Wall clock time and date at job start Tue Mar 31 2020 05:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34236 * 116.99949 * 2 1 4 4 O 1.20821 * 119.99773 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00117 * 179.97438 * 3 2 1 6 6 H 1.09002 * 115.56044 * 34.30909 * 5 3 2 7 7 C 1.52997 * 117.49669 * 248.62528 * 5 3 2 8 8 C 1.53000 * 117.49604 * 180.02562 * 5 3 2 9 9 H 1.09004 * 117.49237 * 214.97804 * 8 5 3 10 10 C 1.52989 * 117.50008 * 0.02562 * 8 5 3 11 11 N 1.46902 * 109.47363 * 185.01482 * 10 8 5 12 12 C 1.46896 * 111.00476 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46969 * 274.99731 * 12 11 10 14 14 C 1.53007 * 109.47147 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47106 * 60.00058 * 14 13 12 16 16 C 1.50699 * 109.46983 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99807 * 120.00238 * 16 15 14 18 18 C 1.37875 * 120.00016 * 299.99865 * 16 15 14 19 19 N 1.31516 * 120.00093 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46942 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46974 * 119.99797 * 20 18 16 23 23 H 1.48493 * 109.47392 * 240.00016 * 20 18 16 24 24 C 1.53000 * 109.47079 * 300.00385 * 15 14 13 25 25 C 1.52998 * 109.47303 * 154.99777 * 12 11 10 26 26 H 1.09007 * 109.47019 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47547 * 299.99647 * 1 2 3 28 28 H 1.09001 * 109.46708 * 60.00232 * 1 2 3 29 29 H 1.08999 * 117.49685 * 145.02383 * 7 5 3 30 30 H 1.08999 * 117.52022 * 359.97438 * 7 5 3 31 31 H 1.08997 * 109.47521 * 305.01305 * 10 8 5 32 32 H 1.09002 * 109.47645 * 65.01586 * 10 8 5 33 33 H 1.00907 * 110.99615 * 303.95250 * 11 10 8 34 34 H 1.08999 * 109.47302 * 34.99423 * 12 11 10 35 35 H 1.09002 * 109.47546 * 300.00191 * 13 12 11 36 36 H 1.09001 * 109.47117 * 59.99812 * 13 12 11 37 37 H 1.09004 * 109.46954 * 300.00061 * 14 13 12 38 38 H 1.08995 * 109.47089 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.46719 * 59.99758 * 15 14 13 40 40 H 0.96994 * 120.00047 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.46916 * 299.99957 * 24 15 14 42 42 H 1.09001 * 109.47125 * 180.02562 * 24 15 14 43 43 H 1.08995 * 109.47402 * 300.00024 * 25 12 11 44 44 H 1.09004 * 109.47211 * 60.00064 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0787 0.4884 -0.5533 7 6 4.2453 1.8062 1.2645 8 6 4.2007 2.6673 0.0012 9 1 5.1305 2.7968 -0.5528 10 6 3.2587 3.8728 0.0017 11 7 4.0442 5.1082 -0.1189 12 6 3.1709 6.2894 -0.1211 13 6 2.6675 6.5486 -1.5425 14 6 1.7573 7.7786 -1.5448 15 6 2.5431 8.9954 -1.0522 16 6 1.6468 10.2069 -1.0551 17 1 1.4551 10.7389 -0.1349 18 6 1.0717 10.6361 -2.2323 19 7 1.3048 9.9879 -3.3527 20 14 -0.0399 12.1374 -2.2358 21 1 -0.1405 12.6819 -0.8578 22 1 0.5289 13.1723 -3.1362 23 1 -1.3911 11.7518 -2.7161 24 6 3.0466 8.7361 0.3691 25 6 3.9572 7.5060 0.3713 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 5.2045 1.3691 1.5421 30 1 3.6039 2.0991 2.0957 31 1 2.5703 3.7964 -0.8399 32 1 2.6929 3.8915 0.9332 33 1 4.7345 5.1707 0.6145 34 1 2.3213 6.1144 0.5389 35 1 3.5170 6.7236 -2.2027 36 1 2.1073 5.6819 -1.8933 37 1 0.9078 7.6031 -0.8848 38 1 1.3984 7.9630 -2.5573 39 1 3.3926 9.1707 -1.7122 40 1 0.8999 10.2897 -4.1808 41 1 2.1970 8.5606 1.0292 42 1 3.6060 9.6032 0.7203 43 1 4.3159 7.3213 1.3838 44 1 4.8068 7.6810 -0.2889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:06 Heat of formation + Delta-G solvation = -77.835708 kcal Electronic energy + Delta-G solvation = -22308.731914 eV Core-core repulsion = 19033.115406 eV Total energy + Delta-G solvation = -3275.616508 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87820 -38.44749 -37.57456 -36.16244 -34.32601 -32.11009 -29.62749 -28.98008 -28.26667 -25.72347 -24.54976 -23.68431 -21.71298 -21.21120 -20.40588 -20.09686 -18.58693 -17.90952 -16.70952 -16.45283 -16.24442 -15.53805 -15.13300 -14.54866 -14.22033 -14.02193 -13.66446 -13.38118 -13.07456 -12.98138 -12.80906 -12.52153 -12.25292 -12.12725 -11.61597 -11.41546 -11.11640 -11.02467 -10.98085 -10.82876 -10.68158 -10.56676 -10.36249 -10.22124 -10.05867 -10.04585 -9.73266 -9.23141 -8.81222 -8.55748 -8.20963 -8.01202 -5.89104 -3.95092 1.90654 2.43185 3.34439 3.42310 3.44440 3.46296 4.10706 4.46323 4.50707 4.54440 4.73214 4.86978 4.92887 4.96244 5.21999 5.27243 5.39997 5.42584 5.50018 5.53619 5.63210 5.75500 5.97723 6.01760 6.09030 6.25339 6.34323 6.45352 6.54588 6.55470 6.74460 6.82307 6.85445 7.05504 7.25378 7.36853 7.51111 7.58693 7.68202 7.76253 7.86320 8.13827 8.28187 8.57595 9.09490 9.68996 11.16342 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023983 B = 0.003356 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.191586 B = 8341.008163 C = 9108.067393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.486 3.514 4 O -0.493 6.493 5 C -0.168 4.168 6 H 0.136 0.864 7 C -0.151 4.151 8 C -0.106 4.106 9 H 0.129 0.871 10 C 0.094 3.906 11 N -0.689 5.689 12 C 0.094 3.906 13 C -0.100 4.100 14 C -0.109 4.109 15 C 0.049 3.951 16 C -0.511 4.511 17 H 0.053 0.947 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.887 3.113 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.106 4.106 25 C -0.115 4.115 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.331 0.669 34 H 0.036 0.964 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.029 0.971 38 H 0.091 0.909 39 H 0.025 0.975 40 H 0.258 0.742 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.041 0.959 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 -20.512 7.881 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.329 3.671 4 O -0.379 6.379 5 C -0.188 4.188 6 H 0.154 0.846 7 C -0.188 4.188 8 C -0.124 4.124 9 H 0.146 0.854 10 C -0.035 4.035 11 N -0.320 5.320 12 C -0.015 4.015 13 C -0.139 4.139 14 C -0.148 4.148 15 C 0.030 3.970 16 C -0.550 4.550 17 H 0.071 0.929 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.144 4.144 25 C -0.153 4.153 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.148 0.852 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.109 0.891 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.271 -20.242 7.009 21.842 hybrid contribution -1.202 0.666 0.822 1.601 sum 3.069 -19.576 7.831 21.306 Atomic orbital electron populations 1.23277 0.76151 1.03600 1.02817 1.86473 1.23478 1.33496 1.84224 1.22742 0.90522 0.81322 0.72549 1.90741 1.66888 1.35828 1.44482 1.21805 0.88315 1.01826 1.06810 0.84617 1.23199 1.01903 1.02546 0.91111 1.22626 1.00965 0.89143 0.99698 0.85359 1.21657 0.93397 0.86828 1.01618 1.60626 1.17179 1.01732 1.52475 1.21564 0.93463 0.88282 0.98194 1.21583 0.99528 0.98443 0.94312 1.21614 0.96600 0.92780 1.03764 1.18652 0.95194 0.93114 0.90003 1.21290 1.28460 1.11328 0.93893 0.92874 1.24970 0.96613 0.96767 0.95726 1.69898 1.44584 1.39670 0.98719 0.86611 0.80627 0.83257 0.77934 1.19901 1.21137 1.21145 1.21604 0.97276 0.94651 1.00878 1.21722 0.99103 0.95658 0.98786 0.88142 0.91863 0.91675 0.87092 0.88189 0.89335 0.94881 0.85205 0.94627 0.92398 0.94319 0.95212 0.89051 0.95644 0.93223 0.93661 0.93420 0.94069 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.81 10.57 -39.27 -0.41 -4.22 16 3 C 0.49 5.81 7.72 36.01 0.28 6.09 16 4 O -0.49 -7.43 12.86 -18.75 -0.24 -7.68 16 5 C -0.17 -1.58 6.30 -91.77 -0.58 -2.16 16 6 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 7 C -0.15 -1.23 9.88 -26.75 -0.26 -1.49 16 8 C -0.11 -1.10 5.95 -90.65 -0.54 -1.64 16 9 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 10 C 0.09 1.33 4.03 -3.83 -0.02 1.32 16 11 N -0.69 -10.45 6.31 -106.74 -0.67 -11.12 16 12 C 0.09 1.71 2.49 -67.72 -0.17 1.54 16 13 C -0.10 -2.11 5.42 -26.73 -0.14 -2.26 16 14 C -0.11 -2.69 4.98 -26.73 -0.13 -2.82 16 15 C 0.05 1.25 2.10 -91.77 -0.19 1.05 16 16 C -0.51 -14.42 8.56 -34.44 -0.29 -14.71 16 17 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -26.03 11.32 55.43 0.63 -25.40 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.11 -2.27 5.15 -26.71 -0.14 -2.41 16 25 C -0.11 -2.07 5.20 -26.71 -0.14 -2.21 16 26 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 31 H 0.09 1.50 6.22 -51.93 -0.32 1.17 16 32 H 0.03 0.50 7.21 -51.93 -0.37 0.13 16 33 H 0.33 4.37 8.34 -39.29 -0.33 4.05 16 34 H 0.04 0.69 7.80 -51.93 -0.40 0.28 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.04 0.80 7.45 -51.93 -0.39 0.41 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -31.02 348.53 -9.41 -40.44 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.58 Total: 2.75 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.36 Total: -16.75 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.05 Total: -36.52 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.66 Total: -11.90 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.02 -9.41 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.400 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds