Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00144 * 2 1 4 4 C 1.52999 * 109.47073 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47088 * 180.02562 * 4 3 2 6 6 C 1.35043 * 126.39464 * 269.99649 * 5 4 3 7 7 N 1.30504 * 108.69777 * 179.76669 * 6 5 4 8 8 C 1.34129 * 109.25337 * 0.38429 * 7 6 5 9 9 C 1.50697 * 125.98415 * 179.88431 * 8 7 6 10 10 N 1.46901 * 109.46943 * 274.68609 * 9 8 7 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47224 * 325.00460 * 11 10 9 13 13 C 1.53002 * 109.47102 * 85.00132 * 11 10 9 14 14 C 1.52996 * 109.46819 * 205.00022 * 11 10 9 15 15 C 1.53002 * 109.47140 * 65.00372 * 14 11 10 16 16 C 1.50702 * 109.47074 * 179.97438 * 15 14 11 17 17 H 1.08000 * 120.00093 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99892 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00209 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47535 * 89.99900 * 20 18 16 22 22 H 1.48502 * 109.47321 * 210.00057 * 20 18 16 23 23 H 1.48497 * 109.47073 * 329.99560 * 20 18 16 24 24 C 1.34668 * 108.02101 * 359.62042 * 8 7 6 25 25 H 1.09005 * 109.46902 * 60.00196 * 1 2 3 26 26 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47136 * 300.00513 * 1 2 3 28 28 H 1.09000 * 109.46867 * 59.99962 * 3 2 1 29 29 H 1.09000 * 109.47366 * 299.99847 * 3 2 1 30 30 H 1.09002 * 109.47365 * 59.99753 * 4 3 2 31 31 H 1.09000 * 109.46979 * 300.00181 * 4 3 2 32 32 H 1.08000 * 125.64884 * 0.02562 * 6 5 4 33 33 H 1.09004 * 109.46763 * 154.69050 * 9 8 7 34 34 H 1.08995 * 109.47483 * 34.68707 * 9 8 7 35 35 H 1.00901 * 111.00067 * 303.95401 * 10 9 8 36 36 H 1.08999 * 109.47105 * 180.02562 * 13 11 10 37 37 H 1.08996 * 109.46950 * 299.99914 * 13 11 10 38 38 H 1.09000 * 109.46959 * 59.99562 * 13 11 10 39 39 H 1.09006 * 109.47142 * 184.99909 * 14 11 10 40 40 H 1.08991 * 109.47453 * 304.99990 * 14 11 10 41 41 H 1.08993 * 109.46652 * 299.99542 * 15 14 11 42 42 H 1.09003 * 109.46959 * 59.99778 * 15 14 11 43 43 H 0.97005 * 120.00118 * 179.97438 * 19 18 16 44 44 H 1.08001 * 126.58902 * 180.20886 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 4.4579 3.2552 -1.0854 7 7 4.9588 4.3929 -0.6882 8 6 4.9776 4.4238 0.6526 9 6 5.4821 5.5595 1.5051 10 7 6.9345 5.4298 1.6839 11 6 7.4625 6.5220 2.5123 12 1 6.9062 7.4364 2.3057 13 6 7.3141 6.1581 3.9910 14 6 8.9414 6.7400 2.1866 15 6 9.0794 7.2247 0.7420 16 6 10.5361 7.4400 0.4214 17 1 11.2882 7.2505 1.1729 18 6 10.9087 7.8789 -0.8314 19 7 9.9929 8.1091 -1.7468 20 14 12.7143 8.1450 -1.2291 21 1 13.2927 6.8887 -1.7696 22 1 12.8446 9.2250 -2.2400 23 1 13.4412 8.5332 0.0063 24 6 4.4614 3.2646 1.1033 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8575 0.6434 -0.8891 31 1 3.8567 0.6438 0.8908 32 1 4.3226 2.9514 -2.1130 33 1 4.9921 5.5287 2.4783 34 1 5.2595 6.5077 1.0160 35 1 7.1716 4.5312 2.0767 36 1 7.7055 6.9687 4.6057 37 1 6.2605 6.0028 4.2230 38 1 7.8703 5.2437 4.1977 39 1 9.3557 7.4885 2.8621 40 1 9.4824 5.8017 2.3083 41 1 8.6651 6.4763 0.0666 42 1 8.5384 8.1632 0.6204 43 1 10.2550 8.4183 -2.6281 44 1 4.3326 2.9756 2.1360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = 7.560273 kcal Electronic energy + Delta-G solvation = -21392.423355 eV Core-core repulsion = 18152.802645 eV Total energy + Delta-G solvation = -3239.620710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.05968 -38.50289 -37.10628 -34.69519 -33.13518 -31.69318 -29.93381 -29.45055 -28.35907 -26.77013 -25.17740 -24.43418 -23.53971 -21.20076 -21.00365 -20.22738 -19.53442 -17.62363 -16.56607 -16.52480 -15.98111 -15.86053 -15.20024 -14.77631 -14.56934 -14.39862 -14.28044 -13.87538 -13.62281 -13.38207 -12.74943 -12.53558 -12.38211 -12.17023 -12.06812 -12.03246 -11.83454 -11.51554 -11.22383 -11.01406 -10.74934 -10.35657 -10.29810 -10.12252 -9.71569 -9.57476 -9.48951 -9.07127 -8.76931 -8.38552 -8.10309 -7.68296 -5.75282 -3.76586 1.97766 2.41884 3.23560 3.45113 3.47225 3.50504 3.53862 4.20881 4.41230 4.63819 4.64129 4.72592 4.78608 4.80421 4.84350 4.88838 5.00750 5.14225 5.18003 5.29790 5.44143 5.48377 5.59216 5.67100 5.78304 5.82756 6.09680 6.20113 6.26653 6.36334 6.47667 6.52896 6.77627 6.81418 7.01658 7.17396 7.45460 7.66322 7.96705 7.98474 8.23127 8.25598 8.41542 8.70911 9.33255 9.85023 11.35539 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.002849 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.767986 B = 9825.301471 C =10705.378749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.047 3.953 4 C 0.110 3.890 5 N -0.462 5.462 6 C 0.181 3.819 7 N -0.462 5.462 8 C 0.023 3.977 9 C 0.143 3.857 10 N -0.662 5.662 11 C 0.084 3.916 12 H 0.072 0.928 13 C -0.180 4.180 14 C -0.097 4.097 15 C 0.029 3.971 16 C -0.517 4.517 17 H 0.049 0.951 18 C 0.055 3.945 19 N -0.892 5.892 20 Si 0.886 3.114 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.060 4.060 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.203 0.797 33 H 0.033 0.967 34 H 0.084 0.916 35 H 0.332 0.668 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.035 0.965 42 H 0.006 0.994 43 H 0.257 0.743 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.463 -16.039 6.983 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.031 4.031 4 C -0.013 4.013 5 N -0.148 5.148 6 C -0.101 4.101 7 N -0.179 5.179 8 C -0.107 4.107 9 C 0.013 3.987 10 N -0.293 5.293 11 C -0.025 4.025 12 H 0.091 0.909 13 C -0.239 4.239 14 C -0.135 4.135 15 C -0.008 4.008 16 C -0.556 4.556 17 H 0.068 0.932 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.192 4.192 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.220 0.780 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.025 0.975 43 H 0.067 0.933 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.012 -15.320 5.691 25.838 hybrid contribution 0.143 -0.642 1.038 1.229 sum -19.869 -15.962 6.730 26.360 Atomic orbital electron populations 1.22788 0.80036 1.03141 1.00367 1.87802 1.20497 1.26957 1.95564 1.22817 0.93251 0.85357 1.01632 1.21508 0.91833 0.81980 1.05990 1.45345 1.47331 1.14847 1.07300 1.25123 1.02713 0.88740 0.93525 1.70312 1.17168 1.18782 1.11650 1.20630 1.03409 0.95840 0.90776 1.20124 0.88443 0.95553 0.94571 1.60451 1.10156 1.05185 1.53473 1.21750 0.98662 0.93822 0.88292 0.90925 1.22551 1.00336 1.01826 0.99224 1.21619 0.91309 0.99623 1.00988 1.18997 0.95562 0.96311 0.89933 1.21354 0.93236 1.43830 0.97176 0.93225 1.25008 0.96800 0.96084 0.96629 1.69998 1.32318 1.46608 1.04252 0.86706 0.86273 0.77668 0.77952 1.20875 1.21421 1.20120 1.22420 1.09960 0.94517 0.92348 0.93726 0.89166 0.93801 0.92505 0.92322 0.87940 0.88329 0.78004 0.94941 0.89774 0.84984 0.92298 0.93785 0.92879 0.93634 0.93629 0.94660 0.97515 0.93324 0.81313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.93 10.70 -35.23 -0.38 -3.31 16 3 C 0.05 0.32 6.26 37.16 0.23 0.55 16 4 C 0.11 0.78 6.52 -4.04 -0.03 0.75 16 5 N -0.46 -4.84 2.75 -118.58 -0.33 -5.17 16 6 C 0.18 2.31 12.56 -90.37 -1.14 1.17 16 7 N -0.46 -7.97 11.25 -10.87 -0.12 -8.10 16 8 C 0.02 0.35 6.60 -82.85 -0.55 -0.19 16 9 C 0.14 2.23 6.02 -4.98 -0.03 2.20 16 10 N -0.66 -11.72 5.69 -107.99 -0.61 -12.33 16 11 C 0.08 1.49 2.59 -67.71 -0.18 1.32 16 12 H 0.07 1.34 7.80 -51.93 -0.41 0.93 16 13 C -0.18 -2.49 9.16 37.16 0.34 -2.15 16 14 C -0.10 -2.13 4.83 -26.73 -0.13 -2.26 16 15 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 16 C -0.52 -15.64 9.11 -34.44 -0.31 -15.96 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -28.65 13.29 55.43 0.74 -27.91 16 20 Si 0.89 22.87 29.54 -169.99 -5.02 17.85 16 21 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.06 -0.71 11.49 -16.56 -0.19 -0.90 16 25 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.20 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.03 0.42 7.44 -51.93 -0.39 0.03 16 34 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 35 H 0.33 5.38 8.46 -39.29 -0.33 5.05 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 38 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 39 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.04 1.08 7.75 -51.93 -0.40 0.67 16 42 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -36.40 367.83 -9.07 -45.46 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.79 Total: -0.12 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -1.09 Total: -11.92 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.33 Total: -53.50 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: -0.38 Total: -3.31 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.40 -9.07 -45.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.024 kcal (2) G-P(sol) polarization free energy of solvation -36.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds