Wall clock time and date at job start Tue Mar 31 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00281 * 2 1 4 4 O 1.20825 * 119.99693 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00089 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.76248 * 298.25371 * 5 3 2 7 7 C 1.55138 * 110.70648 * 61.45149 * 5 3 2 8 8 C 1.54908 * 101.68619 * 154.02039 * 7 5 3 9 9 N 1.47887 * 104.77420 * 322.97931 * 8 7 5 10 10 C 1.46907 * 111.01481 * 146.33028 * 9 8 7 11 11 C 1.53001 * 109.46822 * 179.12426 * 10 9 8 12 12 C 1.53003 * 109.46696 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47156 * 60.00112 * 12 11 10 14 14 C 1.50695 * 109.47286 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00484 * 119.99984 * 14 13 12 16 16 C 1.37882 * 120.00115 * 300.00062 * 14 13 12 17 17 N 1.31511 * 119.99791 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00086 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47139 * 59.99791 * 18 16 14 20 20 H 1.48497 * 109.46987 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46837 * 300.00181 * 18 16 14 22 22 C 1.53003 * 109.47211 * 299.99944 * 13 12 11 23 23 C 1.52994 * 109.47022 * 59.99793 * 22 13 12 24 24 C 1.47444 * 108.58784 * 24.04325 * 9 8 7 25 25 H 1.09000 * 109.47346 * 59.99758 * 1 2 3 26 26 H 1.09000 * 109.47705 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46939 * 300.00188 * 1 2 3 28 28 H 1.09002 * 110.99302 * 272.13040 * 7 5 3 29 29 H 1.08995 * 110.99003 * 35.90927 * 7 5 3 30 30 H 1.08993 * 110.37866 * 81.77867 * 8 7 5 31 31 H 1.09005 * 110.37455 * 204.12444 * 8 7 5 32 32 H 1.08991 * 109.47068 * 299.12577 * 10 9 8 33 33 H 1.09001 * 109.46923 * 299.99747 * 11 10 9 34 34 H 1.08991 * 109.47381 * 60.00092 * 11 10 9 35 35 H 1.08998 * 109.47406 * 299.99936 * 12 11 10 36 36 H 1.09007 * 109.46855 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47603 * 59.99677 * 13 12 11 38 38 H 0.97003 * 119.99828 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46838 * 299.99861 * 22 13 12 40 40 H 1.09001 * 109.47339 * 180.02562 * 22 13 12 41 41 H 1.09000 * 109.47362 * 180.02562 * 23 22 13 42 42 H 1.08998 * 109.47259 * 60.00326 * 23 22 13 43 43 H 1.08998 * 109.89066 * 239.63908 * 24 9 8 44 44 H 1.09001 * 109.89084 * 118.44467 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9778 0.8130 0.8970 7 6 4.1499 0.6111 -1.2757 8 6 5.4992 1.3566 -1.4279 9 7 5.2101 2.7475 -1.0167 10 6 6.3720 3.3526 -0.3518 11 6 6.0424 4.7948 0.0384 12 6 7.2527 5.4251 0.7303 13 6 8.4482 5.4156 -0.2245 14 6 9.6401 6.0370 0.4568 15 1 10.5427 5.4610 0.5977 16 6 9.5784 7.3412 0.9002 17 7 8.4795 8.0428 0.7282 18 14 11.0557 8.1112 1.7453 19 1 12.2164 8.1018 0.8191 20 1 10.7353 9.5109 2.1240 21 1 11.3895 7.3329 2.9651 22 6 8.7778 3.9734 -0.6147 23 6 7.5675 3.3430 -1.3066 24 6 4.0360 2.7395 -0.1249 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.3087 -0.4563 -1.1226 29 1 3.5064 0.7884 -2.1374 30 1 6.2519 0.9166 -0.7739 31 1 5.8333 1.3287 -2.4651 32 1 6.6168 2.7809 0.5433 33 1 5.7975 5.3664 -0.8568 34 1 5.1905 4.8016 0.7182 35 1 7.4980 4.8536 1.6254 36 1 7.0180 6.4528 1.0079 37 1 8.2029 5.9872 -1.1196 38 1 8.4362 8.9604 1.0399 39 1 9.0231 3.4018 0.2804 40 1 9.6297 3.9665 -1.2946 41 1 7.8021 2.3154 -1.5842 42 1 7.3222 3.9146 -2.2017 43 1 3.2404 3.3488 -0.5538 44 1 4.3130 3.1247 0.8564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:25 Heat of formation + Delta-G solvation = -98.890129 kcal Electronic energy + Delta-G solvation = -22745.428461 eV Core-core repulsion = 19468.898965 eV Total energy + Delta-G solvation = -3276.529496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90052 -39.22711 -36.97039 -36.39229 -33.16220 -31.44474 -30.24641 -28.92180 -28.36337 -27.55043 -24.53921 -23.18309 -22.02113 -21.18919 -20.39519 -19.68807 -18.73095 -17.92871 -16.97531 -16.66873 -16.30301 -15.87981 -14.81722 -14.57976 -14.13497 -13.89177 -13.57369 -13.35485 -13.05299 -12.95054 -12.66279 -12.53131 -12.39623 -12.08568 -11.66678 -11.57611 -11.19436 -11.06279 -11.01877 -10.99232 -10.95586 -10.64776 -10.51529 -10.48967 -10.31399 -10.11105 -9.72872 -9.30390 -8.82671 -8.59955 -8.24224 -8.10094 -5.92300 -3.98520 1.99605 2.45511 3.34660 3.39582 3.41914 4.05160 4.28291 4.41252 4.48374 4.68421 4.82249 4.89432 4.94005 5.17952 5.24942 5.25673 5.36602 5.47839 5.50011 5.58632 5.65688 5.88352 5.91499 5.94357 6.09231 6.16871 6.19041 6.36151 6.44592 6.48847 6.59177 6.73316 6.81949 7.00081 7.15078 7.20843 7.29971 7.42832 7.53405 7.59978 7.80922 8.09243 8.22436 8.53439 9.05645 9.65727 11.13121 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037112 B = 0.003338 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.297871 B = 8385.669183 C = 8888.665407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.500 6.500 5 C -0.108 4.108 6 H 0.113 0.887 7 C -0.114 4.114 8 C 0.043 3.957 9 N -0.524 5.524 10 C 0.085 3.915 11 C -0.110 4.110 12 C -0.108 4.108 13 C 0.049 3.951 14 C -0.513 4.513 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.107 4.107 23 C -0.106 4.106 24 C 0.054 3.946 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.030 0.970 36 H 0.093 0.907 37 H 0.026 0.974 38 H 0.259 0.741 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 -17.117 -2.313 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.315 3.685 4 O -0.387 6.387 5 C -0.128 4.128 6 H 0.131 0.869 7 C -0.152 4.152 8 C -0.085 4.085 9 N -0.248 5.248 10 C -0.023 4.023 11 C -0.148 4.148 12 C -0.146 4.146 13 C 0.031 3.969 14 C -0.552 4.552 15 H 0.070 0.930 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.074 4.074 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.111 0.889 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.891 -16.319 -2.716 20.973 hybrid contribution 0.690 0.005 1.325 1.494 sum -12.201 -16.314 -1.391 20.420 Atomic orbital electron populations 1.23267 0.76437 1.03603 1.02635 1.86512 1.23351 1.33557 1.84186 1.23528 0.91687 0.81262 0.72016 1.90681 1.66948 1.36289 1.44784 1.22378 0.87403 1.00843 1.02150 0.86896 1.22711 0.97117 0.99784 0.95603 1.23055 0.95537 0.88068 1.01822 1.63794 1.05018 1.16960 1.39025 1.21946 0.89269 0.96340 0.94721 1.21738 0.99110 0.93520 1.00384 1.21610 0.93658 1.01789 0.97554 1.18646 0.93488 0.89683 0.95124 1.21208 0.99027 0.97101 1.37826 0.92951 1.24968 0.95737 0.97241 0.96065 1.69868 1.26272 1.09566 1.47186 0.86725 0.83364 0.78264 0.80011 1.20370 1.21370 1.20421 1.21616 0.95190 0.99259 0.98466 1.21596 0.94804 0.99355 0.98629 1.22881 0.94550 0.92350 0.97588 0.91849 0.88142 0.91901 0.89736 0.90265 0.93080 0.89727 0.94645 0.91979 0.93961 0.95113 0.88888 0.95597 0.93055 0.93702 0.93334 0.93797 0.91765 0.88791 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.69 10.55 -39.25 -0.41 -4.10 16 3 C 0.47 5.70 7.26 36.00 0.26 5.96 16 4 O -0.50 -7.48 15.21 -18.75 -0.29 -7.76 16 5 C -0.11 -1.19 3.45 -89.95 -0.31 -1.50 16 6 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 7 C -0.11 -1.11 6.50 -24.59 -0.16 -1.27 16 8 C 0.04 0.50 5.40 -2.27 -0.01 0.49 16 9 N -0.52 -7.73 5.03 -223.25 -1.12 -8.85 16 10 C 0.08 1.44 1.53 -67.71 -0.10 1.34 16 11 C -0.11 -2.15 5.07 -26.73 -0.14 -2.29 16 12 C -0.11 -2.53 4.98 -26.73 -0.13 -2.66 16 13 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 14 C -0.51 -14.13 8.56 -34.44 -0.29 -14.42 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -25.58 11.32 55.43 0.63 -24.95 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.11 -2.21 5.14 -26.73 -0.14 -2.35 16 23 C -0.11 -1.85 5.09 -26.73 -0.14 -1.99 16 24 C 0.05 0.75 5.54 -2.83 -0.02 0.74 16 25 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 30 H 0.05 0.58 7.58 -51.93 -0.39 0.19 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.04 0.78 6.50 -51.93 -0.34 0.44 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.04 0.67 7.03 -51.93 -0.37 0.30 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.45 6.88 -51.93 -0.36 1.09 16 44 H 0.07 0.98 6.35 -51.93 -0.33 0.65 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -30.07 339.73 -9.04 -39.12 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.55 Total: -0.94 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.40 Total: -14.01 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: -0.50 Total: -33.80 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.70 Total: -11.86 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.07 -9.04 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.774 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds