Wall clock time and date at job start Tue Mar 31 2020 05:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99753 * 2 1 4 4 C 1.53002 * 109.46989 * 124.99733 * 3 2 1 5 5 H 1.09000 * 109.46495 * 55.00094 * 4 3 2 6 6 N 1.46896 * 109.47175 * 295.00408 * 4 3 2 7 7 C 1.46905 * 110.99755 * 155.00148 * 6 4 3 8 8 C 1.52995 * 109.46922 * 274.99590 * 7 6 4 9 9 C 1.52999 * 109.47241 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47273 * 59.99967 * 9 8 7 11 11 C 1.50700 * 109.47308 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00152 * 119.99735 * 11 10 9 13 13 C 1.37883 * 119.99996 * 300.00310 * 11 10 9 14 14 N 1.31516 * 119.99825 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00106 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47224 * 59.99484 * 15 13 11 17 17 H 1.48497 * 109.47453 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47138 * 299.99707 * 15 13 11 19 19 C 1.52995 * 109.47013 * 300.00172 * 10 9 8 20 20 C 1.52997 * 109.47224 * 154.99784 * 7 6 4 21 21 C 1.50697 * 109.46796 * 174.99926 * 4 3 2 22 22 O 1.20833 * 119.99747 * 120.00770 * 21 4 3 23 23 O 1.34230 * 120.00262 * 299.72392 * 21 4 3 24 24 C 1.45202 * 116.99836 * 180.27336 * 23 21 4 25 25 H 1.07999 * 120.00238 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99507 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00238 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46875 * 5.00245 * 3 2 1 29 29 H 1.08997 * 109.47405 * 245.00188 * 3 2 1 30 30 H 1.00902 * 111.00075 * 278.94996 * 6 4 3 31 31 H 1.08999 * 109.47433 * 34.99398 * 7 6 4 32 32 H 1.09008 * 109.47463 * 300.00315 * 8 7 6 33 33 H 1.09005 * 109.47326 * 60.00017 * 8 7 6 34 34 H 1.08999 * 109.47063 * 299.99777 * 9 8 7 35 35 H 1.09007 * 109.47105 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.47231 * 59.99912 * 10 9 8 37 37 H 0.96994 * 119.99762 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47266 * 299.99528 * 19 10 9 39 39 H 1.09005 * 109.47326 * 180.02562 * 19 10 9 40 40 H 1.09000 * 109.46965 * 299.99903 * 20 7 6 41 41 H 1.09007 * 109.47313 * 59.99781 * 20 7 6 42 42 H 1.09001 * 109.46882 * 180.02562 * 24 23 21 43 43 H 1.08998 * 109.47630 * 300.00638 * 24 23 21 44 44 H 1.09004 * 109.46770 * 60.01042 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 1 3.6826 0.4574 1.1403 6 7 2.2764 1.3223 2.4396 7 6 3.0818 0.7664 3.5352 8 6 2.9671 -0.7593 3.5292 9 6 3.8054 -1.3383 4.6706 10 6 3.2943 -0.7937 6.0059 11 6 4.1203 -1.3636 7.1301 12 1 4.6717 -0.7036 7.7833 13 6 4.1723 -2.7276 7.3246 14 7 3.5006 -3.5313 6.5294 15 14 5.1957 -3.4339 8.7186 16 1 4.6990 -2.9053 10.0144 17 1 5.0846 -4.9147 8.7133 18 1 6.6168 -3.0431 8.5366 19 6 3.4090 0.7319 6.0119 20 6 2.5713 1.3109 4.8707 21 6 3.8746 2.5827 1.1121 22 8 3.8443 3.3821 2.0176 23 8 4.6605 2.8048 0.0468 24 6 5.4460 4.0259 0.0503 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9353 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6213 1.4028 -0.9313 30 1 1.9431 2.2467 2.6689 31 1 4.1249 1.0527 3.4009 32 1 1.9239 -1.0458 3.6634 33 1 3.3308 -1.1473 2.5777 34 1 4.8485 -1.0519 4.5368 35 1 3.7239 -2.4253 4.6660 36 1 2.2511 -1.0801 6.1397 37 1 3.5369 -4.4908 6.6664 38 1 4.4522 1.0184 5.8781 39 1 3.0453 1.1199 6.9634 40 1 2.6530 2.3978 4.8750 41 1 1.5281 1.0245 5.0050 42 1 6.0342 4.0822 -0.8656 43 1 4.7796 4.8866 0.1073 44 1 6.1138 4.0258 0.9119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:33 Heat of formation + Delta-G solvation = -88.061552 kcal Electronic energy + Delta-G solvation = -22936.013981 eV Core-core repulsion = 19659.954047 eV Total energy + Delta-G solvation = -3276.059934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78008 -38.28582 -36.68476 -35.95757 -33.79329 -32.20385 -30.09268 -29.69665 -28.00021 -27.17870 -24.44646 -23.77573 -21.76771 -20.82124 -20.20503 -19.79984 -18.64349 -17.77338 -16.98356 -16.48338 -16.26655 -15.37567 -15.20066 -14.55935 -14.15516 -13.97544 -13.73921 -13.43550 -13.10610 -12.90577 -12.71242 -12.63377 -12.15177 -12.04451 -11.54255 -11.43879 -11.19851 -11.09443 -10.98046 -10.95647 -10.66345 -10.59792 -10.45380 -10.37215 -10.11342 -9.81517 -9.30017 -9.20244 -8.85757 -8.65385 -8.36091 -8.23596 -5.92177 -3.98024 2.03196 2.40577 2.67728 3.35002 3.39534 3.42427 4.13870 4.48673 4.55476 4.91136 4.92533 4.98105 5.00488 5.20664 5.31088 5.35758 5.36968 5.47200 5.55489 5.62740 5.80625 5.94764 6.02900 6.19063 6.21695 6.34200 6.43064 6.48919 6.61136 6.71580 6.74906 6.82681 6.88147 6.97118 7.15615 7.23913 7.37527 7.47588 7.59067 7.63098 7.81550 8.09771 8.22763 8.54198 9.05890 9.66088 11.13299 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019952 B = 0.004223 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.030919 B = 6629.479373 C = 7355.064640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 C -0.075 4.075 4 C 0.101 3.899 5 H 0.119 0.881 6 N -0.650 5.650 7 C 0.090 3.910 8 C -0.101 4.101 9 C -0.109 4.109 10 C 0.049 3.951 11 C -0.513 4.513 12 H 0.052 0.948 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.279 1.279 19 C -0.105 4.105 20 C -0.114 4.114 21 C 0.432 3.568 22 O -0.506 6.506 23 O -0.360 6.360 24 C 0.033 3.967 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.347 0.653 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.093 0.907 36 H 0.026 0.974 37 H 0.259 0.741 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 10.644 -15.885 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.149 4.149 3 C -0.112 4.112 4 C -0.012 4.012 5 H 0.137 0.863 6 N -0.282 5.282 7 C -0.018 4.018 8 C -0.139 4.139 9 C -0.148 4.148 10 C 0.031 3.969 11 C -0.551 4.551 12 H 0.070 0.930 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.144 4.144 20 C -0.152 4.152 21 C 0.272 3.728 22 O -0.393 6.393 23 O -0.275 6.275 24 C -0.061 4.061 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.168 0.832 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.111 0.889 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.079 0.921 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.711 10.136 -15.771 18.825 hybrid contribution 1.403 0.561 1.059 1.845 sum -0.308 10.697 -14.712 18.193 Atomic orbital electron populations 1.23695 0.95857 1.01437 1.01563 1.22562 0.95867 0.97279 0.99175 1.20685 0.97544 0.97223 0.95793 1.21660 0.93248 0.92561 0.93772 0.86336 1.61055 1.36413 1.28851 1.01838 1.21689 0.94153 0.96554 0.89419 1.21633 1.01496 0.92107 0.98652 1.21624 0.96023 1.03401 0.93739 1.18646 0.96906 0.88398 0.92968 1.21214 1.28921 0.91597 1.13402 0.92976 1.24954 0.95618 0.97227 0.96136 1.69867 1.41935 1.03367 1.37752 0.86728 0.80852 0.77834 0.82971 1.20381 1.21352 1.20426 1.21583 0.97830 0.99511 0.95428 1.21671 1.00715 0.98247 0.94551 1.25582 0.78365 0.89371 0.79463 1.90675 1.63902 1.46862 1.37875 1.86553 1.53828 1.42968 1.44152 1.23249 0.94756 0.84724 1.03380 0.89030 0.88671 0.87289 0.91106 0.89781 0.83242 0.94460 0.92026 0.94347 0.95233 0.88884 0.95572 0.93092 0.93696 0.93338 0.93608 0.91782 0.88234 0.92077 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.98 14.32 29.01 0.42 -1.57 16 2 C -0.13 -1.41 9.25 -36.02 -0.33 -1.74 16 3 C -0.07 -0.76 5.30 -27.88 -0.15 -0.91 16 4 C 0.10 1.26 2.30 -68.87 -0.16 1.10 16 5 H 0.12 1.50 7.11 -51.93 -0.37 1.14 16 6 N -0.65 -9.44 5.62 -100.96 -0.57 -10.01 16 7 C 0.09 1.57 2.14 -67.71 -0.14 1.43 16 8 C -0.10 -1.94 5.41 -26.73 -0.14 -2.09 16 9 C -0.11 -2.57 4.98 -26.73 -0.13 -2.70 16 10 C 0.05 1.23 2.10 -91.78 -0.19 1.04 16 11 C -0.51 -14.26 8.56 -34.44 -0.29 -14.55 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 14 N -0.89 -25.47 11.32 55.43 0.63 -24.85 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.11 -2.26 5.14 -26.76 -0.14 -2.40 16 20 C -0.11 -2.09 5.19 -26.76 -0.14 -2.23 16 21 C 0.43 5.80 6.95 36.00 0.25 6.05 16 22 O -0.51 -8.13 15.40 -18.76 -0.29 -8.42 16 23 O -0.36 -4.20 10.38 -39.26 -0.41 -4.60 16 24 C 0.03 0.30 10.56 101.05 1.07 1.36 16 25 H 0.09 0.90 7.84 -52.49 -0.41 0.49 16 26 H 0.09 0.95 8.06 -52.49 -0.42 0.53 16 27 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 29 H 0.08 0.74 8.00 -51.93 -0.42 0.33 16 30 H 0.35 5.05 7.36 -39.29 -0.29 4.77 16 31 H 0.04 0.70 7.64 -51.93 -0.40 0.30 16 32 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 33 H 0.04 0.68 7.43 -51.93 -0.39 0.29 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 41 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 44 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 LS Contribution 353.88 15.07 5.33 5.33 Total: -1.00 -29.67 353.88 -8.11 -37.78 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.60 Total: 3.89 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.19 Total: -15.59 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.06 Total: -34.85 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.70 Total: -13.02 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.67 -8.11 -37.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.277 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds