Wall clock time and date at job start Tue Mar 31 2020 05:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99609 * 2 1 4 4 O 1.20824 * 120.00025 * 359.97438 * 3 2 1 5 5 C 1.50692 * 119.99882 * 180.02562 * 3 2 1 6 6 H 1.09003 * 115.54827 * 325.66648 * 5 3 2 7 7 C 1.52997 * 117.50304 * 111.37203 * 5 3 2 8 8 C 1.52994 * 117.50033 * 179.97438 * 5 3 2 9 9 H 1.09005 * 117.50378 * 144.99110 * 8 5 3 10 10 C 1.52997 * 117.49987 * 359.97438 * 8 5 3 11 11 N 1.46896 * 109.47579 * 174.99953 * 10 8 5 12 12 C 1.46902 * 111.00360 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47443 * 205.00158 * 12 11 10 14 14 C 1.53000 * 109.47052 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47046 * 60.00044 * 14 13 12 16 16 C 1.50697 * 109.46995 * 60.00052 * 15 14 13 17 17 H 1.07991 * 120.00449 * 359.72153 * 16 15 14 18 18 C 1.37885 * 119.99686 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.72095 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.72528 * 18 16 15 21 21 H 1.48490 * 109.47339 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47239 * 120.00108 * 20 18 16 23 23 H 1.48504 * 109.46636 * 239.99667 * 20 18 16 24 24 C 1.52999 * 109.47159 * 299.99890 * 15 14 13 25 25 C 1.52995 * 109.47329 * 59.99942 * 24 15 14 26 26 H 1.08999 * 109.47435 * 60.00894 * 1 2 3 27 27 H 1.09007 * 109.46795 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47416 * 300.00303 * 1 2 3 29 29 H 1.09000 * 117.49657 * 359.97438 * 7 5 3 30 30 H 1.08995 * 117.50293 * 214.97685 * 7 5 3 31 31 H 1.08999 * 109.47422 * 54.99878 * 10 8 5 32 32 H 1.09009 * 109.46963 * 294.99956 * 10 8 5 33 33 H 1.00896 * 111.00395 * 303.95136 * 11 10 8 34 34 H 1.09003 * 109.47119 * 325.00358 * 12 11 10 35 35 H 1.08996 * 109.46823 * 59.99895 * 13 12 11 36 36 H 1.09003 * 109.47126 * 300.00195 * 13 12 11 37 37 H 1.08994 * 109.47083 * 299.99778 * 14 13 12 38 38 H 1.08998 * 109.46763 * 179.97438 * 14 13 12 39 39 H 1.09001 * 109.46892 * 179.97438 * 15 14 13 40 40 H 0.97000 * 119.99651 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.47084 * 180.02562 * 24 15 14 42 42 H 1.09007 * 109.46899 * 300.00470 * 24 15 14 43 43 H 1.08993 * 109.47426 * 180.02562 * 25 24 15 44 44 H 1.09003 * 109.46931 * 59.99985 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 4.0784 0.4885 0.5537 7 6 4.2454 1.8061 -1.2645 8 6 4.2006 2.6672 -0.0012 9 1 5.1302 2.7971 0.5531 10 6 3.2586 3.8728 -0.0017 11 7 4.0442 5.1082 0.1185 12 6 3.1708 6.2894 0.1208 13 6 3.9570 7.5060 -0.3720 14 6 3.0475 8.7363 -0.3690 15 6 2.5449 8.9955 1.0527 16 6 3.7200 9.2373 1.9647 17 1 4.7249 9.2045 1.5708 18 6 3.5122 9.4952 3.3031 19 7 2.2883 9.5357 3.7828 20 14 4.9692 9.7873 4.4351 21 1 6.2292 9.6881 3.6557 22 1 4.8645 11.1405 5.0375 23 1 4.9719 8.7649 5.5121 24 6 1.7587 7.7789 1.5454 25 6 2.6681 6.5486 1.5424 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.6037 2.0981 -2.0958 30 1 5.2045 1.3692 -1.5420 31 1 2.5704 3.7966 0.8401 32 1 2.6927 3.8913 -0.9332 33 1 4.6269 5.0876 0.9419 34 1 2.3211 6.1143 -0.5391 35 1 4.3154 7.3211 -1.3845 36 1 4.8067 7.6811 0.2879 37 1 2.1976 8.5615 -1.0286 38 1 3.6077 9.6031 -0.7195 39 1 1.8973 9.8723 1.0549 40 1 2.1422 9.7175 4.7243 41 1 1.4003 7.9638 2.5581 42 1 0.9087 7.6041 0.8857 43 1 2.1080 5.6818 1.8930 44 1 3.5181 6.7235 2.2021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:04 Heat of formation + Delta-G solvation = -75.374821 kcal Electronic energy + Delta-G solvation = -22671.297729 eV Core-core repulsion = 19395.787933 eV Total energy + Delta-G solvation = -3275.509796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83256 -38.41999 -37.59393 -36.11562 -34.25192 -31.92602 -29.43423 -28.84204 -28.16797 -25.45727 -24.53409 -23.98441 -21.43740 -21.26502 -20.66496 -20.07681 -18.64516 -17.85097 -16.64346 -16.44149 -15.72813 -15.43535 -14.94376 -14.45377 -14.40904 -13.84766 -13.56809 -13.34193 -13.12221 -12.95171 -12.67285 -12.39703 -12.21336 -11.79492 -11.64653 -11.27781 -11.10373 -10.99450 -10.95564 -10.82571 -10.61416 -10.48322 -10.40272 -10.30280 -10.17608 -9.97915 -9.55886 -9.06794 -8.88291 -8.59513 -8.23597 -7.67881 -5.90391 -3.94214 1.95215 2.46847 3.32166 3.40886 3.44517 3.53185 4.23195 4.49432 4.53344 4.63261 4.80421 4.88385 4.96799 5.06486 5.28520 5.33103 5.39962 5.51084 5.56841 5.69292 5.80744 5.92568 6.04503 6.13043 6.24456 6.36305 6.42822 6.57357 6.61053 6.64469 6.87149 6.89257 6.97491 7.20856 7.28736 7.42817 7.59020 7.62435 7.71737 7.82607 7.92119 8.03374 8.23883 8.57204 9.08989 9.68508 11.15559 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.003745 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.255265 B = 7474.993851 C = 7576.043714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.486 3.514 4 O -0.493 6.493 5 C -0.175 4.175 6 H 0.134 0.866 7 C -0.140 4.140 8 C -0.103 4.103 9 H 0.122 0.878 10 C 0.093 3.907 11 N -0.690 5.690 12 C 0.096 3.904 13 C -0.091 4.091 14 C -0.107 4.107 15 C 0.043 3.957 16 C -0.497 4.497 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.883 3.117 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.104 4.104 25 C -0.125 4.125 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.336 0.664 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.046 0.954 39 H 0.023 0.977 40 H 0.257 0.743 41 H 0.088 0.912 42 H 0.012 0.988 43 H 0.028 0.972 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -18.753 -7.984 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.329 3.671 4 O -0.380 6.380 5 C -0.194 4.194 6 H 0.152 0.848 7 C -0.177 4.177 8 C -0.121 4.121 9 H 0.140 0.860 10 C -0.036 4.036 11 N -0.320 5.320 12 C -0.013 4.013 13 C -0.129 4.129 14 C -0.146 4.146 15 C 0.025 3.975 16 C -0.536 4.536 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.711 3.289 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.213 1.213 24 C -0.142 4.142 25 C -0.164 4.164 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.154 0.846 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.031 0.969 43 H 0.046 0.954 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.496 -18.396 -8.508 20.275 hybrid contribution 0.063 -0.055 1.749 1.751 sum 0.559 -18.452 -6.759 19.658 Atomic orbital electron populations 1.23266 0.76256 1.03552 1.02757 1.86478 1.23401 1.33571 1.84260 1.22757 0.90543 0.81276 0.72503 1.90738 1.66909 1.35817 1.44538 1.21871 0.88263 1.01944 1.07348 0.84779 1.23110 1.01704 1.01844 0.90998 1.22532 1.00399 0.89022 1.00191 0.86041 1.21614 0.93038 0.86930 1.02024 1.60729 1.23827 1.01609 1.45848 1.21539 0.93855 0.89147 0.96794 1.21337 0.98964 0.93461 0.99119 1.21560 0.97360 0.96323 0.99315 1.18694 0.95235 0.93680 0.89937 1.21219 0.92792 1.46547 0.93001 0.92569 1.24955 0.95231 0.95717 0.98218 1.69895 1.19323 1.50206 1.13744 0.86674 0.83431 0.77696 0.81051 1.19805 1.21228 1.21285 1.21441 0.95395 0.94691 1.02700 1.21998 1.00678 0.97514 0.96205 0.91853 0.88185 0.91774 0.88033 0.87204 0.93492 0.90845 0.84642 0.92193 0.94055 0.91343 0.95006 0.93532 0.95933 0.93337 0.89365 0.96936 0.95368 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.92 10.57 -39.27 -0.41 -4.33 16 3 C 0.49 6.00 7.72 36.00 0.28 6.27 16 4 O -0.49 -7.57 12.86 -18.75 -0.24 -7.81 16 5 C -0.17 -1.74 6.30 -91.78 -0.58 -2.32 16 6 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 7 C -0.14 -1.28 9.88 -26.76 -0.26 -1.55 16 8 C -0.10 -1.16 5.95 -90.65 -0.54 -1.70 16 9 H 0.12 1.22 8.13 -51.93 -0.42 0.80 16 10 C 0.09 1.39 4.02 -3.83 -0.02 1.37 16 11 N -0.69 -11.27 6.25 -106.72 -0.67 -11.94 16 12 C 0.10 1.83 2.47 -67.71 -0.17 1.66 16 13 C -0.09 -1.80 5.30 -26.73 -0.14 -1.94 16 14 C -0.11 -2.30 5.41 -26.73 -0.14 -2.45 16 15 C 0.04 1.08 2.58 -91.77 -0.24 0.84 16 16 C -0.50 -13.37 6.62 -34.44 -0.23 -13.60 16 17 H 0.06 1.51 6.70 -52.49 -0.35 1.15 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -25.61 11.33 55.43 0.63 -24.98 16 20 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.10 -2.51 5.24 -26.73 -0.14 -2.65 16 25 C -0.13 -2.70 4.95 -26.73 -0.13 -2.83 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.10 1.00 8.03 -51.93 -0.42 0.58 16 30 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.81 6.22 -51.93 -0.32 0.48 16 32 H 0.07 1.18 7.21 -51.92 -0.37 0.81 16 33 H 0.34 5.35 8.46 -39.29 -0.33 5.02 16 34 H 0.06 1.18 7.80 -51.93 -0.40 0.78 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.45 6.61 -51.93 -0.34 1.11 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.09 2.40 6.08 -51.93 -0.32 2.08 16 42 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 43 H 0.03 0.59 7.45 -51.93 -0.39 0.20 16 44 H 0.07 1.66 7.20 -51.93 -0.37 1.29 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -29.96 343.78 -9.28 -39.24 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.41 Total: 4.37 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -1.34 Total: -16.00 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.04 Total: -36.92 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.66 Total: -12.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.96 -9.28 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.137 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds