Wall clock time and date at job start Tue Mar 31 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00002 * 2 1 4 4 O 1.20826 * 119.99852 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99943 * 180.02562 * 3 2 1 6 6 H 1.08999 * 112.85432 * 48.80160 * 5 3 2 7 7 C 1.53787 * 113.61341 * 179.97438 * 5 3 2 8 8 C 1.53773 * 87.08248 * 139.98085 * 7 5 3 9 9 H 1.08999 * 113.61955 * 89.20109 * 8 7 5 10 10 N 1.46900 * 113.61468 * 220.01896 * 8 7 5 11 11 C 1.46898 * 111.00190 * 203.46828 * 10 8 7 12 12 C 1.52999 * 109.47548 * 275.00196 * 11 10 8 13 13 C 1.52997 * 109.47317 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 11 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48494 * 109.47178 * 209.99936 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00183 * 19 17 15 23 23 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 24 24 C 1.52997 * 109.46817 * 60.00194 * 23 14 13 25 25 C 1.53782 * 87.17244 * 334.60888 * 8 7 5 26 26 H 1.08993 * 109.47395 * 60.00254 * 1 2 3 27 27 H 1.09006 * 109.46921 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46977 * 300.00329 * 1 2 3 29 29 H 1.08998 * 113.61353 * 25.42610 * 7 5 3 30 30 H 1.09000 * 113.61156 * 254.52880 * 7 5 3 31 31 H 1.00903 * 111.00169 * 327.42383 * 10 8 7 32 32 H 1.09002 * 109.47032 * 34.99904 * 11 10 8 33 33 H 1.08996 * 109.46929 * 59.99097 * 12 11 10 34 34 H 1.09002 * 109.46716 * 299.99902 * 12 11 10 35 35 H 1.09002 * 109.47153 * 299.99641 * 13 12 11 36 36 H 1.09001 * 109.46832 * 179.97438 * 13 12 11 37 37 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 38 38 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.47662 * 180.02562 * 23 14 13 40 40 H 1.09002 * 109.47075 * 300.00932 * 23 14 13 41 41 H 1.09002 * 109.47153 * 60.00231 * 24 23 14 42 42 H 1.09001 * 109.47289 * 180.02562 * 24 23 14 43 43 H 1.08997 * 113.61599 * 139.94154 * 25 8 7 44 44 H 1.08996 * 113.61468 * 270.84198 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0233 0.6365 -0.7567 7 6 4.1077 2.7142 -0.0011 8 6 5.1813 2.2272 0.9861 9 1 6.0816 1.8497 0.5011 10 7 5.4716 3.1863 2.0603 11 6 6.8134 2.9648 2.6155 12 6 6.7472 1.8795 3.6919 13 6 8.1449 1.6483 4.2698 14 6 8.6627 2.9487 4.8878 15 6 10.0397 2.7211 5.4563 16 1 10.4993 1.7464 5.3845 17 6 10.7127 3.7573 6.0683 18 7 10.1533 4.9443 6.1553 19 14 12.4193 3.4750 6.7737 20 1 13.4387 3.7578 5.7314 21 1 12.6318 4.3794 7.9321 22 1 12.5440 2.0636 7.2181 23 6 8.7290 4.0340 3.8113 24 6 7.3313 4.2651 3.2335 25 6 4.1936 1.1224 1.3970 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.4174 3.4406 0.4277 30 1 4.5104 3.0288 -0.9639 31 1 5.3670 4.1358 1.7353 32 1 7.4878 2.6470 1.8203 33 1 6.3787 0.9530 3.2516 34 1 6.0729 2.1972 4.4872 35 1 8.8190 1.3304 3.4743 36 1 8.0976 0.8754 5.0369 37 1 7.9888 3.2665 5.6831 38 1 10.6269 5.6733 6.5855 39 1 9.0983 4.9602 4.2514 40 1 9.4030 3.7160 3.0158 41 1 6.6573 4.5830 4.0290 42 1 7.3786 5.0380 2.4663 43 1 4.6656 0.1538 1.5614 44 1 3.5269 1.4127 2.2089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:13 Heat of formation + Delta-G solvation = -87.239836 kcal Electronic energy + Delta-G solvation = -22220.851534 eV Core-core repulsion = 18944.827232 eV Total energy + Delta-G solvation = -3276.024302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96563 -39.04827 -37.51258 -36.47150 -33.83143 -31.85810 -29.74326 -28.83246 -27.94488 -25.88005 -25.49867 -23.98519 -21.72191 -21.09901 -20.41104 -19.62021 -18.54879 -17.91754 -16.94648 -16.55902 -16.28507 -15.67088 -14.98808 -14.70097 -14.60464 -14.00530 -13.59866 -13.42653 -13.06609 -12.76829 -12.61082 -12.54012 -12.21820 -11.99531 -11.59806 -11.50819 -11.32546 -11.09220 -11.05470 -10.98141 -10.73178 -10.65078 -10.53235 -10.39218 -10.20998 -10.09645 -9.70952 -9.33710 -8.84319 -8.63238 -8.29288 -8.16711 -5.93882 -3.99827 1.98740 2.49462 3.32226 3.39194 3.42402 4.17130 4.32244 4.35518 4.47482 4.64153 4.74698 4.81567 4.83831 4.90546 5.23949 5.32108 5.35236 5.50727 5.51316 5.60709 5.68004 5.82110 5.90293 5.98336 6.07583 6.15418 6.23507 6.40085 6.45741 6.47919 6.62681 6.72498 6.85843 7.00929 7.18853 7.28758 7.41606 7.54351 7.57455 7.63360 7.79799 8.08274 8.20593 8.52582 9.04677 9.64572 11.11582 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.048459 B = 0.002837 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.663813 B = 9868.271641 C =10133.707715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.507 6.507 5 C -0.114 4.114 6 H 0.123 0.877 7 C -0.123 4.123 8 C 0.065 3.935 9 H 0.077 0.923 10 N -0.675 5.675 11 C 0.091 3.909 12 C -0.099 4.099 13 C -0.109 4.109 14 C 0.048 3.952 15 C -0.512 4.512 16 H 0.053 0.947 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.105 4.105 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.341 0.659 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.025 0.975 38 H 0.259 0.741 39 H 0.092 0.908 40 H 0.031 0.969 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.930 -7.422 -13.613 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.316 3.684 4 O -0.394 6.394 5 C -0.133 4.133 6 H 0.141 0.859 7 C -0.160 4.160 8 C -0.046 4.046 9 H 0.095 0.905 10 N -0.307 5.307 11 C -0.018 4.018 12 C -0.137 4.137 13 C -0.147 4.147 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.071 0.929 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.145 4.145 24 C -0.156 4.156 25 C -0.144 4.144 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.160 0.840 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.097 0.903 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.440 -7.306 -13.050 21.496 hybrid contribution 1.233 0.254 -0.408 1.323 sum -14.207 -7.052 -13.457 20.801 Atomic orbital electron populations 1.23262 0.76574 1.03624 1.02517 1.86531 1.23274 1.33705 1.84043 1.23676 0.91817 0.81165 0.71717 1.90658 1.67034 1.36458 1.45257 1.22466 0.86920 1.01353 1.02569 0.85906 1.23251 0.98074 0.94542 1.00182 1.22949 0.95957 0.94490 0.91209 0.90527 1.60646 1.30134 1.06876 1.33002 1.21693 0.86570 0.97413 0.96123 1.21508 0.98389 0.96365 0.97479 1.21635 0.93926 1.00301 0.98856 1.18650 0.95600 0.89569 0.93170 1.21259 1.01377 0.96162 1.36191 0.92877 1.24971 0.97728 0.95314 0.96057 1.69873 1.37608 1.01286 1.44252 0.86662 0.84998 0.78026 0.78700 1.20821 1.21313 1.20005 1.21584 0.91636 1.03735 0.97551 1.21813 1.00197 0.94318 0.99266 1.23086 0.97889 0.99908 0.93489 0.92022 0.88148 0.91858 0.87863 0.90653 0.83971 0.94419 0.93953 0.92157 0.93777 0.93483 0.95652 0.93133 0.88942 0.95049 0.92052 0.94255 0.90327 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.69 10.57 -39.25 -0.41 -4.10 16 3 C 0.47 5.40 7.49 36.00 0.27 5.67 16 4 O -0.51 -7.11 15.65 -18.75 -0.29 -7.40 16 5 C -0.11 -1.08 4.26 -90.87 -0.39 -1.47 16 6 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 7 C -0.12 -1.23 6.99 -25.92 -0.18 -1.41 16 8 C 0.06 0.73 3.94 -66.90 -0.26 0.47 16 9 H 0.08 0.85 7.49 -51.93 -0.39 0.46 16 10 N -0.68 -9.27 6.36 -98.89 -0.63 -9.90 16 11 C 0.09 1.49 2.49 -67.71 -0.17 1.32 16 12 C -0.10 -1.75 5.43 -26.73 -0.15 -1.89 16 13 C -0.11 -2.26 5.14 -26.73 -0.14 -2.39 16 14 C 0.05 1.19 2.10 -91.77 -0.19 1.00 16 15 C -0.51 -14.03 8.56 -34.44 -0.29 -14.33 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.11 -2.46 4.98 -26.73 -0.13 -2.59 16 24 C -0.12 -2.21 5.20 -26.73 -0.14 -2.35 16 25 C -0.11 -1.13 7.32 -25.83 -0.19 -1.31 16 26 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.10 1.19 7.43 -51.93 -0.39 0.81 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.34 4.40 8.18 -39.29 -0.32 4.07 16 32 H 0.04 0.63 7.47 -51.93 -0.39 0.24 16 33 H 0.04 0.67 7.94 -51.93 -0.41 0.26 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -29.89 349.03 -9.13 -39.02 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.67 Total: 2.04 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -0.99 Total: -16.41 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.00 Total: -34.70 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -0.71 Total: -11.51 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.89 -9.13 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.222 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds