Wall clock time and date at job start Tue Mar 31 2020 05:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09005 * 112.85050 * 48.51890 * 5 3 2 7 7 C 1.53776 * 113.61980 * 179.72212 * 5 3 2 8 8 C 1.53780 * 87.08410 * 139.97809 * 7 5 3 9 9 H 1.08994 * 113.61411 * 219.93457 * 8 7 5 10 10 N 1.46899 * 113.61315 * 89.11886 * 8 7 5 11 11 C 1.46896 * 111.00129 * 155.00027 * 10 8 7 12 12 C 1.53000 * 109.47078 * 274.99684 * 11 10 8 13 13 C 1.53005 * 109.46974 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46956 * 60.00260 * 13 12 11 15 15 C 1.50706 * 109.47033 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99553 * 119.99536 * 15 14 13 17 17 C 1.37877 * 119.99865 * 300.00053 * 15 14 13 18 18 N 1.31518 * 120.00058 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99814 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47231 * 59.99958 * 19 17 15 21 21 H 1.48504 * 109.47161 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47143 * 299.99522 * 19 17 15 23 23 C 1.53000 * 109.47067 * 299.99683 * 14 13 12 24 24 C 1.52999 * 109.47007 * 154.99850 * 11 10 8 25 25 C 1.53780 * 87.07946 * 334.56775 * 8 7 5 26 26 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 27 27 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 29 29 H 1.09000 * 113.61363 * 254.53316 * 7 5 3 30 30 H 1.09002 * 113.61389 * 25.33961 * 7 5 3 31 31 H 1.00905 * 111.00087 * 278.95658 * 10 8 7 32 32 H 1.08996 * 109.47132 * 34.99602 * 11 10 8 33 33 H 1.08996 * 109.47072 * 299.99954 * 12 11 10 34 34 H 1.09003 * 109.46781 * 60.00169 * 12 11 10 35 35 H 1.08999 * 109.46832 * 300.00157 * 13 12 11 36 36 H 1.09000 * 109.46771 * 180.02562 * 13 12 11 37 37 H 1.08996 * 109.47376 * 59.99744 * 14 13 12 38 38 H 0.96998 * 119.99888 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47072 * 300.00247 * 23 14 13 40 40 H 1.09003 * 109.46781 * 180.02562 * 23 14 13 41 41 H 1.09000 * 109.47395 * 299.99794 * 24 11 10 42 42 H 1.08999 * 109.47435 * 60.00424 * 24 11 10 43 43 H 1.08996 * 113.61527 * 270.87817 * 25 8 7 44 44 H 1.08999 * 113.61274 * 139.98029 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 4.0206 0.6344 -0.7621 7 6 4.1077 2.7143 -0.0122 8 6 5.1849 2.2296 0.9724 9 1 5.4041 2.9438 1.7660 10 7 6.3950 1.7176 0.3155 11 6 7.5615 1.8277 1.2014 12 6 8.1659 3.2278 1.0771 13 6 9.3807 3.3426 2.0003 14 6 10.4254 2.2988 1.6007 15 6 11.6222 2.4124 2.5096 16 1 11.9217 1.5702 3.1157 17 6 12.3345 3.5915 2.5675 18 7 11.9699 4.6169 1.8291 19 14 13.8174 3.7324 3.6946 20 1 14.8316 2.7192 3.3074 21 1 14.4036 5.0915 3.5739 22 1 13.3955 3.4990 5.0992 23 6 9.8210 0.8988 1.7250 24 6 8.6061 0.7839 0.8012 25 6 4.1966 1.1274 1.3887 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 4.5068 3.0266 -0.9772 30 1 3.4183 3.4419 0.4160 31 1 6.2638 0.7659 0.0069 32 1 7.2524 1.6557 2.2324 33 1 8.4751 3.3998 0.0462 34 1 7.4217 3.9714 1.3623 35 1 9.0710 3.1707 3.0312 36 1 9.8110 4.3402 1.9121 37 1 10.7350 2.4707 0.5699 38 1 12.4713 5.4463 1.8695 39 1 9.5115 0.7269 2.7558 40 1 10.5656 0.1551 1.4407 41 1 8.1756 -0.2135 0.8897 42 1 8.9154 0.9560 -0.2297 43 1 3.5322 1.4209 2.2014 44 1 4.6676 0.1586 1.5547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:11 Heat of formation + Delta-G solvation = -86.134604 kcal Electronic energy + Delta-G solvation = -22215.549474 eV Core-core repulsion = 18939.573099 eV Total energy + Delta-G solvation = -3275.976375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02969 -39.20687 -37.51443 -36.51801 -33.71425 -31.75415 -29.71695 -28.87315 -27.88335 -25.86312 -25.66879 -24.06135 -21.94581 -21.23431 -20.53906 -19.11470 -18.60395 -18.03323 -17.07780 -16.59867 -16.29101 -15.47010 -15.19890 -14.58524 -14.21644 -13.97350 -13.89163 -13.36697 -13.05125 -12.93296 -12.76273 -12.57202 -12.30561 -12.18588 -11.90905 -11.39325 -11.27065 -11.08922 -10.99624 -10.84557 -10.74849 -10.67517 -10.47548 -10.41783 -10.22995 -10.10532 -9.81083 -9.30570 -8.88351 -8.63705 -8.25821 -8.18971 -5.93416 -3.99674 1.95521 2.49212 3.33895 3.38844 3.41177 4.10755 4.21028 4.34126 4.47343 4.56400 4.78845 4.83819 4.85195 4.92586 5.20291 5.35344 5.40973 5.44611 5.50979 5.52691 5.67214 5.82528 5.88704 5.93589 6.00475 6.13803 6.17799 6.37057 6.44883 6.45648 6.63968 6.74284 6.77775 6.96832 7.17801 7.27061 7.40610 7.51712 7.57195 7.59923 7.80453 8.07950 8.22208 8.52255 9.04480 9.64648 11.11997 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.050792 B = 0.002814 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.136257 B = 9949.460781 C =10201.497108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.470 3.530 4 O -0.508 6.508 5 C -0.109 4.109 6 H 0.125 0.875 7 C -0.111 4.111 8 C 0.072 3.928 9 H 0.093 0.907 10 N -0.667 5.667 11 C 0.092 3.908 12 C -0.101 4.101 13 C -0.110 4.110 14 C 0.049 3.951 15 C -0.514 4.514 16 H 0.052 0.948 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.106 4.106 24 C -0.116 4.116 25 C -0.150 4.150 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.336 0.664 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.030 0.970 36 H 0.092 0.908 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.291 -8.441 -3.380 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.395 6.395 5 C -0.128 4.128 6 H 0.143 0.857 7 C -0.149 4.149 8 C -0.039 4.039 9 H 0.111 0.889 10 N -0.297 5.297 11 C -0.017 4.017 12 C -0.140 4.140 13 C -0.148 4.148 14 C 0.030 3.970 15 C -0.552 4.552 16 H 0.070 0.930 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.144 4.144 24 C -0.154 4.154 25 C -0.189 4.189 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.155 0.845 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.110 0.890 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.323 -7.369 -3.755 21.018 hybrid contribution 0.245 -0.625 1.218 1.391 sum -19.078 -7.994 -2.537 20.840 Atomic orbital electron populations 1.23258 0.76667 1.03606 1.02484 1.86545 1.23225 1.33829 1.84026 1.23874 0.92013 0.81122 0.71658 1.90654 1.67078 1.36466 1.45306 1.22642 0.86309 1.02362 1.01495 0.85741 1.23113 0.96603 0.93213 1.01991 1.22583 0.89086 0.96321 0.95934 0.88870 1.60465 1.02158 1.26579 1.40528 1.21657 0.88861 0.97800 0.93341 1.21614 0.97724 0.93365 1.01258 1.21626 0.93262 1.04397 0.95543 1.18647 0.92663 0.88604 0.97036 1.21205 1.11551 0.98007 1.24442 0.92962 1.24965 0.97351 0.95989 0.95702 1.69870 1.39899 1.03106 1.40004 0.86726 0.83272 0.77024 0.81348 1.20377 1.21364 1.20409 1.21602 0.94820 1.00680 0.97286 1.21733 0.96659 0.95957 1.01060 1.23656 0.99450 1.01305 0.94508 0.91946 0.88170 0.91986 0.89470 0.88642 0.84455 0.94235 0.92276 0.94221 0.95162 0.88973 0.95645 0.93053 0.93597 0.93373 0.93972 0.91743 0.89400 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.65 10.57 -39.26 -0.41 -4.06 16 3 C 0.47 5.32 7.48 36.00 0.27 5.59 16 4 O -0.51 -7.03 15.65 -18.76 -0.29 -7.32 16 5 C -0.11 -1.07 4.02 -90.96 -0.37 -1.43 16 6 H 0.12 1.06 8.08 -51.93 -0.42 0.64 16 7 C -0.11 -1.21 7.21 -25.92 -0.19 -1.40 16 8 C 0.07 0.83 3.97 -66.90 -0.27 0.57 16 9 H 0.09 1.17 7.49 -51.93 -0.39 0.78 16 10 N -0.67 -8.68 6.37 -98.90 -0.63 -9.31 16 11 C 0.09 1.47 2.34 -67.72 -0.16 1.31 16 12 C -0.10 -1.93 5.42 -26.73 -0.14 -2.07 16 13 C -0.11 -2.54 4.98 -26.73 -0.13 -2.67 16 14 C 0.05 1.19 2.10 -91.77 -0.19 1.00 16 15 C -0.51 -14.01 8.56 -34.44 -0.29 -14.31 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.11 -2.13 5.15 -26.70 -0.14 -2.27 16 24 C -0.12 -1.92 5.20 -26.70 -0.14 -2.06 16 25 C -0.15 -1.45 7.15 -25.92 -0.19 -1.63 16 26 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.09 7.43 -51.93 -0.39 0.71 16 31 H 0.34 3.82 7.73 -39.29 -0.30 3.51 16 32 H 0.04 0.64 7.84 -51.93 -0.41 0.24 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.04 0.71 7.74 -51.93 -0.40 0.31 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -29.58 348.32 -9.10 -38.67 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.65 Total: 1.75 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -0.96 Total: -16.48 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.00 Total: -34.05 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.71 Total: -11.38 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.58 -9.10 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.460 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds