Wall clock time and date at job start Tue Mar 31 2020 05:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99941 * 2 1 4 4 O 1.20827 * 120.00004 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99835 * 180.02562 * 3 2 1 6 6 H 1.08993 * 110.33570 * 57.75003 * 5 3 2 7 7 C 1.54912 * 110.37335 * 295.37609 * 5 3 2 8 8 C 1.55144 * 101.65226 * 204.10343 * 7 5 3 9 9 C 1.54322 * 103.01738 * 35.65056 * 8 7 5 10 10 N 1.47440 * 107.23705 * 337.72111 * 9 8 7 11 11 C 1.46904 * 110.99726 * 236.74297 * 10 9 8 12 12 C 1.53007 * 109.46726 * 296.75043 * 11 10 9 13 13 C 1.52997 * 109.46617 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47730 * 60.00174 * 13 12 11 15 15 C 1.50691 * 109.47413 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00141 * 119.99655 * 15 14 13 17 17 C 1.37879 * 120.00279 * 299.99624 * 15 14 13 18 18 N 1.31520 * 119.99714 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00393 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47287 * 59.99875 * 19 17 15 21 21 H 1.48504 * 109.46778 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47010 * 299.99727 * 19 17 15 23 23 C 1.52998 * 109.46818 * 299.99771 * 14 13 12 24 24 C 1.53001 * 109.47154 * 60.00002 * 23 14 13 25 25 H 1.08996 * 109.47086 * 59.99930 * 1 2 3 26 26 H 1.09004 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47176 * 299.99712 * 1 2 3 28 28 H 1.09001 * 110.98793 * 86.01096 * 7 5 3 29 29 H 1.08997 * 110.98760 * 322.19180 * 7 5 3 30 30 H 1.09002 * 110.70357 * 277.27240 * 8 7 5 31 31 H 1.08997 * 110.70516 * 154.03759 * 8 7 5 32 32 H 1.08999 * 109.88510 * 97.12742 * 9 8 7 33 33 H 1.08999 * 109.88515 * 218.14613 * 9 8 7 34 34 H 1.08997 * 109.47310 * 56.74756 * 11 10 9 35 35 H 1.08997 * 109.46992 * 299.99908 * 12 11 10 36 36 H 1.08996 * 109.47339 * 60.00285 * 12 11 10 37 37 H 1.09006 * 109.47156 * 299.99221 * 13 12 11 38 38 H 1.09002 * 109.46858 * 179.97438 * 13 12 11 39 39 H 1.08994 * 109.47157 * 59.99167 * 14 13 12 40 40 H 0.96990 * 120.00189 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.47353 * 299.99903 * 23 14 13 42 42 H 1.09002 * 109.47620 * 180.02562 * 23 14 13 43 43 H 1.09002 * 109.47230 * 179.97438 * 24 23 14 44 44 H 1.08994 * 109.47583 * 60.00136 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9728 0.7502 -0.8652 7 6 4.1380 0.6813 1.3112 8 6 5.5118 1.3958 1.4058 9 6 5.2125 2.8007 0.8417 10 7 4.0077 2.6859 -0.0003 11 6 4.2741 3.1543 -1.3670 12 6 4.6288 4.6424 -1.3359 13 6 4.9056 5.1303 -2.7593 14 6 3.6593 4.9211 -3.6218 15 6 3.9318 5.4023 -5.0235 16 1 3.8595 4.7155 -5.8539 17 6 4.2734 6.7194 -5.2461 18 7 4.3619 7.5557 -4.2349 19 14 4.6105 7.3162 -6.9838 20 1 3.4005 7.1131 -7.8204 21 1 4.9551 8.7603 -6.9531 22 1 5.7445 6.5493 -7.5593 23 6 3.3046 3.4331 -3.6528 24 6 3.0277 2.9450 -2.2294 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.2641 -0.3983 1.2288 29 1 3.5063 0.9352 2.1624 30 1 6.2549 0.8849 0.7935 31 1 5.8427 1.4591 2.4424 32 1 5.0282 3.4971 1.6597 33 1 6.0549 3.1470 0.2429 34 1 5.1067 2.5911 -1.7883 35 1 3.7962 5.2056 -0.9146 36 1 5.5165 4.7916 -0.7213 37 1 5.7382 4.5672 -3.1811 38 1 5.1578 6.1906 -2.7373 39 1 2.8269 5.4842 -3.2000 40 1 4.6026 8.4821 -4.3914 41 1 4.1371 2.8698 -4.0745 42 1 2.4170 3.2838 -4.2675 43 1 2.7746 1.8850 -2.2515 44 1 2.1953 3.5082 -1.8076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:13 Heat of formation + Delta-G solvation = -92.887192 kcal Electronic energy + Delta-G solvation = -23534.439866 eV Core-core repulsion = 20258.170676 eV Total energy + Delta-G solvation = -3276.269190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.69978 -39.00984 -36.74146 -36.15921 -33.06232 -31.20339 -30.52470 -29.29355 -27.92819 -27.42354 -24.45676 -23.11552 -22.07956 -21.07331 -20.32929 -19.63395 -18.75557 -17.55952 -16.64425 -16.57782 -16.16595 -15.75688 -14.84477 -14.58140 -14.05385 -13.73662 -13.51307 -13.10238 -13.08660 -12.92419 -12.68864 -12.45526 -12.19040 -11.90287 -11.63094 -11.53841 -11.15815 -11.09124 -10.97650 -10.88316 -10.73835 -10.62908 -10.49906 -10.29135 -10.17211 -9.94910 -9.72580 -9.28261 -8.82268 -8.58751 -8.22704 -8.17012 -5.90798 -3.96906 2.39758 2.63724 3.35615 3.40233 3.42847 4.08275 4.44191 4.49211 4.52196 4.81506 5.01798 5.07269 5.10632 5.16129 5.33596 5.37869 5.46215 5.47284 5.50822 5.60708 5.69269 5.74620 5.88906 5.93143 6.11666 6.19164 6.35176 6.42030 6.46860 6.51237 6.59682 6.74628 6.86235 7.03380 7.09137 7.20253 7.31031 7.42659 7.61215 7.82118 7.98461 8.11763 8.23627 8.55051 9.07110 9.67116 11.14726 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024000 B = 0.004530 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.408866 B = 6179.253635 C = 6958.747227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.463 3.537 4 O -0.473 6.473 5 C 0.083 3.917 6 H 0.090 0.910 7 C -0.114 4.114 8 C -0.141 4.141 9 C 0.045 3.955 10 N -0.510 5.510 11 C 0.088 3.912 12 C -0.105 4.105 13 C -0.107 4.107 14 C 0.049 3.951 15 C -0.513 4.513 16 H 0.052 0.948 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.106 4.106 24 C -0.108 4.108 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.026 0.974 40 H 0.259 0.741 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.030 0.970 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 -15.437 12.096 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.303 3.697 4 O -0.356 6.356 5 C -0.028 4.028 6 H 0.108 0.892 7 C -0.153 4.153 8 C -0.180 4.180 9 C -0.083 4.083 10 N -0.235 5.235 11 C -0.019 4.019 12 C -0.143 4.143 13 C -0.145 4.145 14 C 0.031 3.969 15 C -0.551 4.551 16 H 0.070 0.930 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.144 4.144 24 C -0.146 4.146 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.112 0.888 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.077 -14.595 12.329 19.136 hybrid contribution 0.565 -0.074 -1.355 1.470 sum -0.512 -14.669 10.974 18.327 Atomic orbital electron populations 1.23200 0.76706 1.03226 1.02584 1.86475 1.23111 1.34000 1.84893 1.23509 0.91605 0.81313 0.73238 1.90685 1.66355 1.35999 1.42561 1.21992 0.88210 0.92169 1.00380 0.89248 1.22653 0.96614 1.00232 0.95767 1.22827 0.96731 0.96286 1.02109 1.22830 0.91506 0.96638 0.97293 1.63140 1.31612 1.15661 1.13070 1.21953 0.96869 0.97584 0.85461 1.21681 1.00016 0.92711 0.99863 1.21608 0.99056 1.03018 0.90858 1.18637 0.94055 0.89259 0.94955 1.21204 1.46481 0.94608 0.92789 0.92970 1.24962 0.95550 0.96877 0.96575 1.69869 1.48751 1.04404 1.29891 0.86722 0.78662 0.77589 0.85372 1.20389 1.21360 1.20418 1.21621 0.99655 0.99975 0.93197 1.21719 0.97631 0.98526 0.96699 0.91892 0.88438 0.92105 0.89717 0.90312 0.91048 0.90294 0.90255 0.91642 0.94526 0.91862 0.93949 0.95089 0.88809 0.95562 0.93077 0.93759 0.93441 0.95097 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.69 10.57 -39.25 -0.41 -5.10 16 3 C 0.46 6.97 5.83 36.01 0.21 7.18 16 4 O -0.47 -8.69 14.39 -18.75 -0.27 -8.96 16 5 C 0.08 1.11 2.33 -67.33 -0.16 0.96 16 6 H 0.09 1.16 7.42 -51.93 -0.39 0.78 16 7 C -0.11 -1.15 6.48 -24.59 -0.16 -1.31 16 8 C -0.14 -1.34 6.94 -24.90 -0.17 -1.51 16 9 C 0.04 0.56 6.15 -2.84 -0.02 0.55 16 10 N -0.51 -7.96 4.26 -216.83 -0.92 -8.88 16 11 C 0.09 1.59 1.50 -67.71 -0.10 1.48 16 12 C -0.10 -2.10 5.13 -26.73 -0.14 -2.24 16 13 C -0.11 -2.55 4.98 -26.73 -0.13 -2.68 16 14 C 0.05 1.26 2.10 -91.78 -0.19 1.07 16 15 C -0.51 -14.35 8.56 -34.44 -0.29 -14.65 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.80 11.32 55.43 0.63 -25.17 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.11 -2.33 5.14 -26.73 -0.14 -2.46 16 24 C -0.11 -2.10 3.95 -26.73 -0.11 -2.21 16 25 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.84 6.57 -51.93 -0.34 0.50 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.04 0.77 6.70 -51.93 -0.35 0.42 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.03 0.55 6.05 -51.93 -0.31 0.23 16 44 H 0.07 1.64 7.12 -51.93 -0.37 1.27 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -31.00 336.21 -8.89 -39.89 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.53 Total: -0.64 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.43 Total: -12.77 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.30 Total: -34.05 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.68 Total: -14.06 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.00 -8.89 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.997 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds