 5.6788 -5.2719 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:54 Heat of formation + Delta-G solvation = 5.046876 kcal Electronic energy + Delta-G solvation = -22173.168205 eV Core-core repulsion = 18933.438506 eV Total energy + Delta-G solvation = -3239.729699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06883 -38.43071 -37.27323 -34.54818 -33.38613 -32.03711 -29.82062 -29.49082 -28.37796 -26.67923 -25.24978 -24.40624 -23.57204 -21.44805 -21.26121 -20.13716 -19.52401 -17.48797 -16.60499 -16.47019 -16.06498 -15.88462 -15.35204 -14.94348 -14.66354 -14.40599 -14.29460 -13.80337 -13.51403 -13.09926 -12.84604 -12.65825 -12.50243 -12.33184 -12.21815 -12.04603 -11.81177 -11.69555 -11.35082 -11.14999 -10.81208 -10.42144 -10.26657 -10.23009 -9.85016 -9.63428 -9.58884 -9.19052 -8.87266 -8.30555 -8.18716 -7.91698 -5.84190 -3.85374 2.01040 2.45011 3.31080 3.39943 3.46210 3.49465 3.51719 4.25869 4.43757 4.54235 4.57599 4.75083 4.77541 4.83573 4.85021 4.89489 5.00078 5.13624 5.20477 5.23848 5.30353 5.44798 5.51144 5.57699 5.61323 5.78569 5.94312 6.04017 6.21787 6.36035 6.42883 6.53864 6.65085 6.87330 6.88708 7.21039 7.30436 7.43459 7.69613 7.88262 8.11488 8.17688 8.27794 8.61415 9.23552 9.77026 11.26804 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.003669 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.504708 B = 7629.773884 C = 8652.094831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.048 3.952 4 C 0.109 3.891 5 N -0.457 5.457 6 C 0.177 3.823 7 N -0.492 5.492 8 C -0.001 4.001 9 C -0.014 4.014 10 C 0.137 3.863 11 N -0.663 5.663 12 C 0.084 3.916 13 H 0.074 0.926 14 C -0.181 4.181 15 C -0.098 4.098 16 C 0.030 3.970 17 C -0.519 4.519 18 H 0.050 0.950 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.886 3.114 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.090 0.910 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.201 0.799 33 H 0.173 0.827 34 H 0.026 0.974 35 H 0.096 0.904 36 H 0.332 0.668 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.007 0.993 43 H 0.034 0.966 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.293 -9.035 11.412 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.029 4.029 4 C -0.014 4.014 5 N -0.143 5.143 6 C -0.105 4.105 7 N -0.209 5.209 8 C -0.149 4.149 9 C -0.127 4.127 10 C 0.007 3.993 11 N -0.294 5.294 12 C -0.025 4.025 13 H 0.093 0.907 14 C -0.240 4.240 15 C -0.136 4.136 16 C -0.008 4.008 17 C -0.558 4.558 18 H 0.068 0.932 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.218 0.782 33 H 0.190 0.810 34 H 0.044 0.956 35 H 0.115 0.885 36 H 0.150 0.850 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.025 0.975 43 H 0.052 0.948 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.457 -7.992 11.844 23.341 hybrid contribution -0.254 -1.232 -0.880 1.535 sum -18.711 -9.224 10.964 23.567 Atomic orbital electron populations 1.22784 0.80082 1.03139 1.00305 1.87809 1.20445 1.26850 1.95542 1.22795 0.93192 0.85424 1.01531 1.21485 0.91915 0.82145 1.05897 1.45216 1.47089 1.14622 1.07412 1.24893 1.02538 0.89834 0.93186 1.70307 1.19842 1.18181 1.12592 1.22162 1.03496 0.98546 0.90650 1.21214 1.08400 0.93708 0.89339 1.20306 0.91778 0.99393 0.87864 1.60526 1.41245 1.24285 1.03297 1.21787 0.97516 0.95723 0.87505 0.90727 1.22550 0.99407 0.99728 1.02295 1.21627 0.92939 1.01544 0.97453 1.18993 0.92950 0.90686 0.98124 1.21332 1.00026 0.97077 1.37333 0.93195 1.24994 0.98254 0.95377 0.95787 1.69970 1.35233 1.02271 1.45779 0.86695 0.84538 0.77959 0.79363 1.20880 1.21325 1.20061 0.89158 0.93828 0.93773 0.92481 0.92436 0.87871 0.88583 0.78191 0.81001 0.95563 0.88539 0.85040 0.92052 0.92811 0.93889 0.93548 0.93452 0.97475 0.94809 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.34 10.70 -35.23 -0.38 -3.72 16 3 C 0.05 0.39 6.26 37.16 0.23 0.62 16 4 C 0.11 0.94 6.26 -4.05 -0.03 0.91 16 5 N -0.46 -5.25 2.75 -114.00 -0.31 -5.57 16 6 C 0.18 2.16 12.56 -90.38 -1.13 1.03 16 7 N -0.49 -7.80 11.25 -14.67 -0.16 -7.97 16 8 C 0.00 -0.01 11.79 -17.81 -0.21 -0.22 16 9 C -0.01 -0.19 6.51 -81.60 -0.53 -0.72 16 10 C 0.14 1.83 5.65 -4.98 -0.03 1.80 16 11 N -0.66 -10.41 5.66 -107.99 -0.61 -11.02 16 12 C 0.08 1.35 2.59 -67.71 -0.18 1.18 16 13 H 0.07 1.23 7.72 -51.93 -0.40 0.83 16 14 C -0.18 -2.31 9.16 37.16 0.34 -1.97 16 15 C -0.10 -2.00 4.83 -26.73 -0.13 -2.13 16 16 C 0.03 0.78 4.86 -27.89 -0.14 0.64 16 17 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 21 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.22 8.14 -51.92 -0.42 -0.21 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.49 7.89 -51.93 -0.41 0.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.71 8.13 -51.92 -0.42 0.29 16 31 H 0.10 0.87 7.76 -51.93 -0.40 0.46 16 32 H 0.20 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.17 2.74 8.06 -52.48 -0.42 2.32 16 34 H 0.03 0.30 7.24 -51.93 -0.38 -0.07 16 35 H 0.10 1.33 7.93 -51.93 -0.41 0.92 16 36 H 0.33 4.85 8.28 -39.29 -0.33 4.53 16 37 H 0.06 0.76 8.14 -51.94 -0.42 0.34 16 38 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 39 H 0.04 0.48 7.55 -51.93 -0.39 0.09 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -34.09 366.24 -9.06 -43.15 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.73 Total: 0.69 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -1.09 Total: -11.44 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.35 Total: -51.54 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.38 Total: -3.72 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.09 -9.06 -43.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.195 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds