Wall clock time and date at job start Tue Mar 31 2020 05:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99446 * 2 1 4 4 H 1.48506 * 109.46533 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47232 * 299.99640 * 3 2 1 6 6 H 1.48498 * 109.46983 * 60.00130 * 3 2 1 7 7 C 1.37872 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00412 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47444 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46798 * 300.00181 * 10 9 7 12 12 C 1.53001 * 109.47436 * 299.99429 * 11 10 9 13 13 N 1.46905 * 109.47236 * 180.02562 * 12 11 10 14 14 C 1.46894 * 110.99955 * 180.02562 * 13 12 11 15 15 C 1.53232 * 109.34018 * 187.25475 * 14 13 12 16 16 N 1.47075 * 108.52108 * 306.17033 * 15 14 13 17 17 C 1.34778 * 120.87990 * 231.18305 * 16 15 14 18 18 N 1.34769 * 120.00278 * 5.28055 * 17 16 15 19 19 O 1.21592 * 119.99638 * 184.99966 * 17 16 15 20 20 C 1.47078 * 118.24014 * 51.45759 * 16 15 14 21 21 C 1.46895 * 111.00135 * 304.30477 * 13 12 11 22 22 C 1.53005 * 109.46661 * 60.00487 * 12 11 10 23 23 C 1.52993 * 109.47032 * 299.99719 * 22 12 11 24 24 H 0.96996 * 120.00684 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47579 * 300.00571 * 9 7 2 26 26 H 1.08999 * 109.47407 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.46741 * 60.00109 * 10 9 7 28 28 H 1.09004 * 109.46972 * 179.97438 * 11 10 9 29 29 H 1.08997 * 109.47490 * 60.00202 * 11 10 9 30 30 H 1.08997 * 109.47412 * 300.00820 * 12 11 10 31 31 H 1.09004 * 109.49233 * 67.29089 * 14 13 12 32 32 H 1.09001 * 109.51632 * 307.23044 * 14 13 12 33 33 H 1.08998 * 109.63189 * 186.45934 * 15 14 13 34 34 H 1.09002 * 109.79131 * 65.97643 * 15 14 13 35 35 H 0.97005 * 120.00568 * 174.64720 * 18 17 16 36 36 H 0.97003 * 119.99943 * 354.64878 * 18 17 16 37 37 H 1.09000 * 109.62724 * 68.24899 * 20 16 15 38 38 H 1.08994 * 109.63000 * 188.83211 * 20 16 15 39 39 H 1.08998 * 109.49389 * 292.70986 * 21 13 12 40 40 H 1.09003 * 109.49586 * 52.75866 * 21 13 12 41 41 H 1.08999 * 109.47407 * 59.99830 * 22 12 11 42 42 H 1.09001 * 109.46741 * 179.97438 * 22 12 11 43 43 H 1.08998 * 109.47850 * 300.00393 * 23 22 12 44 44 H 1.09004 * 109.47206 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 3.1241 -3.5803 -1.2517 12 6 2.2436 -3.6609 -2.5004 13 7 3.0873 -3.5831 -3.7004 14 6 2.2740 -3.6569 -4.9214 15 6 3.1969 -3.7551 -6.1407 16 7 4.1511 -2.6368 -6.0957 17 6 4.3296 -1.8364 -7.1653 18 7 3.5546 -1.9881 -8.2574 19 8 5.1865 -0.9740 -7.1429 20 6 4.9098 -2.4189 -4.8548 21 6 3.9147 -2.3694 -3.6844 22 6 1.2493 -2.4980 -2.4991 23 6 0.3706 -2.5797 -1.2493 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 0.8896 26 1 1.7005 -4.6060 -0.0023 27 1 2.8728 -3.6046 0.8877 28 1 3.8328 -4.4086 -1.2524 29 1 3.6691 -2.6364 -1.2517 30 1 1.6986 -4.6048 -2.5004 31 1 1.6578 -2.7614 -5.0027 32 1 1.6324 -4.5371 -4.8790 33 1 2.6048 -3.6948 -7.0539 34 1 3.7392 -4.7004 -6.1179 35 1 3.6296 -1.3637 -8.9960 36 1 2.9216 -2.7216 -8.3049 37 1 5.6134 -3.2382 -4.7072 38 1 5.4507 -1.4747 -4.9173 39 1 3.2756 -1.4921 -3.7831 40 1 4.4634 -2.3156 -2.7441 41 1 1.7942 -1.5540 -2.4990 42 1 0.6223 -2.5551 -3.3888 43 1 -0.1744 -3.5236 -1.2492 44 1 -0.3380 -1.7514 -1.2486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173335285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:26 Heat of formation + Delta-G solvation = -26.505129 kcal Electronic energy + Delta-G solvation = -23807.799644 eV Core-core repulsion = 20566.701748 eV Total energy + Delta-G solvation = -3241.097896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38800 -38.90773 -36.65867 -34.37968 -33.53407 -32.03447 -30.97177 -29.59214 -28.91666 -26.19698 -24.56679 -23.75029 -22.29258 -21.36753 -20.45021 -19.37676 -18.61005 -18.08309 -16.98237 -15.78590 -15.65278 -15.32053 -14.85252 -14.77072 -14.55925 -14.23608 -14.11793 -13.62326 -13.25822 -12.96960 -12.74710 -12.50321 -11.80119 -11.57195 -11.55304 -11.21103 -11.14950 -10.97604 -10.89711 -10.85402 -10.54470 -10.23367 -10.15782 -9.92702 -9.77954 -9.75017 -9.20229 -8.96798 -8.70953 -8.60143 -8.30646 -7.77806 -5.97307 -4.01638 2.74990 3.17183 3.28927 3.38289 3.41195 4.00690 4.17869 4.44312 4.87546 5.01045 5.09503 5.32429 5.33374 5.44395 5.52608 5.66529 5.70582 5.79011 5.88391 5.99329 6.07675 6.21786 6.32144 6.35229 6.41179 6.48953 6.51250 6.67864 6.73953 6.74787 6.83164 6.85471 7.05581 7.13248 7.32366 7.44153 7.45996 7.57269 7.74745 7.80438 7.94023 8.15322 8.48566 8.56578 9.01252 9.62016 11.08420 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.005599 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.061270 B = 4999.247173 C = 5781.396474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.880 3.120 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.055 0.945 9 C 0.043 3.957 10 C -0.106 4.106 11 C -0.100 4.100 12 C 0.091 3.909 13 N -0.532 5.532 14 C 0.038 3.962 15 C 0.118 3.882 16 N -0.627 5.627 17 C 0.708 3.292 18 N -0.871 5.871 19 O -0.597 6.597 20 C 0.134 3.866 21 C 0.034 3.966 22 C -0.129 4.129 23 C -0.104 4.104 24 H 0.257 0.743 25 H 0.023 0.977 26 H 0.033 0.967 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.395 0.605 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.013 0.987 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -9.180 -12.731 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.708 3.292 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.024 3.976 10 C -0.144 4.144 11 C -0.137 4.137 12 C -0.016 4.016 13 N -0.255 5.255 14 C -0.091 4.091 15 C -0.006 4.006 16 N -0.365 5.365 17 C 0.408 3.592 18 N -0.441 5.441 19 O -0.476 6.476 20 C 0.011 3.989 21 C -0.095 4.095 22 C -0.167 4.167 23 C -0.142 4.142 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.243 0.757 36 H 0.225 0.775 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.031 0.969 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.394 -8.946 -12.551 16.027 hybrid contribution -0.622 1.535 -0.395 1.703 sum 3.772 -7.410 -12.945 15.386 Atomic orbital electron populations 1.69874 1.05822 1.26028 1.51343 1.24927 0.94731 0.98763 0.95502 0.86724 0.80382 0.84526 0.77556 1.19728 1.21219 1.21118 1.21172 0.92692 0.90401 1.49421 0.92701 1.18698 0.92721 0.92169 0.93987 1.21540 0.98257 0.98556 0.96045 1.21514 0.97395 1.01228 0.93607 1.21753 0.92993 0.98307 0.88565 1.62295 1.23806 1.37514 1.01917 1.22419 0.94889 1.01678 0.90153 1.21748 0.91048 0.89866 0.97909 1.47344 1.44168 1.31730 1.13273 1.15872 0.81497 0.81467 0.80344 1.43141 1.44709 1.35857 1.20375 1.90948 1.36675 1.37626 1.82326 1.21774 0.93447 1.02722 0.80940 1.22676 0.96059 0.91979 0.98764 1.21983 0.97787 0.99212 0.97763 1.21447 0.98656 0.99241 0.94865 0.93263 0.95847 0.94809 0.93403 0.93687 0.90972 0.91275 0.93864 0.89917 0.90760 0.90663 0.75691 0.77486 0.91126 0.88905 0.93617 0.88569 0.90941 0.95169 0.96864 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.96 11.32 55.43 0.63 -24.33 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.88 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.50 -12.89 6.61 -34.45 -0.23 -13.12 16 8 H 0.05 1.42 6.71 -52.48 -0.35 1.07 16 9 C 0.04 1.01 2.59 -91.77 -0.24 0.77 16 10 C -0.11 -2.10 5.41 -26.73 -0.14 -2.24 16 11 C -0.10 -1.79 4.62 -26.73 -0.12 -1.91 16 12 C 0.09 1.54 2.29 -67.71 -0.15 1.38 16 13 N -0.53 -7.77 4.65 -226.05 -1.05 -8.82 16 14 C 0.04 0.47 4.99 -3.71 -0.02 0.45 16 15 C 0.12 1.18 6.59 -3.61 -0.02 1.16 16 16 N -0.63 -8.09 3.00 -177.92 -0.53 -8.62 16 17 C 0.71 9.93 8.58 -86.92 -0.75 9.19 16 18 N -0.87 -8.05 8.79 27.63 0.24 -7.80 16 19 O -0.60 -10.95 16.66 5.29 0.09 -10.86 16 20 C 0.13 1.86 6.61 -3.36 -0.02 1.84 16 21 C 0.03 0.52 4.83 -3.46 -0.02 0.50 16 22 C -0.13 -2.54 4.30 -26.73 -0.12 -2.66 16 23 C -0.10 -2.33 5.23 -26.73 -0.14 -2.47 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.40 4.67 -51.93 -0.24 1.16 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.61 6.72 -51.93 -0.35 0.26 16 32 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 33 H 0.07 0.52 5.63 -51.93 -0.29 0.23 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.41 3.26 8.93 -40.82 -0.36 2.90 16 36 H 0.39 2.53 6.33 -40.82 -0.26 2.27 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.40 7.09 -51.93 -0.37 1.03 16 39 H 0.05 0.82 6.80 -51.93 -0.35 0.46 16 40 H 0.10 1.52 5.83 -51.93 -0.30 1.22 16 41 H 0.07 1.64 5.75 -51.93 -0.30 1.34 16 42 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 43 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 LS Contribution 321.89 15.07 4.85 4.85 Total: -1.00 -30.67 321.89 -9.64 -40.30 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.78 Total: 4.71 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -2.06 Total: -5.56 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.72 Total: -49.57 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.67 -9.64 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.799 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds