Wall clock time and date at job start Tue Mar 31 2020 05:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34221 * 117.00371 * 2 1 4 4 O 1.20833 * 119.99851 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00252 * 180.02562 * 3 2 1 6 6 H 1.08995 * 115.54820 * 325.67308 * 5 3 2 7 7 C 1.53003 * 117.51639 * 111.37645 * 5 3 2 8 8 C 1.53002 * 60.00243 * 107.47898 * 7 5 3 9 9 H 1.08996 * 117.52039 * 252.51744 * 8 7 5 10 10 C 1.52999 * 117.49923 * 107.48566 * 8 7 5 11 11 N 1.46900 * 109.47165 * 116.37752 * 10 8 7 12 12 C 1.46901 * 110.99890 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46769 * 204.99887 * 12 11 10 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47317 * 59.99960 * 14 13 12 16 16 C 1.50703 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99751 * 120.00134 * 16 15 14 18 18 C 1.37880 * 119.99788 * 300.00202 * 16 15 14 19 19 N 1.31510 * 119.99893 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99568 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47470 * 90.00234 * 20 18 16 22 22 H 1.48501 * 109.47000 * 209.99981 * 20 18 16 23 23 H 1.48498 * 109.47335 * 329.99935 * 20 18 16 24 24 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 25 25 C 1.52997 * 109.47452 * 59.99536 * 24 15 14 26 26 H 1.09001 * 109.47068 * 299.99809 * 1 2 3 27 27 H 1.09007 * 109.47180 * 59.99607 * 1 2 3 28 28 H 1.09000 * 109.47565 * 179.97438 * 1 2 3 29 29 H 1.09004 * 117.49862 * 359.97438 * 7 5 3 30 30 H 1.09007 * 117.49394 * 214.97346 * 7 5 3 31 31 H 1.09005 * 109.46909 * 356.38086 * 10 8 7 32 32 H 1.09002 * 109.47167 * 236.38135 * 10 8 7 33 33 H 1.00898 * 110.99796 * 303.95800 * 11 10 8 34 34 H 1.08992 * 109.47407 * 325.00184 * 12 11 10 35 35 H 1.09002 * 109.47398 * 300.00295 * 13 12 11 36 36 H 1.09001 * 109.47194 * 60.00475 * 13 12 11 37 37 H 1.08996 * 109.47853 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 39 39 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 40 40 H 0.96996 * 119.99480 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.46935 * 299.99411 * 24 15 14 42 42 H 1.09001 * 109.46812 * 179.97438 * 24 15 14 43 43 H 1.08993 * 109.47194 * 179.97438 * 25 24 15 44 44 H 1.09002 * 109.46695 * 59.99734 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 1 4.0785 0.4882 0.5536 7 6 4.2459 1.8059 -1.2643 8 6 4.2008 2.6670 -0.0005 9 1 3.5298 3.5259 0.0000 10 6 5.5056 2.8487 0.7775 11 7 5.8929 4.2656 0.7603 12 6 7.1447 4.4782 1.4990 13 6 7.2029 5.9233 1.9985 14 6 8.5070 6.1450 2.7673 15 6 9.6961 5.8767 1.8427 16 6 10.9806 6.0945 2.6001 17 1 11.6847 5.2835 2.7135 18 6 11.2568 7.3291 3.1483 19 7 10.3996 8.3167 3.0097 20 14 12.8493 7.5991 4.0865 21 1 13.9055 8.0560 3.1479 22 1 12.6380 8.6305 5.1338 23 1 13.2705 6.3256 4.7237 24 6 9.6378 4.4317 1.3431 25 6 8.3338 4.2100 0.5743 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.6044 2.0980 -2.0958 30 1 5.2052 1.3686 -1.5416 31 1 6.2911 2.2517 0.3140 32 1 5.3625 2.5236 1.8080 33 1 5.9689 4.6082 -0.1857 34 1 7.1848 3.7979 2.3495 35 1 7.1628 6.6037 1.1478 36 1 6.3556 6.1145 2.6569 37 1 8.5483 7.1742 3.1235 38 1 8.5475 5.4646 3.6179 39 1 9.6556 6.5571 0.9921 40 1 10.5938 9.1851 3.3957 41 1 9.6783 3.7513 2.1937 42 1 10.4848 4.2407 0.6840 43 1 8.2925 3.1807 0.2180 44 1 8.2933 4.8904 -0.2763 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:02 Heat of formation + Delta-G solvation = -83.522638 kcal Electronic energy + Delta-G solvation = -21715.691431 eV Core-core repulsion = 18439.828319 eV Total energy + Delta-G solvation = -3275.863112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86813 -38.59757 -37.64073 -36.39105 -34.39224 -32.13621 -29.80166 -29.01072 -28.32323 -25.87567 -24.52642 -23.71690 -21.64326 -21.18951 -20.72970 -20.17056 -18.79127 -18.02175 -17.07005 -16.62011 -16.29715 -15.60339 -14.94853 -14.58630 -14.35051 -14.09559 -13.78142 -13.44759 -13.17011 -12.95381 -12.79584 -12.55885 -12.30195 -12.16014 -11.83827 -11.53133 -11.25816 -11.13718 -11.03675 -10.93078 -10.74495 -10.59963 -10.45999 -10.41860 -10.29991 -10.15708 -9.77404 -9.34676 -8.91611 -8.69713 -8.25764 -8.02580 -5.93836 -3.99991 1.80697 2.32165 3.32353 3.39317 3.42290 3.42531 4.12684 4.37198 4.43163 4.46993 4.75611 4.77234 4.82432 4.84116 5.12806 5.18034 5.30964 5.35217 5.39740 5.46880 5.57081 5.60857 5.71653 5.88958 6.01152 6.06376 6.15135 6.37148 6.41014 6.51522 6.63507 6.75013 6.79733 6.92228 7.16219 7.29709 7.38897 7.46742 7.56194 7.66696 7.80306 8.07094 8.22403 8.52081 9.04224 9.64390 11.11629 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.052496 B = 0.002503 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.242117 B =11185.509295 C =11366.690725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.492 3.508 4 O -0.504 6.504 5 C -0.169 4.169 6 H 0.136 0.864 7 C -0.147 4.147 8 C -0.106 4.106 9 H 0.129 0.871 10 C 0.087 3.913 11 N -0.685 5.685 12 C 0.091 3.909 13 C -0.102 4.102 14 C -0.109 4.109 15 C 0.048 3.952 16 C -0.513 4.513 17 H 0.053 0.947 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.104 4.104 25 C -0.142 4.142 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.339 0.661 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.032 0.968 39 H 0.024 0.976 40 H 0.259 0.741 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.718 -15.522 -7.431 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.335 3.665 4 O -0.391 6.391 5 C -0.189 4.189 6 H 0.154 0.846 7 C -0.184 4.184 8 C -0.125 4.125 9 H 0.147 0.853 10 C -0.042 4.042 11 N -0.314 5.314 12 C -0.018 4.018 13 C -0.140 4.140 14 C -0.148 4.148 15 C 0.030 3.970 16 C -0.551 4.551 17 H 0.071 0.929 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.143 4.143 25 C -0.181 4.181 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.394 -14.875 -6.835 23.168 hybrid contribution 1.225 -0.291 -0.077 1.261 sum -15.170 -15.166 -6.912 22.536 Atomic orbital electron populations 1.23287 0.76198 1.03726 1.02664 1.86488 1.23448 1.33328 1.84112 1.22689 0.90557 0.81226 0.72044 1.90687 1.66854 1.36401 1.45176 1.21799 0.88013 1.02028 1.07019 0.84628 1.23246 1.01994 1.02062 0.91074 1.22611 0.99032 0.92601 0.98246 0.85338 1.21542 0.92505 0.90494 0.99695 1.60664 1.34704 1.15702 1.20374 1.21669 0.85563 0.99047 0.95489 1.21575 0.99164 0.93477 0.99781 1.21619 0.92050 1.03595 0.97526 1.18657 0.93685 0.89811 0.94839 1.21235 1.03700 0.96240 1.33952 0.92915 1.24970 0.96553 0.96202 0.96333 1.69878 1.35107 1.02197 1.45672 0.86657 0.84094 0.77853 0.79743 1.20819 1.21288 1.20040 1.21569 0.93966 1.00711 0.98026 1.22231 0.97647 0.99174 0.99053 0.91771 0.91885 0.88016 0.88032 0.87089 0.94681 0.90471 0.84301 0.91178 0.93013 0.93301 0.88936 0.94964 0.95812 0.93104 0.93522 0.93675 0.94111 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.48 10.56 -39.23 -0.41 -3.89 16 3 C 0.49 5.47 7.74 36.01 0.28 5.74 16 4 O -0.50 -7.01 16.01 -18.76 -0.30 -7.31 16 5 C -0.17 -1.56 6.02 -91.77 -0.55 -2.11 16 6 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 7 C -0.15 -1.21 9.88 -26.73 -0.26 -1.47 16 8 C -0.11 -1.10 5.46 -90.62 -0.49 -1.59 16 9 H 0.13 1.57 7.67 -51.93 -0.40 1.17 16 10 C 0.09 0.99 5.76 -3.82 -0.02 0.97 16 11 N -0.68 -9.49 6.25 -106.72 -0.67 -10.15 16 12 C 0.09 1.50 2.47 -67.71 -0.17 1.33 16 13 C -0.10 -1.97 5.53 -26.73 -0.15 -2.12 16 14 C -0.11 -2.55 4.98 -26.73 -0.13 -2.68 16 15 C 0.05 1.19 2.10 -91.77 -0.19 1.00 16 16 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 C -0.10 -2.13 5.14 -26.73 -0.14 -2.27 16 25 C -0.14 -2.37 5.17 -26.73 -0.14 -2.51 16 26 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.11 0.76 8.03 -51.93 -0.42 0.35 16 31 H 0.04 0.38 7.17 -51.93 -0.37 0.00 16 32 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.34 4.43 8.47 -39.29 -0.33 4.10 16 34 H 0.07 1.18 7.80 -51.93 -0.41 0.78 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 44 H 0.06 0.96 8.13 -51.93 -0.42 0.53 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -30.03 354.12 -9.39 -39.42 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.66 Total: 2.27 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -1.29 Total: -17.19 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.04 Total: -34.96 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.71 Total: -11.21 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.03 -9.39 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.100 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds