Wall clock time and date at job start Tue Mar 31 2020 05:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99613 * 2 1 4 4 O 1.20827 * 120.00121 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00181 * 179.97438 * 3 2 1 6 6 H 1.09011 * 110.87417 * 62.38848 * 5 3 2 7 7 C 1.55146 * 110.98976 * 298.54976 * 5 3 2 8 8 C 1.54321 * 103.01583 * 206.25190 * 7 5 3 9 9 N 1.47441 * 107.23711 * 22.28189 * 8 7 5 10 10 C 1.46901 * 111.00067 * 123.25346 * 9 8 7 11 11 C 1.53004 * 109.46793 * 63.27748 * 10 9 8 12 12 C 1.53002 * 109.46877 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47298 * 300.00189 * 12 11 10 14 14 C 1.50701 * 109.47195 * 300.00069 * 13 12 11 15 15 H 1.08000 * 120.00082 * 120.00361 * 14 13 12 16 16 C 1.37873 * 119.99714 * 299.99797 * 14 13 12 17 17 N 1.31520 * 120.00310 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00159 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46731 * 90.00094 * 18 16 14 20 20 H 1.48496 * 109.47641 * 210.00405 * 18 16 14 21 21 H 1.48505 * 109.47097 * 330.00779 * 18 16 14 22 22 C 1.53004 * 109.47310 * 60.00077 * 13 12 11 23 23 C 1.52996 * 109.47062 * 183.27740 * 10 9 8 24 24 C 1.47849 * 108.56583 * 0.99014 * 9 8 7 25 25 H 1.09001 * 109.46843 * 60.00386 * 1 2 3 26 26 H 1.09000 * 109.46827 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47437 * 299.99982 * 1 2 3 28 28 H 1.08997 * 110.70511 * 87.87153 * 7 5 3 29 29 H 1.09000 * 110.70205 * 324.63305 * 7 5 3 30 30 H 1.09000 * 109.88867 * 262.87711 * 8 7 5 31 31 H 1.09001 * 110.02225 * 141.76729 * 8 7 5 32 32 H 1.09000 * 109.47354 * 303.27939 * 10 9 8 33 33 H 1.08996 * 109.47070 * 299.99677 * 11 10 9 34 34 H 1.09000 * 109.47014 * 59.99983 * 11 10 9 35 35 H 1.08998 * 109.46918 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.47033 * 60.00336 * 12 11 10 37 37 H 1.09000 * 109.47143 * 180.02562 * 13 12 11 38 38 H 0.96998 * 120.00146 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47070 * 180.02562 * 22 13 12 40 40 H 1.09000 * 109.47014 * 59.99857 * 22 13 12 41 41 H 1.09000 * 109.47199 * 300.00294 * 23 10 9 42 42 H 1.08998 * 109.47349 * 60.00251 * 23 10 9 43 43 H 1.09004 * 110.37579 * 94.73206 * 24 9 8 44 44 H 1.08999 * 110.37498 * 217.07434 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2751 0.0006 6 1 3.9792 0.8238 -0.9017 7 6 4.1570 0.6131 1.2733 8 6 5.5039 1.3448 1.4523 9 7 5.3986 2.6335 0.7438 10 6 5.6696 3.7567 1.6509 11 6 7.1113 3.6682 2.1556 12 6 7.3938 4.8384 3.0999 13 6 7.1958 6.1576 2.3508 14 6 8.1425 6.2173 1.1798 15 1 7.7547 6.3092 0.1760 16 6 9.5036 6.1547 1.3899 17 7 9.9759 6.0424 2.6122 18 14 10.6772 6.2280 -0.0616 19 1 11.0355 7.6425 -0.3374 20 1 11.9069 5.4588 0.2566 21 1 10.0219 5.6411 -1.2581 22 6 5.7541 6.2461 1.8461 23 6 5.4715 5.0762 0.9022 24 6 4.0450 2.7398 0.1586 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 4.3159 -0.4534 1.1146 29 1 3.5086 0.7837 2.1327 30 1 6.3092 0.7496 1.0217 31 1 5.6966 1.5183 2.5110 32 1 4.9849 3.7131 2.4979 33 1 7.2525 2.7282 2.6890 34 1 7.7961 3.7118 1.3087 35 1 8.4207 4.7751 3.4598 36 1 6.7091 4.7952 3.9469 37 1 7.3975 6.9913 3.0234 38 1 10.9336 5.9987 2.7601 39 1 5.6132 7.1857 1.3120 40 1 5.0694 6.2029 2.6931 41 1 6.1562 5.1197 0.0553 42 1 4.4444 5.1392 0.5427 43 1 3.3827 3.2850 0.8311 44 1 4.0892 3.2315 -0.8131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:27 Heat of formation + Delta-G solvation = -95.667270 kcal Electronic energy + Delta-G solvation = -23164.110428 eV Core-core repulsion = 19887.720686 eV Total energy + Delta-G solvation = -3276.389743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85741 -39.16354 -36.99035 -36.41815 -32.93095 -31.38997 -29.99722 -29.00973 -28.10066 -27.37396 -24.69641 -23.32660 -21.98146 -21.19775 -20.09991 -19.87500 -18.64985 -17.76647 -16.97580 -16.64833 -15.89187 -15.42729 -15.11185 -14.57860 -13.99908 -13.79557 -13.48921 -13.33451 -13.08252 -12.86993 -12.83328 -12.58532 -12.32419 -11.88113 -11.43893 -11.38561 -11.14052 -11.04844 -11.00959 -10.88163 -10.83822 -10.65842 -10.51831 -10.48815 -10.24421 -10.00760 -9.55147 -9.12925 -8.78107 -8.54952 -8.20296 -7.96707 -5.89187 -3.92726 2.00560 2.46609 3.36360 3.43335 3.47529 4.12535 4.42715 4.51600 4.53148 4.68836 4.83011 4.90308 5.00995 5.22965 5.29475 5.33045 5.41593 5.61960 5.66546 5.70195 5.79997 5.94053 6.01074 6.07209 6.15234 6.17541 6.32387 6.50973 6.56271 6.61554 6.74191 6.80355 6.89334 7.15112 7.26715 7.30517 7.42861 7.54643 7.59641 7.71603 7.82521 8.01060 8.22981 8.56992 9.09414 9.70255 11.16891 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030781 B = 0.003890 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.439476 B = 7196.337967 C = 7287.077734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.471 3.529 4 O -0.503 6.503 5 C -0.096 4.096 6 H 0.122 0.878 7 C -0.126 4.126 8 C 0.041 3.959 9 N -0.522 5.522 10 C 0.090 3.910 11 C -0.090 4.090 12 C -0.107 4.107 13 C 0.044 3.956 14 C -0.497 4.497 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.106 4.106 23 C -0.100 4.100 24 C 0.063 3.937 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.010 0.990 37 H 0.023 0.977 38 H 0.257 0.743 39 H 0.047 0.953 40 H 0.030 0.970 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.058 0.942 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.401 -13.203 -3.048 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.390 6.390 5 C -0.116 4.116 6 H 0.140 0.860 7 C -0.165 4.165 8 C -0.086 4.086 9 N -0.246 5.246 10 C -0.017 4.017 11 C -0.128 4.128 12 C -0.146 4.146 13 C 0.025 3.975 14 C -0.535 4.535 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.712 3.288 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.065 4.065 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.029 0.971 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.082 -12.891 -3.342 19.382 hybrid contribution -0.184 0.010 -0.133 0.227 sum -14.266 -12.881 -3.475 19.533 Atomic orbital electron populations 1.23263 0.76508 1.03604 1.02580 1.86522 1.23292 1.33558 1.84141 1.23649 0.91780 0.81251 0.71974 1.90684 1.67101 1.36345 1.44897 1.22276 0.86502 1.00380 1.02396 0.85966 1.22783 0.97494 1.00798 0.95425 1.22855 0.96072 0.90921 0.98789 1.63745 1.24977 1.02140 1.33744 1.21901 0.98048 0.89825 0.91959 1.21434 0.93957 0.97057 1.00329 1.21519 1.02178 0.95682 0.95177 1.18690 0.89725 0.93653 0.95410 1.21153 0.90629 1.48776 0.92938 0.92625 1.24924 0.98258 0.95531 0.95254 1.69871 1.12825 1.51185 1.19429 0.86717 0.80776 0.77843 0.83419 1.20989 1.21441 1.19874 1.21545 0.99316 0.96520 0.97047 1.21494 0.99227 0.93343 0.99740 1.22910 0.89778 0.92311 1.01499 0.91895 0.88128 0.91933 0.89587 0.91292 0.90110 0.91849 0.95593 0.95067 0.90156 0.88926 0.97086 0.95887 0.93261 0.93385 0.95097 0.90246 0.94548 0.92336 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.81 10.55 -39.26 -0.41 -4.22 16 3 C 0.47 5.85 7.26 36.01 0.26 6.12 16 4 O -0.50 -7.67 15.55 -18.75 -0.29 -7.96 16 5 C -0.10 -1.11 3.54 -89.63 -0.32 -1.43 16 6 H 0.12 1.22 8.14 -51.92 -0.42 0.80 16 7 C -0.13 -1.36 6.39 -24.90 -0.16 -1.52 16 8 C 0.04 0.55 6.16 -2.84 -0.02 0.53 16 9 N -0.52 -8.33 5.03 -223.29 -1.12 -9.45 16 10 C 0.09 1.66 1.50 -67.71 -0.10 1.56 16 11 C -0.09 -1.87 4.91 -26.73 -0.13 -2.01 16 12 C -0.11 -2.50 5.23 -26.73 -0.14 -2.64 16 13 C 0.04 1.07 2.59 -91.77 -0.24 0.84 16 14 C -0.50 -13.25 6.61 -34.44 -0.23 -13.48 16 15 H 0.06 1.49 6.71 -52.49 -0.35 1.13 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 18 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.11 -2.24 5.41 -26.75 -0.14 -2.39 16 23 C -0.10 -1.96 4.79 -26.76 -0.13 -2.09 16 24 C 0.06 0.90 4.41 -2.30 -0.01 0.89 16 25 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.87 6.56 -51.93 -0.34 0.53 16 32 H 0.03 0.49 8.13 -51.93 -0.42 0.06 16 33 H 0.03 0.59 6.70 -51.93 -0.35 0.24 16 34 H 0.08 1.89 7.22 -51.93 -0.37 1.52 16 35 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 36 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.71 6.62 -51.93 -0.34 1.36 16 42 H 0.04 0.65 6.84 -51.93 -0.36 0.29 16 43 H 0.06 0.92 6.80 -51.93 -0.35 0.57 16 44 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -29.47 335.51 -8.95 -38.42 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.41 Total: -0.77 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.38 Total: -12.72 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: -0.50 Total: -34.10 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.71 Total: -12.18 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.47 -8.95 -38.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.247 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds