Wall clock time and date at job start Tue Mar 31 2020 05:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 117.00357 * 2 1 4 4 O 1.20820 * 119.99818 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99738 * 180.02562 * 3 2 1 6 6 H 1.08995 * 115.55642 * 34.33258 * 5 3 2 7 7 C 1.53006 * 117.49447 * 248.61702 * 5 3 2 8 8 C 1.52999 * 60.00089 * 252.51546 * 7 5 3 9 9 H 1.09002 * 117.49803 * 107.49109 * 8 7 5 10 10 C 1.53005 * 117.51737 * 252.51928 * 8 7 5 11 11 N 1.46900 * 109.47159 * 243.71706 * 10 8 7 12 12 C 1.46894 * 110.99696 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47262 * 274.99812 * 12 11 10 14 14 C 1.53002 * 109.47036 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47216 * 59.99975 * 14 13 12 16 16 C 1.50700 * 109.47378 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00168 * 120.00427 * 16 15 14 18 18 C 1.37881 * 119.99919 * 300.00182 * 16 15 14 19 19 N 1.31519 * 119.99977 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46955 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46868 * 120.00015 * 20 18 16 23 23 H 1.48496 * 109.47383 * 240.00624 * 20 18 16 24 24 C 1.52994 * 109.47607 * 300.00393 * 15 14 13 25 25 C 1.52997 * 109.47461 * 59.99457 * 24 15 14 26 26 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46462 * 299.99938 * 1 2 3 28 28 H 1.08997 * 109.46706 * 59.99792 * 1 2 3 29 29 H 1.09003 * 117.49619 * 145.02243 * 7 5 3 30 30 H 1.08995 * 117.50015 * 0.02562 * 7 5 3 31 31 H 1.08998 * 109.46915 * 3.72051 * 10 8 7 32 32 H 1.09001 * 109.46560 * 123.71648 * 10 8 7 33 33 H 1.00903 * 110.99985 * 56.04720 * 11 10 8 34 34 H 1.09001 * 109.47423 * 35.00518 * 12 11 10 35 35 H 1.08999 * 109.46846 * 300.00282 * 13 12 11 36 36 H 1.08999 * 109.46923 * 60.00193 * 13 12 11 37 37 H 1.08993 * 109.47168 * 300.00171 * 14 13 12 38 38 H 1.08999 * 109.47024 * 180.02562 * 14 13 12 39 39 H 1.09010 * 109.47149 * 60.00158 * 15 14 13 40 40 H 0.96996 * 119.99797 * 179.97438 * 19 18 16 41 41 H 1.09010 * 109.46674 * 300.00056 * 24 15 14 42 42 H 1.08993 * 109.47787 * 179.97438 * 24 15 14 43 43 H 1.08999 * 109.47332 * 180.02562 * 25 24 15 44 44 H 1.09001 * 109.47053 * 60.00117 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0782 0.4884 -0.5555 7 6 4.2465 1.8055 1.2631 8 6 4.2009 2.6669 -0.0005 9 1 3.5298 3.5259 -0.0001 10 6 5.5052 2.8489 -0.7794 11 7 5.8935 4.2655 -0.7601 12 6 7.1448 4.4784 -1.4996 13 6 8.3349 4.2075 -0.5770 14 6 9.6381 4.4299 -1.3471 15 6 9.6967 5.8758 -1.8437 16 6 10.9806 6.0951 -2.6017 17 1 10.9510 6.3973 -3.6381 18 6 12.1932 5.9098 -1.9719 19 7 12.2292 5.5413 -0.7100 20 14 13.7847 6.1809 -2.9116 21 1 13.4734 6.5879 -4.3055 22 1 14.5747 7.2496 -2.2491 23 1 14.5711 4.9213 -2.9272 24 6 8.5067 6.1469 -2.7662 25 6 7.2034 5.9245 -1.9963 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 5.2059 1.3682 1.5398 30 1 3.6054 2.0973 2.0949 31 1 6.2906 2.2505 -0.3177 32 1 5.3608 2.5257 -1.8104 33 1 5.9708 4.6064 0.1864 34 1 7.1835 3.7995 -2.3515 35 1 8.2961 4.8865 0.2748 36 1 8.2929 3.1775 -0.2228 37 1 9.6771 3.7513 -2.1991 38 1 10.4860 4.2364 -0.6899 39 1 9.6578 6.5546 -0.9916 40 1 13.0822 5.4106 -0.2671 41 1 8.5455 5.4681 -3.6183 42 1 8.5481 7.1771 -3.1197 43 1 6.3556 6.1172 -2.6536 44 1 7.1645 6.6031 -1.1442 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:08 Heat of formation + Delta-G solvation = -84.011518 kcal Electronic energy + Delta-G solvation = -21742.443013 eV Core-core repulsion = 18466.558701 eV Total energy + Delta-G solvation = -3275.884311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86000 -38.58001 -37.63024 -36.38323 -34.38271 -32.17740 -29.66793 -29.09813 -28.33628 -25.86384 -24.51403 -23.71456 -21.61320 -21.17913 -20.72306 -20.17741 -18.79909 -18.01445 -17.06043 -16.61148 -16.30193 -15.56844 -14.94014 -14.56018 -14.36913 -14.08599 -13.77115 -13.44110 -13.20401 -12.95631 -12.70218 -12.57804 -12.28987 -12.18862 -11.83624 -11.41286 -11.27857 -11.13188 -11.06393 -10.94060 -10.74910 -10.64753 -10.41079 -10.38450 -10.23967 -10.12080 -9.89062 -9.36712 -8.98198 -8.64974 -8.31100 -7.98395 -5.95688 -4.01457 1.81628 2.33147 3.30315 3.38550 3.42698 3.44582 4.14094 4.39104 4.45249 4.46005 4.76077 4.78854 4.83485 4.84648 5.14399 5.19477 5.32210 5.36171 5.42093 5.50690 5.61254 5.66351 5.75646 5.97112 6.03529 6.08823 6.20618 6.31201 6.39933 6.43556 6.66823 6.69603 6.85311 6.95420 7.15191 7.24268 7.38820 7.47465 7.54511 7.65469 7.78192 8.05738 8.18358 8.51076 9.03361 9.63100 11.09735 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.047036 B = 0.002560 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.149285 B =10933.065595 C =11174.933456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.492 3.508 4 O -0.505 6.505 5 C -0.169 4.169 6 H 0.136 0.864 7 C -0.146 4.146 8 C -0.106 4.106 9 H 0.128 0.872 10 C 0.087 3.913 11 N -0.686 5.686 12 C 0.090 3.910 13 C -0.143 4.143 14 C -0.105 4.105 15 C 0.048 3.952 16 C -0.510 4.510 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.109 4.109 25 C -0.100 4.100 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.340 0.660 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.038 0.962 37 H 0.032 0.968 38 H 0.090 0.910 39 H 0.024 0.976 40 H 0.258 0.742 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.769 -10.921 3.586 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.335 3.665 4 O -0.392 6.392 5 C -0.189 4.189 6 H 0.154 0.846 7 C -0.183 4.183 8 C -0.125 4.125 9 H 0.146 0.854 10 C -0.042 4.042 11 N -0.316 5.316 12 C -0.019 4.019 13 C -0.182 4.182 14 C -0.144 4.144 15 C 0.029 3.971 16 C -0.548 4.548 17 H 0.072 0.928 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.147 4.147 25 C -0.139 4.139 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.293 -10.501 3.179 22.194 hybrid contribution 1.307 -0.413 0.181 1.382 sum -17.986 -10.914 3.359 21.305 Atomic orbital electron populations 1.23286 0.76221 1.03724 1.02638 1.86495 1.23430 1.33333 1.84105 1.22692 0.90561 0.81211 0.71996 1.90678 1.66865 1.36413 1.45247 1.21805 0.87976 1.02037 1.07086 0.84607 1.23251 1.02037 1.02015 0.91042 1.22602 0.98996 0.92546 0.98331 0.85401 1.21531 0.92566 0.90462 0.99664 1.60653 1.34664 1.15931 1.20339 1.21645 0.86224 0.98032 0.95950 1.22281 0.97865 0.99054 0.98970 1.21549 0.94976 0.99125 0.98750 1.18660 0.91423 0.92779 0.94202 1.21303 0.90803 1.45208 0.97536 0.92753 1.24980 0.98989 0.95304 0.94867 1.69889 1.25207 1.47756 1.10250 0.86599 0.83864 0.77714 0.80192 1.19835 1.21125 1.21143 1.21631 0.94563 0.99857 0.98664 1.21489 0.97973 0.94774 0.99625 0.88019 0.91882 0.91800 0.87011 0.88033 0.94486 0.90517 0.84257 0.91199 0.92757 0.94363 0.94952 0.89160 0.95789 0.93222 0.93554 0.93373 0.93049 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.52 10.57 -39.25 -0.41 -3.93 16 3 C 0.49 5.52 7.74 36.00 0.28 5.80 16 4 O -0.50 -7.02 16.01 -18.75 -0.30 -7.32 16 5 C -0.17 -1.61 6.02 -91.77 -0.55 -2.16 16 6 H 0.14 1.08 8.14 -51.93 -0.42 0.65 16 7 C -0.15 -1.27 9.88 -26.73 -0.26 -1.53 16 8 C -0.11 -1.12 5.46 -90.61 -0.49 -1.61 16 9 H 0.13 1.56 7.67 -51.93 -0.40 1.16 16 10 C 0.09 1.02 5.76 -3.82 -0.02 1.00 16 11 N -0.69 -9.50 6.25 -106.72 -0.67 -10.17 16 12 C 0.09 1.49 2.47 -67.71 -0.17 1.32 16 13 C -0.14 -2.62 5.17 -26.73 -0.14 -2.76 16 14 C -0.11 -2.42 4.98 -26.73 -0.13 -2.55 16 15 C 0.05 1.17 2.10 -91.78 -0.19 0.98 16 16 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.11 -2.26 5.14 -26.74 -0.14 -2.40 16 25 C -0.10 -1.77 5.53 -26.73 -0.15 -1.92 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.11 0.84 8.03 -51.93 -0.42 0.42 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.43 7.17 -51.93 -0.37 0.05 16 32 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.34 4.51 8.47 -39.29 -0.33 4.18 16 34 H 0.07 1.18 7.80 -51.93 -0.41 0.77 16 35 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 36 H 0.04 0.65 7.45 -51.93 -0.39 0.26 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 39 H 0.02 0.65 8.14 -51.92 -0.42 0.22 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -29.87 354.13 -9.39 -39.26 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.66 Total: 2.52 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -1.29 Total: -17.25 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.04 Total: -34.88 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.71 Total: -11.25 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.87 -9.39 -39.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.749 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds