Wall clock time and date at job start Tue Mar 31 2020 05:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00299 * 2 1 4 4 O 1.20832 * 119.99391 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00536 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46560 * 299.99882 * 5 3 2 7 7 N 1.46905 * 109.47095 * 179.97438 * 5 3 2 8 8 C 1.46898 * 110.99865 * 155.00005 * 7 5 3 9 9 C 1.53007 * 109.46991 * 274.99746 * 8 7 5 10 10 C 1.52999 * 109.46881 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46964 * 60.00191 * 10 9 8 12 12 C 1.50703 * 109.46841 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00343 * 119.99825 * 12 11 10 14 14 C 1.37882 * 119.99600 * 299.99626 * 12 11 10 15 15 N 1.31517 * 119.99476 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00194 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46900 * 90.00111 * 16 14 12 18 18 H 1.48503 * 109.47017 * 209.99827 * 16 14 12 19 19 H 1.48496 * 109.47394 * 330.00319 * 16 14 12 20 20 C 1.52999 * 109.46958 * 299.99532 * 11 10 9 21 21 C 1.52990 * 109.47197 * 154.99652 * 8 7 5 22 22 C 1.52996 * 109.47007 * 59.99635 * 5 3 2 23 23 C 1.53002 * 117.49888 * 231.25608 * 22 5 3 24 24 C 1.53000 * 117.50107 * 299.91370 * 22 5 3 25 25 H 1.08999 * 109.47123 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47557 * 300.00275 * 1 2 3 27 27 H 1.09004 * 109.47124 * 60.00090 * 1 2 3 28 28 H 1.00895 * 111.00002 * 31.03925 * 7 5 3 29 29 H 1.09000 * 109.47102 * 34.99305 * 8 7 5 30 30 H 1.09002 * 109.46681 * 300.00236 * 9 8 7 31 31 H 1.09003 * 109.46818 * 59.99780 * 9 8 7 32 32 H 1.09000 * 109.47193 * 299.99547 * 10 9 8 33 33 H 1.08999 * 109.46643 * 179.97438 * 10 9 8 34 34 H 1.08998 * 109.47292 * 60.00005 * 11 10 9 35 35 H 0.97003 * 119.99576 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47349 * 299.99828 * 20 11 10 37 37 H 1.09003 * 109.46611 * 180.02562 * 20 11 10 38 38 H 1.09001 * 109.47730 * 300.00099 * 21 8 7 39 39 H 1.09000 * 109.47378 * 59.99821 * 21 8 7 40 40 H 1.09002 * 115.54951 * 85.58581 * 22 5 3 41 41 H 1.09000 * 117.49996 * 215.00804 * 23 22 5 42 42 H 1.08999 * 117.49664 * 0.02562 * 23 22 5 43 43 H 1.09008 * 117.49673 * 359.97438 * 24 22 5 44 44 H 1.08999 * 117.49959 * 144.99502 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8892 7 7 3.9828 2.6837 -0.0011 8 6 5.3242 2.8363 0.5780 9 6 5.2138 2.9377 2.1007 10 6 6.6110 3.0960 2.7038 11 6 7.2628 4.3663 2.1540 12 6 8.6388 4.5225 2.7485 13 1 9.5056 4.5468 2.1049 14 6 8.7909 4.6344 4.1144 15 7 9.9916 4.7712 4.6332 16 14 7.2915 4.5930 5.2276 17 1 7.0078 3.1903 5.6240 18 1 7.5538 5.4070 6.4417 19 1 6.1209 5.1488 4.5024 20 6 7.3732 4.2648 0.6313 21 6 5.9755 4.1067 0.0281 22 6 4.1128 0.5815 -1.2501 23 6 5.2058 -0.4709 -1.0531 24 6 3.7874 -0.9021 -1.4343 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.3115 3.2593 0.4847 29 1 5.9340 1.9721 0.3147 30 1 4.6038 3.8018 2.3639 31 1 4.7497 2.0325 2.4924 32 1 7.2204 2.2315 2.4405 33 1 6.5323 3.1686 3.7885 34 1 6.6533 5.2307 2.4174 35 1 10.0987 4.8495 5.5941 36 1 7.9828 3.4004 0.3680 37 1 7.8380 5.1696 0.2397 38 1 6.0541 4.0346 -1.0567 39 1 5.3656 4.9709 0.2914 40 1 4.1655 1.2002 -2.1460 41 1 5.9776 -0.5445 -1.8193 42 1 5.5351 -0.6695 -0.0332 43 1 3.1843 -1.3843 -0.6649 44 1 3.6259 -1.2595 -2.4512 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:41 Heat of formation + Delta-G solvation = -69.506432 kcal Electronic energy + Delta-G solvation = -23053.132160 eV Core-core repulsion = 19777.876836 eV Total energy + Delta-G solvation = -3275.255324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88688 -38.73366 -37.34308 -36.74441 -34.42923 -32.26384 -30.16253 -29.90553 -28.22375 -26.23811 -23.76672 -22.64424 -22.20197 -22.00630 -20.76703 -20.10477 -19.09969 -17.84628 -16.94520 -16.68822 -16.60624 -15.91345 -15.30347 -14.84054 -14.33682 -14.12898 -13.59167 -13.49922 -13.34549 -13.13395 -12.85745 -12.67985 -12.43156 -12.08037 -11.73887 -11.67127 -11.53409 -11.44686 -11.08516 -11.03374 -10.89581 -10.59754 -10.48444 -10.33125 -10.12482 -10.00067 -9.82242 -9.55410 -9.15748 -8.89497 -8.53049 -8.30387 -6.04999 -4.03186 1.96972 2.39482 3.26736 3.38576 3.40797 3.61188 4.10133 4.42690 4.50007 4.59904 4.82439 4.83560 4.88241 4.91528 5.04067 5.17576 5.24345 5.26015 5.29342 5.44021 5.56530 5.66507 5.76952 5.90495 5.98627 6.01611 6.03371 6.13557 6.13694 6.19832 6.22238 6.39953 6.52796 6.63004 6.72995 6.92323 7.01134 7.07546 7.32922 7.37163 7.55284 7.60613 7.81893 8.56426 9.00308 9.58444 11.08558 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.004308 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.386804 B = 6497.855516 C = 6921.532329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.465 3.535 4 O -0.499 6.499 5 C 0.127 3.873 6 H 0.084 0.916 7 N -0.669 5.669 8 C 0.093 3.907 9 C -0.152 4.152 10 C -0.114 4.114 11 C 0.013 3.987 12 C -0.511 4.511 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.904 5.904 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.299 1.299 19 H -0.266 1.266 20 C -0.098 4.098 21 C -0.102 4.102 22 C -0.142 4.142 23 C -0.171 4.171 24 C -0.173 4.173 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.353 0.647 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.675 -11.935 -10.876 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.307 3.693 4 O -0.386 6.386 5 C 0.016 3.984 6 H 0.101 0.899 7 N -0.303 5.303 8 C -0.016 4.016 9 C -0.191 4.191 10 C -0.152 4.152 11 C -0.006 4.006 12 C -0.549 4.549 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.227 1.227 19 H -0.191 1.191 20 C -0.136 4.136 21 C -0.141 4.141 22 C -0.161 4.161 23 C -0.208 4.208 24 C -0.210 4.210 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.175 0.825 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.611 -11.622 -11.363 23.240 hybrid contribution -1.173 -0.123 1.829 2.177 sum -17.784 -11.745 -9.534 23.347 Atomic orbital electron populations 1.23268 0.76546 1.03615 1.02555 1.86529 1.23200 1.33167 1.84032 1.23822 0.91964 0.81471 0.72013 1.90664 1.66720 1.36311 1.44870 1.20728 0.85943 0.92975 0.98741 0.89898 1.60676 1.05187 1.03817 1.60607 1.21704 0.88002 0.99995 0.91867 1.22352 0.99973 1.00328 0.96417 1.21906 0.93120 1.01441 0.98739 1.19161 0.96622 0.92691 0.92095 1.21110 0.91933 1.49553 0.92291 0.90875 1.25036 0.95456 0.94638 0.98197 1.69908 1.21633 1.50606 1.12064 0.86846 0.84061 0.77370 0.79915 1.20834 1.22659 1.19092 1.21445 0.93993 1.01036 0.97102 1.21528 0.97157 0.95917 0.99460 1.22123 1.04261 0.91161 0.98529 1.23092 0.92184 1.02348 1.03171 1.23082 0.98735 0.96133 1.03099 0.88103 0.91998 0.91857 0.82498 0.89992 0.92304 0.93788 0.92156 0.93704 0.95664 0.92776 0.92754 0.92474 0.92251 0.92529 0.86368 0.88336 0.88554 0.87824 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.69 8.51 -39.26 -0.33 -4.02 16 3 C 0.47 5.85 7.26 36.01 0.26 6.11 16 4 O -0.50 -7.50 15.40 -18.76 -0.29 -7.79 16 5 C 0.13 1.54 2.57 -68.86 -0.18 1.36 16 6 H 0.08 0.99 6.87 -51.93 -0.36 0.63 16 7 N -0.67 -9.22 5.93 -100.96 -0.60 -9.82 16 8 C 0.09 1.40 2.28 -67.72 -0.15 1.25 16 9 C -0.15 -2.57 5.16 -26.73 -0.14 -2.71 16 10 C -0.11 -2.39 4.69 -26.73 -0.13 -2.51 16 11 C 0.01 0.30 1.69 -91.77 -0.16 0.15 16 12 C -0.51 -14.23 9.14 -34.44 -0.31 -14.54 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 15 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 16 Si 0.89 22.16 24.37 -169.99 -4.14 18.02 16 17 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 18 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 19 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 20 C -0.10 -1.89 5.15 -26.71 -0.14 -2.02 16 21 C -0.10 -1.66 5.53 -26.71 -0.15 -1.81 16 22 C -0.14 -1.51 5.12 -90.62 -0.46 -1.97 16 23 C -0.17 -1.63 10.15 -26.69 -0.27 -1.90 16 24 C -0.17 -1.53 9.45 -26.70 -0.25 -1.79 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 28 H 0.35 5.16 7.19 -39.29 -0.28 4.88 16 29 H 0.08 1.22 7.62 -51.93 -0.40 0.82 16 30 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.04 0.68 7.43 -51.93 -0.39 0.29 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16 34 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 0.93 8.05 -51.93 -0.42 0.52 16 43 H 0.10 0.92 6.85 -51.92 -0.36 0.56 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -30.92 341.31 -7.96 -38.88 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.41 Total: 3.78 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -1.11 Total: -17.20 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.17 Total: -36.81 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.62 Total: -11.81 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.92 -7.96 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.625 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds