Wall clock time and date at job start Tue Mar 31 2020 05:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34224 * 117.00342 * 2 1 4 4 O 1.20829 * 119.99985 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00557 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.59387 * 303.00893 * 5 3 2 7 7 C 1.54936 * 110.66616 * 66.19247 * 5 3 2 8 8 C 1.54592 * 102.92198 * 155.85172 * 7 5 3 9 9 C 1.53988 * 105.13867 * 338.04363 * 8 7 5 10 10 N 1.47902 * 107.06161 * 358.77282 * 9 8 7 11 11 C 1.46897 * 111.00156 * 145.84435 * 10 9 8 12 12 C 1.53000 * 109.47283 * 58.77130 * 11 10 9 13 13 C 1.52996 * 109.47328 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.47367 * 59.99938 * 13 12 11 15 15 C 1.50696 * 109.46885 * 59.99759 * 14 13 12 16 16 H 1.07998 * 120.00363 * 239.99790 * 15 14 13 17 17 C 1.37878 * 119.99597 * 60.00812 * 15 14 13 18 18 N 1.31514 * 120.00505 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99830 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47075 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47324 * 119.99264 * 19 17 15 22 22 H 1.48496 * 109.47405 * 239.99682 * 19 17 15 23 23 C 1.53007 * 109.46816 * 300.00036 * 14 13 12 24 24 C 1.52998 * 109.46896 * 60.00101 * 23 14 13 25 25 H 1.09002 * 109.46918 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47482 * 300.00243 * 1 2 3 27 27 H 1.09002 * 109.46707 * 60.00389 * 1 2 3 28 28 H 1.09005 * 110.72250 * 37.49377 * 7 5 3 29 29 H 1.09004 * 110.72413 * 274.21202 * 7 5 3 30 30 H 1.09003 * 110.30546 * 219.13104 * 8 7 5 31 31 H 1.08999 * 110.31114 * 96.96401 * 8 7 5 32 32 H 1.09000 * 109.91824 * 118.13277 * 9 8 7 33 33 H 1.09004 * 109.91752 * 239.42350 * 9 8 7 34 34 H 1.08997 * 109.47330 * 178.77478 * 11 10 9 35 35 H 1.09002 * 109.46585 * 300.00131 * 12 11 10 36 36 H 1.08991 * 109.47086 * 59.99669 * 12 11 10 37 37 H 1.08997 * 109.47062 * 300.00211 * 13 12 11 38 38 H 1.08992 * 109.47292 * 180.02562 * 13 12 11 39 39 H 1.09002 * 109.47222 * 180.02562 * 14 13 12 40 40 H 0.96994 * 120.00297 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.47307 * 300.00166 * 23 14 13 42 42 H 1.09004 * 109.46885 * 179.97438 * 23 14 13 43 43 H 1.09006 * 109.47145 * 179.97438 * 24 23 14 44 44 H 1.09002 * 109.47496 * 60.00228 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9780 0.7400 0.8565 7 6 4.1436 0.7188 -1.3254 8 6 5.5172 1.4210 -1.4258 9 6 5.3936 2.6747 -0.5403 10 7 4.0171 2.6901 0.0005 11 6 3.9910 3.2510 1.3579 12 6 4.5506 4.6748 1.3323 13 6 4.5240 5.2587 2.7462 14 6 5.3787 4.3913 3.6725 15 6 6.7981 4.3641 3.1669 16 1 7.2553 3.4253 2.8915 17 6 7.5130 5.5378 3.0561 18 7 6.9562 6.6812 3.3913 19 14 9.2727 5.5040 2.4301 20 1 9.6623 4.1042 2.1237 21 1 9.3759 6.3277 1.1988 22 1 10.1789 6.0532 3.4704 23 6 4.8190 2.9676 3.6981 24 6 4.8457 2.3836 2.2842 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.5080 0.9926 -2.1676 29 1 4.2665 -0.3628 -1.2691 30 1 5.7220 1.7055 -2.4579 31 1 6.3044 0.7679 -1.0492 32 1 6.1132 2.6245 0.2770 33 1 5.5680 3.5698 -1.1374 34 1 2.9642 3.2707 1.7232 35 1 5.5774 4.6549 0.9670 36 1 3.9420 5.2925 0.6721 37 1 3.4974 5.2784 3.1119 38 1 4.9222 6.2731 2.7279 39 1 5.3594 4.8072 4.6799 40 1 7.4591 7.5069 3.3130 41 1 3.7924 2.9873 4.0637 42 1 5.4282 2.3495 4.3577 43 1 4.4474 1.3691 2.3025 44 1 5.8724 2.3639 1.9186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:18 Heat of formation + Delta-G solvation = -86.507154 kcal Electronic energy + Delta-G solvation = -23947.794906 eV Core-core repulsion = 20671.802376 eV Total energy + Delta-G solvation = -3275.992530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.67935 -39.17588 -36.70505 -36.15270 -32.85675 -31.14701 -30.15254 -29.43777 -27.51106 -27.42067 -24.65387 -23.31225 -21.77738 -21.65376 -20.38833 -19.52526 -18.32510 -17.55622 -16.56011 -16.41243 -15.87587 -15.60607 -14.94527 -14.48986 -13.96715 -13.87363 -13.48893 -13.20047 -13.12365 -12.84492 -12.68903 -12.22962 -12.01764 -11.78698 -11.58669 -11.37182 -11.16067 -11.05613 -10.95154 -10.82174 -10.76600 -10.58747 -10.51288 -10.17681 -10.15097 -10.02080 -9.51478 -9.27595 -8.86004 -8.61592 -8.25670 -7.90493 -5.94612 -3.99307 2.35447 2.65048 3.29090 3.38227 3.39749 4.30493 4.45076 4.59945 4.65702 4.98393 5.03027 5.08633 5.10651 5.27237 5.35797 5.43052 5.53339 5.61799 5.66178 5.81263 5.83439 5.93986 6.00513 6.15305 6.23023 6.35325 6.39634 6.49222 6.54259 6.67687 6.71974 6.78523 6.87403 6.99503 7.12339 7.25928 7.44393 7.54283 7.62219 7.77387 7.93459 7.97854 8.20360 8.50999 9.03001 9.63768 11.11271 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024290 B = 0.005346 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.459636 B = 5236.528800 C = 5829.512730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.468 3.532 4 O -0.483 6.483 5 C 0.062 3.938 6 H 0.098 0.902 7 C -0.106 4.106 8 C -0.130 4.130 9 C 0.030 3.970 10 N -0.492 5.492 11 C 0.081 3.919 12 C -0.088 4.088 13 C -0.107 4.107 14 C 0.043 3.957 15 C -0.500 4.500 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.881 3.119 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.102 4.102 24 C -0.142 4.142 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.014 0.986 38 H 0.092 0.908 39 H 0.024 0.976 40 H 0.258 0.742 41 H 0.032 0.968 42 H 0.045 0.955 43 H 0.035 0.965 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 -13.022 -8.310 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.309 3.691 4 O -0.367 6.367 5 C -0.048 4.048 6 H 0.115 0.885 7 C -0.144 4.144 8 C -0.168 4.168 9 C -0.097 4.097 10 N -0.216 5.216 11 C -0.026 4.026 12 C -0.126 4.126 13 C -0.145 4.145 14 C 0.025 3.975 15 C -0.538 4.538 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.710 3.290 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.140 4.140 24 C -0.180 4.180 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.032 0.968 38 H 0.111 0.889 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.981 -12.179 -8.628 16.925 hybrid contribution 1.215 -0.333 0.246 1.283 sum -6.766 -12.511 -8.382 16.509 Atomic orbital electron populations 1.23203 0.76775 1.03287 1.02487 1.86490 1.23057 1.33937 1.84714 1.23546 0.91591 0.81207 0.72753 1.90667 1.66579 1.36159 1.43332 1.22441 0.87545 0.93868 1.00911 0.88458 1.22398 0.96802 0.99991 0.95257 1.22433 0.96539 0.96965 1.00887 1.22965 0.90023 0.98172 0.98552 1.64746 1.20845 1.12691 1.23305 1.21944 0.99187 0.96372 0.85131 1.21370 1.00590 0.92047 0.98586 1.21504 0.96014 1.03311 0.93689 1.18705 0.94159 0.89043 0.95634 1.21135 0.97107 0.92672 1.42901 0.92861 1.24927 0.97519 0.95743 0.95660 1.69875 1.36389 0.97828 1.48728 0.86705 0.85750 0.77962 0.78607 1.19918 1.21098 1.21198 1.21482 0.98292 0.99896 0.94321 1.22148 1.01240 0.96648 0.97975 0.88359 0.92015 0.92082 0.90650 0.90116 0.90807 0.91115 0.91242 0.89913 0.90917 0.90977 0.94097 0.96768 0.88937 0.95785 0.93198 0.94879 0.93611 0.94633 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -4.70 10.56 -39.24 -0.41 -5.11 16 3 C 0.47 7.20 7.16 36.01 0.26 7.46 16 4 O -0.48 -8.93 15.56 -18.75 -0.29 -9.23 16 5 C 0.06 0.90 2.64 -66.94 -0.18 0.72 16 6 H 0.10 1.37 5.52 -51.93 -0.29 1.08 16 7 C -0.11 -1.22 6.49 -24.87 -0.16 -1.39 16 8 C -0.13 -1.52 6.93 -25.38 -0.18 -1.70 16 9 C 0.03 0.46 5.15 -2.76 -0.01 0.45 16 10 N -0.49 -8.32 4.62 -216.08 -1.00 -9.32 16 11 C 0.08 1.56 2.16 -67.71 -0.15 1.41 16 12 C -0.09 -1.90 4.86 -26.73 -0.13 -2.03 16 13 C -0.11 -2.54 5.23 -26.73 -0.14 -2.68 16 14 C 0.04 1.05 2.59 -91.77 -0.24 0.81 16 15 C -0.50 -12.99 6.61 -34.44 -0.23 -13.22 16 16 H 0.05 1.37 6.71 -52.49 -0.35 1.02 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.94 11.32 55.43 0.63 -24.31 16 19 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.10 -2.11 5.41 -26.73 -0.14 -2.26 16 24 C -0.14 -2.65 4.31 -26.73 -0.12 -2.77 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.17 5.30 -51.93 -0.28 0.90 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.50 7.49 -51.93 -0.39 1.11 16 35 H 0.07 1.65 6.05 -51.93 -0.31 1.33 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 39 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.04 0.59 5.99 -51.93 -0.31 0.28 16 44 H 0.08 1.53 4.52 -51.93 -0.23 1.29 16 LS Contribution 330.00 15.07 4.97 4.97 Total: -1.00 -29.43 330.00 -8.67 -38.10 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.10 Total: 1.34 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -0.44 Total: -12.19 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: -0.37 Total: -33.63 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.71 Total: -14.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.43 -8.67 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.409 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds