Wall clock time and date at job start Tue Mar 31 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 C 1.52999 * 109.47102 * 240.00373 * 2 1 3 5 5 C 1.53003 * 109.47435 * 174.99991 * 4 2 1 6 6 C 1.50700 * 109.46980 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00457 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99678 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00286 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00020 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47122 * 89.99826 * 10 8 6 12 12 H 1.48496 * 109.47179 * 209.99736 * 10 8 6 13 13 H 1.48500 * 109.47186 * 329.99887 * 10 8 6 14 14 N 1.46899 * 109.47585 * 120.00542 * 2 1 3 15 15 C 1.46863 * 110.99726 * 295.00075 * 14 2 1 16 16 C 1.53142 * 109.44928 * 186.33704 * 15 14 2 17 17 C 1.52566 * 109.30990 * 301.69312 * 16 15 14 18 18 C 1.53637 * 110.30229 * 178.56160 * 17 16 15 19 19 N 1.47196 * 103.66655 * 118.85909 * 18 17 16 20 20 C 1.34028 * 109.14585 * 0.02562 * 19 18 17 21 21 O 1.21592 * 123.05945 * 179.97438 * 20 19 18 22 22 N 1.34111 * 113.87559 * 359.97438 * 20 19 18 23 23 C 1.52563 * 110.44554 * 56.36588 * 17 16 15 24 24 C 1.46849 * 110.99668 * 59.35114 * 14 2 1 25 25 H 1.08996 * 109.46788 * 59.99368 * 1 2 3 26 26 H 1.08998 * 109.46920 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46472 * 299.99645 * 1 2 3 28 28 H 1.08997 * 109.47326 * 294.99989 * 4 2 1 29 29 H 1.09003 * 109.47009 * 55.00032 * 4 2 1 30 30 H 1.08999 * 109.46497 * 299.99908 * 5 4 2 31 31 H 1.08993 * 109.46849 * 59.99987 * 5 4 2 32 32 H 0.96996 * 120.00297 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47395 * 66.33998 * 15 14 2 34 34 H 1.09004 * 109.47197 * 306.32825 * 15 14 2 35 35 H 1.09004 * 109.49249 * 181.74870 * 16 15 14 36 36 H 1.08995 * 109.50037 * 61.64566 * 16 15 14 37 37 H 1.08997 * 110.58717 * 0.31709 * 18 17 16 38 38 H 1.08999 * 110.58808 * 237.40318 * 18 17 16 39 39 H 0.97000 * 125.42324 * 179.74188 * 19 18 17 40 40 H 0.97006 * 125.51683 * 180.02562 * 22 20 19 41 41 H 1.09005 * 109.49606 * 63.59554 * 23 17 16 42 42 H 1.09007 * 109.49623 * 183.68458 * 23 17 16 43 43 H 1.08999 * 109.47668 * 293.66351 * 24 14 2 44 44 H 1.09000 * 109.47544 * 53.67729 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 6 4.0670 -1.3231 -2.5447 7 1 3.3686 -1.8035 -3.2138 8 6 5.4183 -1.3591 -2.8166 9 7 5.8567 -1.9790 -3.8904 10 14 6.6263 -0.5275 -1.6596 11 1 7.0622 -1.4946 -0.6204 12 1 7.8080 -0.0617 -2.4290 13 1 5.9692 0.6349 -1.0097 14 7 2.0198 -0.6926 1.1993 15 6 1.6489 0.0388 2.4177 16 6 2.3080 -0.6240 3.6308 17 6 1.8637 -2.0812 3.7130 18 6 2.5404 -2.7785 4.9030 19 7 1.4113 -3.1905 5.7527 20 6 0.2639 -2.8087 5.1746 21 8 -0.8286 -3.0229 5.6636 22 7 0.4306 -2.1690 4.0077 23 6 2.1914 -2.8123 2.4147 24 6 1.5363 -2.0786 1.2409 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.7517 -1.7714 -1.2057 29 1 1.6054 -0.2616 -2.1370 30 1 3.8531 0.4370 -1.3574 31 1 3.9995 -1.0728 -0.4262 32 1 6.8073 -2.0046 -4.0815 33 1 0.5657 0.0201 2.5372 34 1 1.9882 1.0717 2.3389 35 1 2.0083 -0.1005 4.5388 36 1 3.3919 -0.5795 3.5255 37 1 3.1880 -2.0832 5.4370 38 1 3.1046 -3.6485 4.5672 39 1 1.4855 -3.6664 6.5947 40 1 -0.2820 -1.8207 3.4492 41 1 3.2719 -2.8345 2.2725 42 1 1.8096 -3.8320 2.4651 43 1 0.4539 -2.0822 1.3687 44 1 1.7939 -2.5814 0.3087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172509649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:49 Heat of formation + Delta-G solvation = -22.541374 kcal Electronic energy + Delta-G solvation = -23411.280732 eV Core-core repulsion = 20170.354717 eV Total energy + Delta-G solvation = -3240.926015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.66187 -39.07539 -36.86797 -34.56029 -33.09870 -32.27797 -31.16463 -30.63821 -29.25905 -26.47015 -25.37039 -23.53035 -22.82340 -21.84815 -21.02935 -20.15562 -19.10821 -17.50324 -16.64400 -16.28518 -16.17550 -15.98088 -15.08377 -14.78083 -14.53057 -14.27424 -14.11065 -14.02273 -13.50535 -13.29983 -13.06167 -12.78415 -12.52286 -12.43607 -12.05141 -11.77474 -11.57126 -11.51888 -11.21291 -10.98519 -10.87344 -10.52326 -10.36707 -10.28818 -9.92407 -9.63783 -9.54276 -9.47946 -9.06744 -9.03005 -8.47650 -8.00284 -5.98703 -3.95457 2.67612 3.01186 3.35088 3.42236 3.48248 3.76997 3.98841 4.10714 4.44981 4.51194 4.56929 5.02327 5.11060 5.12852 5.17308 5.24491 5.29536 5.36918 5.37298 5.41136 5.54571 5.58988 5.63165 5.72615 5.83731 5.92732 5.96105 6.10397 6.14338 6.15666 6.24571 6.47389 6.66138 6.80521 7.00965 7.02537 7.25391 7.31651 7.33303 7.47913 7.63312 7.88917 8.48311 8.60662 9.07162 9.65160 11.15103 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.004501 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.662503 B = 6219.997598 C = 6772.732572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.079 3.921 3 H 0.079 0.921 4 C -0.096 4.096 5 C -0.005 4.005 6 C -0.519 4.519 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.909 5.909 10 Si 0.882 3.118 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.265 1.265 14 N -0.521 5.521 15 C 0.055 3.945 16 C -0.117 4.117 17 C 0.150 3.850 18 C 0.099 3.901 19 N -0.742 5.742 20 C 0.701 3.299 21 O -0.597 6.597 22 N -0.727 5.727 23 C -0.118 4.118 24 C 0.051 3.949 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.009 0.991 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.427 0.573 40 H 0.426 0.574 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 1.548 17.699 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.029 4.029 3 H 0.097 0.903 4 C -0.134 4.134 5 C -0.043 4.043 6 C -0.557 4.557 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.548 5.548 10 Si 0.710 3.290 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.189 1.189 14 N -0.245 5.245 15 C -0.074 4.074 16 C -0.156 4.156 17 C 0.062 3.938 18 C -0.026 4.026 19 N -0.405 5.405 20 C 0.400 3.600 21 O -0.476 6.476 22 N -0.388 5.388 23 C -0.157 4.157 24 C -0.077 4.077 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.268 0.732 40 H 0.268 0.732 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.875 1.394 17.814 19.145 hybrid contribution -0.273 0.386 0.539 0.717 sum -7.148 1.781 18.353 19.776 Atomic orbital electron populations 1.22497 0.98563 1.01799 1.01584 1.21900 0.91437 0.98617 0.90899 0.90311 1.21593 0.99248 0.98963 0.93597 1.19464 0.91157 0.96438 0.97192 1.21249 0.92818 1.34045 1.07579 0.91461 1.25028 0.98463 0.95006 0.95085 1.69929 1.14462 1.43911 1.26523 0.86739 0.80569 0.80643 0.81066 1.20395 1.21835 1.18909 1.62066 1.59540 1.01582 1.01353 1.22052 0.97265 0.98172 0.89869 1.21913 1.02361 0.93160 0.98127 1.20951 0.80853 0.96665 0.95320 1.22492 0.89876 0.99890 0.90325 1.45160 1.05978 1.63361 1.25984 1.16021 0.84309 0.78430 0.81241 1.90980 1.25503 1.63236 1.67866 1.45280 1.08203 1.62125 1.23242 1.21940 1.03081 0.98367 0.92314 1.22151 0.96238 0.89770 0.99533 0.92079 0.92589 0.93360 0.92657 0.92606 0.97246 0.95626 0.92932 0.95158 0.90507 0.91149 0.89239 0.89749 0.89568 0.73193 0.73216 0.89043 0.90962 0.95229 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 8.51 37.16 0.32 -1.93 16 2 C 0.08 1.15 2.35 -67.71 -0.16 0.99 16 3 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 4 C -0.10 -1.77 4.44 -26.73 -0.12 -1.89 16 5 C -0.01 -0.12 3.93 -27.88 -0.11 -0.23 16 6 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 7 H 0.07 2.04 7.99 -52.49 -0.42 1.62 16 8 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 9 N -0.91 -27.96 13.96 55.43 0.77 -27.19 16 10 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 14 N -0.52 -6.89 4.08 -226.54 -0.92 -7.81 16 15 C 0.05 0.58 4.92 -3.77 -0.02 0.56 16 16 C -0.12 -1.05 4.91 -26.88 -0.13 -1.19 16 17 C 0.15 1.36 0.88 -131.90 -0.12 1.24 16 18 C 0.10 0.73 7.34 -3.33 -0.02 0.71 16 19 N -0.74 -6.70 6.39 -64.79 -0.41 -7.11 16 20 C 0.70 8.80 8.92 -88.18 -0.79 8.02 16 21 O -0.60 -10.09 18.05 5.29 0.10 -10.00 16 22 N -0.73 -7.63 5.18 -52.86 -0.27 -7.90 16 23 C -0.12 -1.23 4.91 -26.88 -0.13 -1.36 16 24 C 0.05 0.63 4.54 -3.78 -0.02 0.61 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 27 H 0.05 0.52 6.66 -51.93 -0.35 0.18 16 28 H 0.05 1.02 6.04 -51.93 -0.31 0.71 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.01 0.22 7.20 -51.93 -0.37 -0.16 16 31 H 0.03 0.59 7.18 -51.93 -0.37 0.21 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.03 0.31 6.04 -51.93 -0.31 0.00 16 34 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.49 7.71 -51.93 -0.40 0.09 16 38 H 0.09 0.55 7.71 -51.93 -0.40 0.15 16 39 H 0.43 3.07 8.96 -40.82 -0.37 2.70 16 40 H 0.43 4.41 7.79 -40.82 -0.32 4.09 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.34 5.94 -51.93 -0.31 0.04 16 44 H 0.09 1.37 5.91 -51.93 -0.31 1.07 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -33.50 331.63 -9.26 -42.76 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.12 Total: 2.88 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.73 Total: -7.56 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.84 Total: -50.02 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.10 Total: -10.00 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.50 -9.26 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.223 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds