Wall clock time and date at job start Tue Mar 31 2020 05:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34222 * 117.00058 * 2 1 4 4 O 1.20823 * 120.00440 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99940 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47014 * 59.99732 * 5 3 2 7 7 N 1.46903 * 109.47234 * 179.97438 * 5 3 2 8 8 C 1.46894 * 111.00270 * 205.00209 * 7 5 3 9 9 C 1.52997 * 109.47515 * 154.99879 * 8 7 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47233 * 299.99657 * 10 9 8 12 12 C 1.50706 * 109.46931 * 300.00761 * 11 10 9 13 13 H 1.07999 * 120.00193 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99398 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99730 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47216 * 119.99789 * 16 14 12 19 19 H 1.48500 * 109.47389 * 239.99937 * 16 14 12 20 20 C 1.52997 * 109.46817 * 60.00194 * 11 10 9 21 21 C 1.52999 * 109.46927 * 275.00239 * 8 7 5 22 22 C 1.53004 * 109.46973 * 299.99700 * 5 3 2 23 23 C 1.53000 * 117.49691 * 128.74757 * 22 5 3 24 24 C 1.52999 * 117.49803 * 60.08764 * 22 5 3 25 25 H 1.09003 * 109.47196 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47226 * 300.00611 * 1 2 3 27 27 H 1.09005 * 109.46878 * 60.00338 * 1 2 3 28 28 H 1.00901 * 111.00119 * 81.04479 * 7 5 3 29 29 H 1.09002 * 109.47104 * 34.99612 * 8 7 5 30 30 H 1.09002 * 109.47153 * 59.99762 * 9 8 7 31 31 H 1.09001 * 109.46832 * 299.99953 * 9 8 7 32 32 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 33 33 H 1.09004 * 109.46724 * 180.02562 * 10 9 8 34 34 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 35 35 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47153 * 60.00231 * 20 11 10 37 37 H 1.09001 * 109.47289 * 180.02562 * 20 11 10 38 38 H 1.09000 * 109.47486 * 59.99528 * 21 8 7 39 39 H 1.09002 * 109.46716 * 299.99610 * 21 8 7 40 40 H 1.08993 * 115.54736 * 274.41463 * 22 5 3 41 41 H 1.09005 * 117.49782 * 359.97438 * 23 22 5 42 42 H 1.08995 * 117.49703 * 145.01612 * 23 22 5 43 43 H 1.08990 * 117.50000 * 214.97849 * 24 22 5 44 44 H 1.09001 * 117.49604 * 359.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7804 -0.8891 7 7 3.9829 2.6835 -0.0002 8 6 5.3243 2.8356 -0.5793 9 6 5.4820 4.2519 -1.1359 10 6 6.8790 4.4100 -1.7396 11 6 7.9328 4.1671 -0.6574 12 6 7.7501 5.1672 0.4551 13 1 6.9615 5.9028 0.3959 14 6 8.5898 5.1431 1.5485 15 7 9.5497 4.2471 1.6208 16 14 8.3638 6.3831 2.9271 17 1 7.2220 7.2770 2.6067 18 1 8.0899 5.6658 4.1982 19 1 9.6001 7.1929 3.0722 20 6 7.7751 2.7507 -0.1008 21 6 6.3777 2.5928 0.5034 22 6 4.1129 0.5815 1.2503 23 6 5.2058 -0.4710 1.0533 24 6 3.7874 -0.9021 1.4345 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.9445 3.0724 0.9301 29 1 5.4568 2.1122 -1.3838 30 1 5.3495 4.9753 -0.3314 31 1 4.7315 4.4248 -1.9072 32 1 7.0111 3.6867 -2.5442 33 1 6.9914 5.4193 -2.1358 34 1 8.9280 4.2802 -1.0873 35 1 10.1402 4.2300 2.3902 36 1 7.9072 2.0274 -0.9054 37 1 8.5256 2.5778 0.6706 38 1 6.2654 1.5837 0.8999 39 1 6.2452 3.3162 1.3079 40 1 4.1655 1.2002 2.1460 41 1 5.5352 -0.6697 0.0334 42 1 5.9773 -0.5448 1.8197 43 1 3.6262 -1.2595 2.4514 44 1 3.1835 -1.3841 0.6656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:38 Heat of formation + Delta-G solvation = -71.456742 kcal Electronic energy + Delta-G solvation = -23452.087726 eV Core-core repulsion = 20176.747830 eV Total energy + Delta-G solvation = -3275.339896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.55579 -38.62146 -37.06030 -36.37848 -34.15422 -32.02000 -29.63974 -29.29439 -27.79947 -25.73012 -24.30767 -22.56994 -21.96747 -21.24369 -20.74208 -20.37300 -18.70107 -17.51749 -16.70336 -16.32033 -15.85924 -15.45456 -14.99258 -14.57968 -14.32140 -13.95216 -13.49889 -13.19790 -13.11304 -12.81814 -12.61671 -12.16676 -12.01856 -11.55702 -11.44875 -11.40096 -11.28782 -11.01152 -10.89329 -10.79500 -10.68916 -10.54245 -10.45530 -10.24203 -10.03182 -9.89726 -9.64615 -9.10581 -8.91630 -8.64410 -8.28599 -7.92886 -5.93809 -3.97480 2.32346 2.63670 3.30266 3.39410 3.43702 3.78278 4.46569 4.49350 4.57629 4.79503 4.98271 5.00049 5.00941 5.08015 5.22532 5.36832 5.42396 5.45647 5.62869 5.70392 5.85687 5.90997 6.06792 6.10793 6.16625 6.32834 6.39694 6.46205 6.51364 6.58929 6.79588 6.81066 6.92763 7.08173 7.21894 7.32575 7.49707 7.59701 7.66456 7.79949 7.92107 7.98380 8.19949 8.53540 9.05604 9.65666 11.11899 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021551 B = 0.004720 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.908333 B = 5931.006342 C = 6097.896332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.466 3.534 4 O -0.488 6.488 5 C 0.134 3.866 6 H 0.111 0.889 7 N -0.665 5.665 8 C 0.099 3.901 9 C -0.093 4.093 10 C -0.106 4.106 11 C 0.042 3.958 12 C -0.497 4.497 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.881 3.119 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.103 4.103 21 C -0.133 4.133 22 C -0.185 4.185 23 C -0.161 4.161 24 C -0.171 4.171 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.350 0.650 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.022 0.978 35 H 0.257 0.743 36 H 0.012 0.988 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 -11.559 -2.030 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.306 3.694 4 O -0.373 6.373 5 C 0.022 3.978 6 H 0.129 0.871 7 N -0.296 5.296 8 C -0.009 4.009 9 C -0.131 4.131 10 C -0.145 4.145 11 C 0.024 3.976 12 C -0.535 4.535 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.710 3.290 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.212 1.212 20 C -0.141 4.141 21 C -0.172 4.172 22 C -0.205 4.205 23 C -0.198 4.198 24 C -0.208 4.208 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.170 0.830 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.103 -11.123 -2.515 17.371 hybrid contribution 0.287 0.424 1.650 1.727 sum -12.816 -10.700 -0.865 16.718 Atomic orbital electron populations 1.23189 0.77138 1.03203 1.02342 1.86531 1.22743 1.33891 1.84555 1.23879 0.91845 0.81165 0.72464 1.90650 1.66617 1.36287 1.43706 1.20710 0.86802 0.91877 0.98434 0.87099 1.60342 1.28553 1.11756 1.28914 1.21674 0.84659 0.98181 0.96426 1.21354 0.96339 0.95562 0.99823 1.21558 0.95743 0.99120 0.98042 1.18707 0.93294 0.93039 0.92597 1.21213 1.14393 1.14570 1.03362 0.92617 1.24925 0.95337 0.95545 0.98160 1.69881 1.18561 1.34734 1.29971 0.86700 0.77995 0.81800 0.82514 1.19819 1.21278 1.21230 1.21449 0.95882 0.97314 0.99493 1.22203 0.96599 0.99939 0.98427 1.23038 1.05399 0.92630 0.99408 1.23034 0.92009 1.01601 1.03193 1.23077 0.98778 0.95998 1.02979 0.88459 0.92173 0.92161 0.82982 0.91981 0.91146 0.93900 0.94957 0.93454 0.95940 0.93341 0.96960 0.89232 0.93641 0.91162 0.87120 0.88491 0.88342 0.89005 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.25 8.50 -39.24 -0.33 -4.58 16 3 C 0.47 6.65 7.31 36.01 0.26 6.91 16 4 O -0.49 -8.45 16.18 -18.75 -0.30 -8.76 16 5 C 0.13 1.83 2.73 -68.86 -0.19 1.64 16 6 H 0.11 1.44 7.19 -51.93 -0.37 1.06 16 7 N -0.67 -10.68 5.54 -100.95 -0.56 -11.24 16 8 C 0.10 1.72 2.47 -67.72 -0.17 1.55 16 9 C -0.09 -1.78 5.30 -26.73 -0.14 -1.92 16 10 C -0.11 -2.18 5.41 -26.73 -0.14 -2.33 16 11 C 0.04 1.01 2.59 -91.77 -0.24 0.77 16 12 C -0.50 -12.99 6.61 -34.44 -0.23 -13.22 16 13 H 0.06 1.47 6.71 -52.49 -0.35 1.12 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 15 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 16 Si 0.88 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.10 -2.29 5.24 -26.70 -0.14 -2.43 16 21 C -0.13 -2.56 4.71 -26.70 -0.13 -2.69 16 22 C -0.18 -2.28 3.80 -90.62 -0.34 -2.63 16 23 C -0.16 -1.85 8.37 -26.69 -0.22 -2.08 16 24 C -0.17 -1.78 9.45 -26.69 -0.25 -2.03 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 28 H 0.35 5.75 8.08 -39.29 -0.32 5.43 16 29 H 0.06 1.05 7.43 -51.93 -0.39 0.66 16 30 H 0.07 1.48 6.62 -51.93 -0.34 1.13 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 38 H 0.05 0.78 4.70 -51.93 -0.24 0.54 16 39 H 0.07 1.54 7.21 -51.93 -0.37 1.16 16 40 H 0.11 1.45 7.93 -51.93 -0.41 1.04 16 41 H 0.10 1.08 8.05 -51.93 -0.42 0.67 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 1.05 6.85 -51.93 -0.36 0.70 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -28.77 338.78 -8.69 -37.46 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.25 Total: 5.70 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -0.96 Total: -15.53 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.07 Total: -35.41 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.64 Total: -13.34 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.77 -8.69 -37.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.995 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds