Wall clock time and date at job start Tue Mar 31 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.47377 * 2 1 4 4 C 1.52996 * 109.47324 * 120.00306 * 2 1 3 5 5 C 1.53001 * 109.47424 * 183.74326 * 4 2 1 6 6 C 1.50694 * 109.47376 * 175.93134 * 5 4 2 7 7 H 1.07995 * 119.99815 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99925 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00099 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99772 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47245 * 59.99748 * 10 8 6 12 12 H 1.48504 * 109.47011 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47347 * 299.99577 * 10 8 6 14 14 N 1.46900 * 109.47012 * 240.00433 * 2 1 3 15 15 C 1.46849 * 111.00130 * 73.14883 * 14 2 1 16 16 C 1.53143 * 109.45595 * 173.66903 * 15 14 2 17 17 C 1.52561 * 109.32074 * 58.28502 * 16 15 14 18 18 C 1.53638 * 110.30066 * 181.46644 * 17 16 15 19 19 N 1.47191 * 103.66726 * 241.14819 * 18 17 16 20 20 C 1.34022 * 109.14909 * 359.97438 * 19 18 17 21 21 O 1.21581 * 123.06571 * 180.02562 * 20 19 18 22 22 N 1.34122 * 113.87089 * 0.02562 * 20 19 18 23 23 C 1.52562 * 110.45480 * 303.65687 * 17 16 15 24 24 C 1.46852 * 110.99774 * 308.79322 * 14 2 1 25 25 H 1.08999 * 109.47248 * 299.99978 * 1 2 3 26 26 H 1.09003 * 109.47125 * 59.99619 * 1 2 3 27 27 H 1.09000 * 109.46819 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46841 * 303.74145 * 4 2 1 29 29 H 1.08993 * 109.47108 * 63.73735 * 4 2 1 30 30 H 1.08999 * 109.46706 * 295.93883 * 5 4 2 31 31 H 1.09009 * 109.47192 * 55.92880 * 5 4 2 32 32 H 0.97001 * 119.99891 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.47460 * 293.65863 * 15 14 2 34 34 H 1.08995 * 109.47540 * 53.67036 * 15 14 2 35 35 H 1.09007 * 109.49150 * 298.33751 * 16 15 14 36 36 H 1.08997 * 109.52484 * 178.26134 * 16 15 14 37 37 H 1.09001 * 110.58658 * 359.69093 * 18 17 16 38 38 H 1.08992 * 110.58860 * 122.60113 * 18 17 16 39 39 H 0.97000 * 125.42779 * 179.97438 * 19 18 17 40 40 H 0.97004 * 125.50946 * 180.02562 * 22 20 19 41 41 H 1.08999 * 109.49614 * 296.39862 * 23 17 16 42 42 H 1.08995 * 109.50188 * 176.29182 * 23 17 16 43 43 H 1.08997 * 109.47419 * 306.33279 * 24 14 2 44 44 H 1.08991 * 109.47147 * 66.34120 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5672 -0.6403 1.2972 6 6 4.0633 -1.2628 2.5767 7 1 3.3598 -1.6747 3.2850 8 6 5.4153 -1.3056 2.8435 9 7 6.2720 -0.8036 1.9811 10 14 6.0303 -2.0780 4.4292 11 1 5.6088 -3.5009 4.4827 12 1 7.5126 -1.9992 4.4758 13 1 5.4587 -1.3484 5.5894 14 7 2.0197 -0.6924 -1.1995 15 6 1.8204 0.1296 -2.3999 16 6 2.4820 -0.5525 -3.6009 17 6 1.8814 -1.9426 -3.7858 18 6 2.5557 -2.6621 -4.9640 19 7 1.4491 -2.9017 -5.9046 20 6 0.3152 -2.4136 -5.3827 21 8 -0.7577 -2.4768 -5.9512 22 7 0.4719 -1.8491 -4.1762 23 6 2.0323 -2.7629 -2.5084 24 6 1.3852 -2.0090 -1.3429 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6230 -0.2476 2.1379 29 1 1.7325 -1.7664 1.2162 30 1 3.9863 -1.1764 0.4457 31 1 3.8771 0.4041 1.2572 32 1 7.2232 -0.8341 2.1687 33 1 0.7530 0.2435 -2.5893 34 1 2.2690 1.1111 -2.2468 35 1 3.5541 -0.6399 -3.4243 36 1 2.3084 0.0413 -4.4983 37 1 3.3141 -2.0249 -5.4189 38 1 2.9923 -3.6059 -4.6376 39 1 1.5279 -3.3425 -6.7650 40 1 -0.2338 -1.4449 -3.6474 41 1 3.0907 -2.9178 -2.2985 42 1 1.5410 -3.7275 -2.6352 43 1 1.5182 -2.5786 -0.4232 44 1 0.3210 -1.8800 -1.5398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172509650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:51 Heat of formation + Delta-G solvation = -26.304346 kcal Electronic energy + Delta-G solvation = -23284.806167 eV Core-core repulsion = 20043.716978 eV Total energy + Delta-G solvation = -3241.089190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59216 -38.95552 -36.78134 -34.46827 -33.08726 -32.23507 -31.01885 -30.43660 -28.94301 -26.38462 -25.10513 -23.48091 -22.76165 -21.79521 -21.24460 -20.08478 -19.02507 -17.44196 -16.23006 -16.16690 -16.09230 -15.87625 -14.99493 -14.71093 -14.48085 -14.40576 -14.05794 -13.91326 -13.39623 -13.15621 -12.94209 -12.83259 -12.35043 -12.15961 -11.93632 -11.49489 -11.43339 -11.35327 -11.03871 -10.89753 -10.84782 -10.48727 -10.45875 -10.29822 -10.07468 -9.64908 -9.49350 -9.23132 -8.97782 -8.93136 -8.26691 -7.84276 -5.91916 -3.93277 2.73526 3.06386 3.35786 3.40429 3.42826 3.83691 4.08160 4.19780 4.50968 4.53646 4.65454 5.13275 5.19211 5.21237 5.25266 5.34251 5.38761 5.43665 5.45903 5.49896 5.63295 5.68371 5.71336 5.81426 5.94278 6.01669 6.07570 6.18604 6.21810 6.26404 6.35835 6.63341 6.82275 6.85716 7.08081 7.24844 7.31113 7.45646 7.49914 7.81520 8.03428 8.18051 8.53552 8.53773 9.15487 9.69650 11.18854 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.003975 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.778038 B = 7041.808833 C = 7553.468487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.077 0.923 4 C -0.101 4.101 5 C 0.033 3.967 6 C -0.521 4.521 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.516 5.516 15 C 0.056 3.944 16 C -0.117 4.117 17 C 0.150 3.850 18 C 0.099 3.901 19 N -0.743 5.743 20 C 0.701 3.299 21 O -0.598 6.598 22 N -0.727 5.727 23 C -0.118 4.118 24 C 0.055 3.945 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.009 0.991 32 H 0.259 0.741 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.427 0.573 40 H 0.426 0.574 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 -1.394 -13.215 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.026 4.026 3 H 0.095 0.905 4 C -0.139 4.139 5 C -0.004 4.004 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.240 5.240 15 C -0.072 4.072 16 C -0.155 4.155 17 C 0.063 3.937 18 C -0.026 4.026 19 N -0.405 5.405 20 C 0.400 3.600 21 O -0.477 6.477 22 N -0.389 5.389 23 C -0.157 4.157 24 C -0.073 4.073 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.268 0.732 40 H 0.267 0.733 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.494 -1.467 -13.463 15.478 hybrid contribution -0.572 -0.264 0.779 1.002 sum -8.066 -1.731 -12.684 15.131 Atomic orbital electron populations 1.22514 0.98831 1.01674 1.01352 1.21877 0.91060 0.98515 0.91108 0.90452 1.21709 1.00868 0.98172 0.93167 1.18961 0.87935 0.96845 0.96687 1.21316 0.91670 1.38167 1.04794 0.93227 1.24973 0.97113 0.95710 0.96450 1.69961 1.01945 1.46059 1.35374 0.86769 0.77584 0.79877 0.84372 1.20398 1.21391 1.20429 1.62022 1.57795 1.02425 1.01740 1.22038 0.97737 0.97281 0.90126 1.21912 1.01823 0.93767 0.98048 1.20945 0.81233 0.96691 0.94825 1.22498 0.90325 1.01046 0.88709 1.45161 1.08251 1.64440 1.22643 1.16021 0.84072 0.78256 0.81654 1.90971 1.26864 1.65035 1.64867 1.45289 1.10426 1.63428 1.19711 1.21935 1.03566 0.97591 0.92588 1.22085 0.94996 0.91218 0.98971 0.92244 0.93617 0.92568 0.93297 0.93503 0.95120 0.97277 0.93181 0.95557 0.90399 0.89003 0.91234 0.89678 0.89590 0.73235 0.73261 0.88905 0.91184 0.89451 0.95366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.40 37.16 0.31 -2.07 16 2 C 0.08 1.28 2.31 -67.71 -0.16 1.13 16 3 H 0.08 1.26 7.92 -51.92 -0.41 0.85 16 4 C -0.10 -1.97 4.58 -26.73 -0.12 -2.09 16 5 C 0.03 0.82 4.80 -27.89 -0.13 0.68 16 6 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 7 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 10 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 N -0.52 -7.36 4.04 -226.55 -0.91 -8.28 16 15 C 0.06 0.67 5.08 -3.78 -0.02 0.65 16 16 C -0.12 -1.18 4.91 -26.88 -0.13 -1.31 16 17 C 0.15 1.47 0.88 -131.90 -0.12 1.35 16 18 C 0.10 0.79 7.34 -3.33 -0.02 0.77 16 19 N -0.74 -7.02 6.38 -64.79 -0.41 -7.44 16 20 C 0.70 9.08 8.92 -88.18 -0.79 8.30 16 21 O -0.60 -10.31 18.05 5.29 0.10 -10.21 16 22 N -0.73 -7.99 5.18 -52.87 -0.27 -8.26 16 23 C -0.12 -1.29 4.91 -26.88 -0.13 -1.42 16 24 C 0.06 0.71 4.36 -3.77 -0.02 0.69 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.53 6.95 -51.93 -0.36 0.17 16 27 H 0.06 0.71 6.45 -51.93 -0.34 0.37 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.90 6.38 -51.93 -0.33 0.57 16 30 H 0.03 0.81 7.83 -51.93 -0.41 0.40 16 31 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.03 0.30 6.30 -51.93 -0.33 -0.03 16 34 H 0.08 0.95 7.97 -51.93 -0.41 0.53 16 35 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.56 7.71 -51.93 -0.40 0.16 16 38 H 0.09 0.59 7.71 -51.93 -0.40 0.19 16 39 H 0.43 3.23 8.96 -40.82 -0.37 2.86 16 40 H 0.43 4.61 7.80 -40.82 -0.32 4.29 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.28 6.27 -51.93 -0.33 0.96 16 44 H 0.03 0.34 5.89 -51.93 -0.31 0.03 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -32.70 336.05 -9.67 -42.37 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.20 Total: 2.64 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.74 Total: -6.59 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.87 Total: -49.72 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.10 Total: -10.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.70 -9.67 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.062 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds