Wall clock time and date at job start Tue Mar 31 2020 05:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99689 * 2 1 4 4 C 1.53004 * 109.46729 * 123.28209 * 3 2 1 5 5 H 1.09001 * 109.46713 * 176.74090 * 4 3 2 6 6 N 1.46890 * 109.47420 * 296.74838 * 4 3 2 7 7 C 1.46907 * 111.00034 * 274.86205 * 6 4 3 8 8 C 1.53006 * 109.46843 * 274.20243 * 7 6 4 9 9 C 1.53002 * 109.46887 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47166 * 60.00032 * 9 8 7 11 11 C 1.50696 * 109.47165 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00140 * 120.00247 * 11 10 9 13 13 C 1.37880 * 119.99804 * 299.99968 * 11 10 9 14 14 N 1.31513 * 119.99872 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99837 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46849 * 90.00428 * 15 13 11 17 17 H 1.48510 * 109.46857 * 210.00100 * 15 13 11 18 18 H 1.48503 * 109.47307 * 329.99883 * 15 13 11 19 19 C 1.53005 * 109.46734 * 300.00063 * 10 9 8 20 20 C 1.52994 * 109.47431 * 154.19919 * 7 6 4 21 21 C 1.50704 * 109.47156 * 56.74782 * 4 3 2 22 22 O 1.20822 * 119.99910 * 240.00094 * 21 4 3 23 23 O 1.34230 * 120.00059 * 59.99665 * 21 4 3 24 24 C 1.45194 * 117.00238 * 180.02562 * 23 21 4 25 25 H 1.07994 * 120.00209 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99918 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00209 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47258 * 3.28941 * 3 2 1 29 29 H 1.09001 * 109.46791 * 243.28221 * 3 2 1 30 30 H 1.00901 * 111.00150 * 38.81199 * 6 4 3 31 31 H 1.08999 * 109.46913 * 34.19599 * 7 6 4 32 32 H 1.08999 * 109.46840 * 299.99401 * 8 7 6 33 33 H 1.08995 * 109.47068 * 59.99741 * 8 7 6 34 34 H 1.08999 * 109.46864 * 299.99995 * 9 8 7 35 35 H 1.09001 * 109.46870 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.46830 * 59.99354 * 10 9 8 37 37 H 0.97004 * 119.99687 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.46884 * 299.99259 * 19 10 9 39 39 H 1.09006 * 109.46441 * 180.02562 * 19 10 9 40 40 H 1.08997 * 109.47473 * 300.00458 * 20 7 6 41 41 H 1.09007 * 109.46777 * 60.00255 * 20 7 6 42 42 H 1.08998 * 109.47521 * 59.99788 * 24 23 21 43 43 H 1.08996 * 109.47383 * 180.02562 * 24 23 21 44 44 H 1.09007 * 109.46832 * 299.99640 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0040 1.3510 1.2060 5 1 3.5907 2.2691 1.1744 6 7 2.2146 1.3167 2.4442 7 6 1.7704 2.6648 2.8230 8 6 2.8662 3.3518 3.6405 9 6 2.4039 4.7561 4.0344 10 6 1.1284 4.6564 4.8735 11 6 0.6727 6.0396 5.2611 12 1 -0.3010 6.3928 4.9552 13 6 1.4988 6.8540 6.0062 14 7 1.1009 8.0609 6.3448 15 14 3.1826 6.2427 6.5359 16 1 4.1855 6.5936 5.4985 17 1 3.5582 6.8804 7.8234 18 1 3.1425 4.7681 6.7071 19 6 0.0327 3.9693 4.0561 20 6 0.4951 2.5646 3.6622 21 6 3.9292 0.1621 1.1669 22 8 3.9307 -0.6323 2.0772 23 8 4.7516 -0.0143 0.1208 24 6 5.6145 -1.1816 0.1502 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3566 2.1328 0.0590 29 1 2.6452 1.3888 -0.9180 30 1 1.4296 0.6890 2.3553 31 1 1.5689 3.2469 1.9239 32 1 3.0678 2.7697 4.5397 33 1 3.7748 3.4232 3.0425 34 1 2.2026 5.3380 3.1350 35 1 3.1844 5.2454 4.6172 36 1 1.3297 4.0744 5.7729 37 1 1.6820 8.6338 6.8694 38 1 -0.1687 4.5513 3.1567 39 1 -0.8762 3.8987 4.6538 40 1 -0.2855 2.0750 3.0800 41 1 0.6967 1.9824 4.5615 42 1 5.0044 -2.0835 0.1984 43 1 6.2262 -1.2041 -0.7517 44 1 6.2614 -1.1333 1.0263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:36 Heat of formation + Delta-G solvation = -76.713879 kcal Electronic energy + Delta-G solvation = -22995.960185 eV Core-core repulsion = 19720.392323 eV Total energy + Delta-G solvation = -3275.567862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69655 -38.69375 -36.82149 -36.14882 -33.82864 -32.25388 -30.48558 -30.09323 -28.23529 -27.40674 -24.74452 -23.60539 -22.23799 -21.11922 -20.64485 -19.59770 -18.97237 -17.48874 -16.94670 -16.60633 -16.50492 -15.67810 -15.45919 -14.87668 -14.26664 -14.10103 -13.79468 -13.59390 -13.32712 -13.13907 -13.08576 -12.73228 -12.59890 -12.17721 -11.91559 -11.73511 -11.51759 -11.39240 -11.22868 -10.96953 -10.91965 -10.64506 -10.48341 -10.31093 -10.02017 -9.80538 -9.67946 -9.50611 -9.00333 -8.87426 -8.50303 -8.36799 -6.03416 -4.01927 1.96287 2.20661 2.49192 3.30806 3.42650 3.45690 4.17804 4.45565 4.45590 4.64037 4.70855 4.89282 4.93049 4.97209 5.11069 5.23351 5.25157 5.29795 5.31301 5.37343 5.55635 5.65964 5.70365 5.93750 6.03851 6.11077 6.19156 6.24112 6.26770 6.30272 6.35454 6.44055 6.57272 6.66982 6.71761 6.93265 7.02264 7.12565 7.29503 7.41216 7.61987 7.75901 7.83251 8.57063 9.00990 9.60128 11.10004 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.004364 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.496414 B = 6413.961091 C = 7224.594080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 C -0.121 4.121 4 C 0.103 3.897 5 H 0.119 0.881 6 N -0.668 5.668 7 C 0.095 3.905 8 C -0.109 4.109 9 C -0.119 4.119 10 C 0.013 3.987 11 C -0.512 4.512 12 H 0.072 0.928 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.887 3.113 16 H -0.280 1.280 17 H -0.299 1.299 18 H -0.264 1.264 19 C -0.095 4.095 20 C -0.119 4.119 21 C 0.465 3.535 22 O -0.485 6.485 23 O -0.364 6.364 24 C 0.036 3.964 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.349 0.651 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.432 -17.069 -15.379 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.181 4.181 3 C -0.160 4.160 4 C -0.009 4.009 5 H 0.136 0.864 6 N -0.300 5.300 7 C -0.013 4.013 8 C -0.147 4.147 9 C -0.157 4.157 10 C -0.005 4.005 11 C -0.550 4.550 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.543 5.543 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.227 1.227 18 H -0.189 1.189 19 C -0.133 4.133 20 C -0.157 4.157 21 C 0.305 3.695 22 O -0.370 6.370 23 O -0.281 6.281 24 C -0.058 4.058 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.169 0.831 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.043 -17.176 -14.580 23.087 hybrid contribution 0.502 -0.256 -0.289 0.633 sum 5.545 -17.432 -14.869 23.573 Atomic orbital electron populations 1.23937 0.95732 1.02257 0.99756 1.22867 0.96294 0.97960 1.01014 1.21455 0.99063 0.96676 0.98759 1.21088 0.93967 0.95195 0.90670 0.86358 1.60140 1.28066 1.11383 1.30446 1.21596 0.95517 0.86867 0.97301 1.21642 0.96298 0.97228 0.99534 1.21976 0.99467 0.93798 1.00477 1.19157 0.90944 0.96657 0.93781 1.21094 1.03727 0.97093 1.33102 0.90986 1.25030 0.98162 0.94662 0.95435 1.69908 1.37325 1.08273 1.38769 0.86852 0.84832 0.79599 0.76990 1.20718 1.22707 1.18867 1.21407 0.99239 0.92771 0.99853 1.21772 0.94802 0.99491 0.99644 1.23756 0.79229 0.87085 0.79416 1.90659 1.65816 1.44071 1.36408 1.86501 1.49837 1.46558 1.45226 1.23211 0.93057 0.86184 1.03321 0.88151 0.88250 0.87694 0.89599 0.89131 0.83050 0.93464 0.91753 0.93642 0.92383 0.93494 0.95494 0.92775 0.92842 0.92459 0.93197 0.91453 0.92146 0.88288 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 14.30 29.01 0.41 -1.13 16 2 C -0.16 -1.53 7.72 -36.02 -0.28 -1.81 16 3 C -0.12 -1.13 5.45 -27.88 -0.15 -1.28 16 4 C 0.10 1.20 2.66 -68.87 -0.18 1.02 16 5 H 0.12 1.34 7.17 -51.93 -0.37 0.97 16 6 N -0.67 -9.08 5.55 -100.95 -0.56 -9.64 16 7 C 0.10 1.42 2.29 -67.71 -0.16 1.27 16 8 C -0.11 -1.92 5.42 -26.73 -0.14 -2.06 16 9 C -0.12 -2.51 4.69 -26.73 -0.13 -2.64 16 10 C 0.01 0.31 1.69 -91.77 -0.16 0.15 16 11 C -0.51 -14.26 9.14 -34.44 -0.31 -14.57 16 12 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 13 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 14 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 15 Si 0.89 22.27 24.37 -169.99 -4.14 18.13 16 16 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 17 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 18 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 19 C -0.09 -1.80 5.14 -26.71 -0.14 -1.93 16 20 C -0.12 -1.86 5.19 -26.71 -0.14 -2.00 16 21 C 0.46 5.96 6.17 36.01 0.22 6.19 16 22 O -0.49 -7.69 16.18 -18.75 -0.30 -7.99 16 23 O -0.36 -3.98 10.49 -39.26 -0.41 -4.39 16 24 C 0.04 0.30 10.56 101.05 1.07 1.36 16 25 H 0.10 0.83 7.84 -52.49 -0.41 0.42 16 26 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 27 H 0.11 1.04 7.56 -52.49 -0.40 0.64 16 28 H 0.09 0.78 7.06 -51.93 -0.37 0.42 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.35 4.51 6.97 -39.29 -0.27 4.24 16 31 H 0.05 0.67 7.11 -51.93 -0.37 0.30 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.04 0.73 7.49 -51.93 -0.39 0.34 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 36 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -31.79 344.33 -7.01 -38.80 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.37 Total: 2.51 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -0.18 Total: -15.56 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.21 Total: -36.68 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.72 Total: -12.38 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.79 -7.01 -38.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.915 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds