Wall clock time and date at job start Tue Mar 31 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00215 * 2 1 4 4 C 1.52994 * 109.47291 * 184.74389 * 3 2 1 5 5 N 1.46506 * 109.47254 * 183.22349 * 4 3 2 6 6 C 1.35043 * 126.39660 * 266.34592 * 5 4 3 7 7 N 1.30503 * 108.69925 * 179.97438 * 6 5 4 8 8 C 1.34132 * 109.25320 * 359.97438 * 7 6 5 9 9 C 1.34672 * 108.02045 * 359.73270 * 8 7 6 10 10 C 1.50703 * 126.58851 * 180.28251 * 9 8 7 11 11 N 1.46899 * 109.46819 * 94.76972 * 10 9 8 12 12 C 1.46900 * 110.99842 * 275.42997 * 11 10 9 13 13 H 1.09006 * 109.47255 * 346.63627 * 12 11 10 14 14 C 1.53005 * 109.47169 * 106.63537 * 12 11 10 15 15 C 1.53003 * 109.47150 * 226.63617 * 12 11 10 16 16 C 1.52996 * 109.47305 * 65.16182 * 15 12 11 17 17 C 1.50704 * 109.47183 * 184.19105 * 16 15 12 18 18 H 1.07998 * 119.99790 * 5.08439 * 17 16 15 19 19 C 1.37870 * 119.99897 * 185.08989 * 17 16 15 20 20 N 1.31515 * 119.99974 * 174.56870 * 19 17 16 21 21 Si 1.86799 * 120.00123 * 354.57249 * 19 17 16 22 22 H 1.48498 * 109.47143 * 94.10058 * 21 19 17 23 23 H 1.48504 * 109.46976 * 214.10117 * 21 19 17 24 24 H 1.48501 * 109.47249 * 334.09801 * 21 19 17 25 25 H 1.08998 * 109.47454 * 55.23519 * 1 2 3 26 26 H 1.08995 * 109.47258 * 175.24060 * 1 2 3 27 27 H 1.09000 * 109.46787 * 295.23991 * 1 2 3 28 28 H 1.08997 * 109.47243 * 304.75184 * 3 2 1 29 29 H 1.09004 * 109.46947 * 64.74683 * 3 2 1 30 30 H 1.08997 * 109.47505 * 303.22736 * 4 3 2 31 31 H 1.09002 * 109.46674 * 63.22747 * 4 3 2 32 32 H 1.07998 * 125.65396 * 0.03356 * 6 5 4 33 33 H 1.08001 * 125.98848 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.46811 * 214.76245 * 10 9 8 35 35 H 1.08998 * 109.47225 * 334.76702 * 10 9 8 36 36 H 1.00890 * 111.00780 * 39.38528 * 11 10 9 37 37 H 1.08996 * 109.46885 * 185.13756 * 14 12 11 38 38 H 1.08997 * 109.46592 * 305.13778 * 14 12 11 39 39 H 1.08996 * 109.46747 * 65.13938 * 14 12 11 40 40 H 1.09004 * 109.46947 * 185.16503 * 15 12 11 41 41 H 1.08999 * 109.47193 * 305.15925 * 15 12 11 42 42 H 1.09004 * 109.46734 * 304.18772 * 16 15 12 43 43 H 1.09007 * 109.47163 * 64.18845 * 16 15 12 44 44 H 0.97005 * 120.00004 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5309 1.1867 -0.1193 5 7 4.1325 2.5203 -0.0419 6 6 4.4476 3.3189 -1.0843 7 7 4.9628 4.4255 -0.6228 8 6 4.9941 4.3737 0.7171 9 6 4.4734 3.1924 1.1007 10 6 4.3025 2.7031 2.5157 11 7 2.9444 3.0146 2.9809 12 6 2.8683 4.3858 3.5025 13 1 3.8758 4.7768 3.6453 14 6 2.1150 5.2694 2.5060 15 6 2.1282 4.3818 4.8416 16 6 2.9467 3.6046 5.8744 17 6 2.1716 3.5124 7.1635 18 1 1.1612 3.8905 7.2143 19 6 2.7524 2.9456 8.2781 20 7 2.1179 2.9610 9.4299 21 14 4.4405 2.1559 8.1521 22 1 5.4801 3.1475 8.5281 23 1 4.5120 0.9913 9.0708 24 1 4.6716 1.7011 6.7575 25 1 -0.3634 0.5860 -0.8442 26 1 -0.3633 -1.0241 -0.0853 27 1 -0.3633 0.4382 0.9296 28 1 1.6229 1.8757 -0.8443 29 1 1.7575 1.8157 0.9295 30 1 3.9120 0.5685 0.6935 31 1 3.7856 0.7281 -1.0748 32 1 4.2973 3.0815 -2.1272 33 1 5.3675 5.1457 1.3736 34 1 4.4594 1.6249 2.5487 35 1 5.0297 3.1960 3.1609 36 1 2.2682 2.8692 2.2465 37 1 2.1374 6.3039 2.8486 38 1 2.5903 5.2002 1.5276 39 1 1.0807 4.9334 2.4322 40 1 1.9909 5.4076 5.1839 41 1 1.1549 3.9070 4.7174 42 1 3.1473 2.6013 5.4985 43 1 3.8899 4.1208 6.0536 44 1 2.5263 2.5618 10.2140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:56 Heat of formation + Delta-G solvation = 9.713419 kcal Electronic energy + Delta-G solvation = -22688.764842 eV Core-core repulsion = 19449.237500 eV Total energy + Delta-G solvation = -3239.527342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.34338 -38.35334 -37.41364 -34.69551 -33.44764 -32.05837 -30.06547 -29.62698 -28.77081 -26.59756 -25.28537 -24.56273 -23.74307 -21.74566 -21.07746 -19.95504 -19.80973 -17.69942 -16.66505 -16.57221 -16.35693 -15.91440 -15.28869 -15.12341 -14.85093 -14.40341 -14.11107 -13.93647 -13.62798 -13.38266 -12.87818 -12.70253 -12.55171 -12.48551 -12.29429 -12.03870 -11.96915 -11.71419 -11.45616 -11.35090 -10.83548 -10.46902 -10.17538 -10.10616 -9.83716 -9.79513 -9.64372 -9.47043 -9.04691 -8.67503 -8.40324 -8.05896 -5.94578 -3.89633 1.79603 2.34208 3.02625 3.37288 3.44974 3.51532 3.52042 4.20923 4.34896 4.47839 4.52510 4.55260 4.62647 4.78847 4.90858 4.97277 5.06389 5.11614 5.23836 5.29140 5.35429 5.38230 5.41051 5.49780 5.59424 5.67902 5.80583 6.02061 6.18166 6.22220 6.32895 6.50509 6.57911 6.64594 6.72007 6.99192 7.11168 7.22201 7.50541 7.54767 7.74284 7.91170 7.94363 8.66634 9.12319 9.70029 11.19482 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.004505 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.449549 B = 6213.570935 C = 6905.299149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.047 3.953 4 C 0.105 3.895 5 N -0.451 5.451 6 C 0.177 3.823 7 N -0.492 5.492 8 C -0.018 4.018 9 C -0.051 4.051 10 C 0.128 3.872 11 N -0.662 5.662 12 C 0.079 3.921 13 H 0.068 0.932 14 C -0.173 4.173 15 C -0.089 4.089 16 C -0.007 4.007 17 C -0.515 4.515 18 H 0.067 0.933 19 C 0.063 3.937 20 N -0.909 5.909 21 Si 0.879 3.121 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.262 1.262 25 H 0.042 0.958 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.202 0.798 33 H 0.167 0.833 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.331 0.669 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.029 0.971 43 H 0.002 0.998 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 -3.478 -23.614 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.031 4.031 4 C -0.018 4.018 5 N -0.136 5.136 6 C -0.105 4.105 7 N -0.209 5.209 8 C -0.166 4.166 9 C -0.167 4.167 10 C -0.002 4.002 11 N -0.292 5.292 12 C -0.030 4.030 13 H 0.086 0.914 14 C -0.232 4.232 15 C -0.127 4.127 16 C -0.045 4.045 17 C -0.553 4.553 18 H 0.086 0.914 19 C -0.137 4.137 20 N -0.549 5.549 21 Si 0.706 3.294 22 H -0.207 1.207 23 H -0.216 1.216 24 H -0.187 1.187 25 H 0.061 0.939 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.219 0.781 33 H 0.184 0.816 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.151 0.849 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.021 0.979 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.788 -3.474 -23.267 23.593 hybrid contribution 0.329 -0.338 -0.351 0.588 sum 2.117 -3.812 -23.618 24.017 Atomic orbital electron populations 1.22814 0.79817 1.03151 1.00626 1.87799 1.20666 1.26424 1.95551 1.22824 0.92801 0.85854 1.01619 1.21586 0.92428 0.81906 1.05847 1.45301 1.46499 1.14981 1.06868 1.24950 1.03154 0.87972 0.94452 1.70292 1.19189 1.21130 1.10318 1.22107 1.05716 0.97218 0.91573 1.22589 1.07593 0.95841 0.90652 1.20814 0.92544 1.01211 0.85673 1.60926 1.03707 1.26607 1.37912 1.21904 0.99630 0.85908 0.95525 0.91397 1.22430 1.00591 1.01018 0.99159 1.21477 0.99030 0.99886 0.92301 1.19486 0.94839 0.96080 0.94063 1.21237 1.01612 1.38777 0.93673 0.91437 1.25025 0.97534 0.95912 0.95183 1.69943 1.38947 1.46053 0.99921 0.86760 0.84961 0.79253 0.78403 1.20685 1.21646 1.18657 0.93946 0.89143 0.93234 0.92669 0.91992 0.87812 0.87962 0.78112 0.81562 0.90255 0.88462 0.84897 0.92038 0.93214 0.92842 0.93029 0.92775 0.95295 0.97921 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.68 10.70 -35.23 -0.38 -4.06 16 3 C 0.05 0.40 6.27 37.15 0.23 0.63 16 4 C 0.11 0.83 6.32 -4.04 -0.03 0.80 16 5 N -0.45 -4.44 2.75 -113.99 -0.31 -4.76 16 6 C 0.18 1.80 12.56 -90.37 -1.14 0.66 16 7 N -0.49 -6.47 11.25 -14.66 -0.16 -6.64 16 8 C -0.02 -0.23 10.86 -17.81 -0.19 -0.42 16 9 C -0.05 -0.60 5.78 -81.60 -0.47 -1.07 16 10 C 0.13 1.63 6.20 -4.98 -0.03 1.60 16 11 N -0.66 -9.54 5.91 -107.99 -0.64 -10.18 16 12 C 0.08 1.22 2.63 -67.71 -0.18 1.05 16 13 H 0.07 1.04 7.17 -51.93 -0.37 0.67 16 14 C -0.17 -2.30 9.06 37.16 0.34 -1.97 16 15 C -0.09 -1.75 4.83 -26.73 -0.13 -1.88 16 16 C -0.01 -0.17 3.98 -27.88 -0.11 -0.29 16 17 C -0.51 -14.97 9.65 -34.44 -0.33 -15.30 16 18 H 0.07 2.11 7.99 -52.49 -0.42 1.70 16 19 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 20 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 21 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.26 -6.33 6.55 56.52 0.37 -5.96 16 25 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.42 8.12 -51.93 -0.42 -0.01 16 29 H 0.06 0.61 5.74 -51.93 -0.30 0.31 16 30 H 0.10 0.86 7.42 -51.93 -0.39 0.48 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 34 H 0.08 0.97 7.44 -51.93 -0.39 0.58 16 35 H 0.10 1.28 7.39 -51.93 -0.38 0.90 16 36 H 0.33 4.36 5.53 -39.30 -0.22 4.14 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.64 6.80 -51.93 -0.35 0.29 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.03 0.70 6.82 -51.93 -0.35 0.35 16 43 H 0.00 0.06 7.47 -51.93 -0.39 -0.33 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -33.77 354.86 -8.44 -42.21 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.37 Total: 1.47 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.02 Total: -13.03 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.34 Total: -49.45 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.38 Total: -4.06 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.77 -8.44 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.923 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds