Wall clock time and date at job start Tue Mar 31 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00163 * 2 1 4 4 C 1.53003 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46616 * 180.02562 * 4 3 2 6 6 C 1.35044 * 126.39828 * 269.99346 * 5 4 3 7 7 N 1.30504 * 108.69948 * 179.77138 * 6 5 4 8 8 C 1.34120 * 109.25481 * 0.38505 * 7 6 5 9 9 C 1.50701 * 125.98890 * 179.88218 * 8 7 6 10 10 N 1.46901 * 109.46921 * 274.68930 * 9 8 7 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46871 * 35.00433 * 11 10 9 13 13 C 1.52994 * 109.47113 * 275.00325 * 11 10 9 14 14 C 1.53002 * 109.47092 * 155.00227 * 11 10 9 15 15 C 1.53004 * 109.47119 * 295.00039 * 14 11 10 16 16 C 1.50696 * 109.47273 * 179.97438 * 15 14 11 17 17 H 1.08008 * 119.99688 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00287 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99620 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00272 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47062 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47183 * 119.99978 * 20 18 16 23 23 H 1.48504 * 109.47125 * 240.00444 * 20 18 16 24 24 C 1.34669 * 108.02576 * 359.61898 * 8 7 6 25 25 H 1.08995 * 109.47388 * 300.00197 * 1 2 3 26 26 H 1.09004 * 109.46979 * 60.00034 * 1 2 3 27 27 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47032 * 60.00274 * 3 2 1 29 29 H 1.09005 * 109.47130 * 300.00079 * 3 2 1 30 30 H 1.09000 * 109.46898 * 60.00283 * 4 3 2 31 31 H 1.08993 * 109.46934 * 300.00132 * 4 3 2 32 32 H 1.08003 * 125.64815 * 0.02562 * 6 5 4 33 33 H 1.09002 * 109.47060 * 34.69111 * 9 8 7 34 34 H 1.09001 * 109.47380 * 154.69199 * 9 8 7 35 35 H 1.00899 * 111.00283 * 303.95218 * 10 9 8 36 36 H 1.09003 * 109.47340 * 299.99821 * 13 11 10 37 37 H 1.08995 * 109.47731 * 59.99955 * 13 11 10 38 38 H 1.08996 * 109.47268 * 180.02562 * 13 11 10 39 39 H 1.08998 * 109.46846 * 54.99830 * 14 11 10 40 40 H 1.08995 * 109.47022 * 175.00292 * 14 11 10 41 41 H 1.08999 * 109.47179 * 300.00188 * 15 14 11 42 42 H 1.09004 * 109.46918 * 59.99924 * 15 14 11 43 43 H 0.97000 * 119.99481 * 179.97438 * 19 18 16 44 44 H 1.07999 * 126.59917 * 180.20770 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1313 2.5229 0.0013 6 6 4.4578 3.2553 -1.0854 7 7 4.9587 4.3930 -0.6881 8 6 4.9775 4.4239 0.6526 9 6 5.4820 5.5595 1.5052 10 7 6.9344 5.4298 1.6840 11 6 7.4625 6.5226 2.5115 12 1 6.7293 6.7888 3.2729 13 6 7.7459 7.7397 1.6288 14 6 8.7584 6.0701 3.1875 15 6 8.4536 4.9330 4.1649 16 6 9.7300 4.4868 4.8302 17 1 10.6651 4.9666 4.5811 18 6 9.7041 3.4669 5.7576 19 7 8.5653 2.8831 6.0612 20 14 11.2861 2.9143 6.5827 21 1 12.4204 3.7250 6.0715 22 1 11.1689 3.0987 8.0516 23 1 11.5268 1.4802 6.2815 24 6 4.4613 3.2647 1.1034 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8574 0.6435 -0.8891 31 1 3.8567 0.6438 0.8908 32 1 4.3226 2.9515 -2.1130 33 1 5.2593 6.5078 1.0161 34 1 4.9921 5.5287 2.4784 35 1 7.1716 4.5312 2.0768 36 1 8.4791 7.4736 0.8674 37 1 6.8228 8.0622 1.1473 38 1 8.1382 8.5504 2.2427 39 1 9.4600 5.7200 2.4303 40 1 9.1970 6.9076 3.7298 41 1 7.7519 5.2830 4.9220 42 1 8.0150 4.0954 3.6225 43 1 8.5472 2.1653 6.7134 44 1 4.3325 2.9755 2.1360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:59 Heat of formation + Delta-G solvation = 2.927169 kcal Electronic energy + Delta-G solvation = -21511.407945 eV Core-core repulsion = 18271.586329 eV Total energy + Delta-G solvation = -3239.821616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03691 -38.42889 -37.09038 -34.67010 -33.21703 -31.74311 -29.89337 -29.45778 -28.48880 -26.72262 -25.35069 -24.35045 -23.48420 -21.31667 -20.97173 -20.06859 -19.38726 -17.57666 -16.53430 -16.47603 -16.28655 -15.79220 -15.21473 -14.88930 -14.56855 -14.43553 -14.31367 -13.84747 -13.55580 -13.34284 -12.56368 -12.50979 -12.45490 -12.18096 -12.01911 -11.93260 -11.73099 -11.46316 -11.30519 -10.99895 -10.88716 -10.44297 -10.22166 -10.20450 -9.82693 -9.68190 -9.56354 -9.22280 -8.98076 -8.35286 -8.32764 -7.79325 -5.99053 -4.00169 2.03101 2.46945 3.20855 3.32076 3.39537 3.44451 3.54148 4.29173 4.47785 4.48332 4.62172 4.79555 4.86139 4.87510 4.91985 4.94109 5.08251 5.21643 5.26593 5.36863 5.40212 5.54102 5.65693 5.85387 5.96122 6.04089 6.09853 6.28578 6.30160 6.48397 6.55413 6.62273 6.64532 6.80331 7.00620 7.15240 7.20016 7.63996 7.66941 7.86564 7.99269 8.06547 8.21219 8.45895 9.06798 9.63754 11.12282 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013635 B = 0.003452 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.110922 B = 8109.042308 C = 9769.487433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.048 3.952 4 C 0.109 3.891 5 N -0.460 5.460 6 C 0.176 3.824 7 N -0.473 5.473 8 C 0.017 3.983 9 C 0.143 3.857 10 N -0.679 5.679 11 C 0.083 3.917 12 H 0.037 0.963 13 C -0.136 4.136 14 C -0.115 4.115 15 C 0.020 3.980 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.047 4.047 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.202 0.798 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.351 0.649 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.258 0.742 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.354 -2.566 -13.103 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.030 4.030 4 C -0.015 4.015 5 N -0.145 5.145 6 C -0.106 4.106 7 N -0.191 5.191 8 C -0.112 4.112 9 C 0.013 3.987 10 N -0.314 5.314 11 C -0.026 4.026 12 H 0.055 0.945 13 C -0.194 4.194 14 C -0.152 4.152 15 C -0.017 4.017 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.180 4.180 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.219 0.781 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.172 0.828 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.068 0.932 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.945 -2.058 -14.086 21.375 hybrid contribution -0.080 -1.253 1.908 2.284 sum -16.025 -3.311 -12.179 20.398 Atomic orbital electron populations 1.22785 0.80081 1.03141 1.00311 1.87810 1.20454 1.26897 1.95547 1.22805 0.93222 0.85402 1.01557 1.21542 0.91848 0.81852 1.06222 1.45300 1.47079 1.14881 1.07273 1.24994 1.03249 0.88898 0.93474 1.70182 1.18119 1.19044 1.11744 1.20587 1.03920 0.96170 0.90541 1.20106 0.88781 0.94768 0.95050 1.60550 1.10158 1.06935 1.53780 1.21596 0.97227 0.91205 0.92583 0.94520 1.21782 1.01004 0.96838 0.99744 1.21826 0.94850 0.99972 0.98596 1.19130 0.96894 0.92374 0.93273 1.21299 0.94203 1.17505 1.22395 0.92627 1.25020 0.96087 0.96524 0.96880 1.69972 1.24975 1.24901 1.33799 0.86554 0.83894 0.78473 0.79202 1.19726 1.21097 1.21060 1.22619 1.08530 0.94142 0.92675 0.93736 0.93844 0.89170 0.92381 0.92491 0.87969 0.87967 0.78149 0.90409 0.94346 0.82772 0.92395 0.93686 0.93174 0.92490 0.92753 0.96961 0.96663 0.93195 0.80817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.34 10.70 -35.23 -0.38 -3.72 16 3 C 0.05 0.37 6.26 37.16 0.23 0.61 16 4 C 0.11 0.90 6.52 -4.04 -0.03 0.88 16 5 N -0.46 -5.22 2.75 -118.57 -0.33 -5.54 16 6 C 0.18 2.14 12.56 -90.37 -1.14 1.00 16 7 N -0.47 -7.51 11.25 -10.87 -0.12 -7.63 16 8 C 0.02 0.26 6.60 -82.86 -0.55 -0.28 16 9 C 0.14 2.31 6.02 -4.97 -0.03 2.28 16 10 N -0.68 -12.45 6.30 -107.99 -0.68 -13.13 16 11 C 0.08 1.52 2.65 -67.71 -0.18 1.34 16 12 H 0.04 0.68 7.80 -51.93 -0.41 0.27 16 13 C -0.14 -2.15 9.41 37.15 0.35 -1.80 16 14 C -0.11 -2.44 4.74 -26.73 -0.13 -2.56 16 15 C 0.02 0.53 4.80 -27.88 -0.13 0.39 16 16 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 20 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.05 -0.64 11.49 -16.56 -0.19 -0.83 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.20 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.08 1.23 7.44 -51.93 -0.39 0.85 16 34 H 0.04 0.59 8.06 -51.93 -0.42 0.18 16 35 H 0.35 7.07 6.46 -39.29 -0.25 6.82 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.04 0.66 7.45 -51.93 -0.39 0.28 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.41 6.43 -51.93 -0.33 0.07 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 365.30 15.07 5.50 5.50 Total: -1.00 -33.05 365.30 -9.01 -42.06 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.64 Total: 2.92 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -1.09 Total: -11.22 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.39 Total: -52.39 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.38 Total: -3.72 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.05 -9.01 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.989 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds