Wall clock time and date at job start Tue Mar 31 2020 05:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99446 * 2 1 4 4 H 1.48506 * 109.46533 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47232 * 299.99640 * 3 2 1 6 6 H 1.48498 * 109.46983 * 60.00130 * 3 2 1 7 7 C 1.37872 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00412 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47444 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46798 * 300.00181 * 10 9 7 12 12 C 1.53001 * 109.47436 * 299.99429 * 11 10 9 13 13 N 1.46905 * 109.47236 * 180.02562 * 12 11 10 14 14 C 1.46894 * 110.99955 * 180.02562 * 13 12 11 15 15 C 1.53232 * 109.34018 * 187.25475 * 14 13 12 16 16 N 1.47075 * 108.52108 * 306.17033 * 15 14 13 17 17 C 1.34778 * 120.87990 * 231.18305 * 16 15 14 18 18 N 1.34769 * 120.00278 * 5.28055 * 17 16 15 19 19 O 1.21592 * 119.99638 * 184.99966 * 17 16 15 20 20 C 1.47078 * 118.24014 * 51.45759 * 16 15 14 21 21 C 1.46895 * 111.00135 * 304.30477 * 13 12 11 22 22 C 1.53005 * 109.46661 * 60.00487 * 12 11 10 23 23 C 1.52993 * 109.47032 * 299.99719 * 22 12 11 24 24 H 0.96996 * 120.00684 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47579 * 300.00571 * 9 7 2 26 26 H 1.08999 * 109.47407 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.46741 * 60.00109 * 10 9 7 28 28 H 1.09004 * 109.46972 * 179.97438 * 11 10 9 29 29 H 1.08997 * 109.47490 * 60.00202 * 11 10 9 30 30 H 1.08997 * 109.47412 * 300.00820 * 12 11 10 31 31 H 1.09004 * 109.49233 * 67.29089 * 14 13 12 32 32 H 1.09001 * 109.51632 * 307.23044 * 14 13 12 33 33 H 1.08998 * 109.63189 * 186.45934 * 15 14 13 34 34 H 1.09002 * 109.79131 * 65.97643 * 15 14 13 35 35 H 0.97005 * 120.00568 * 174.64720 * 18 17 16 36 36 H 0.97003 * 119.99943 * 354.64878 * 18 17 16 37 37 H 1.09000 * 109.62724 * 68.24899 * 20 16 15 38 38 H 1.08994 * 109.63000 * 188.83211 * 20 16 15 39 39 H 1.08998 * 109.49389 * 292.70986 * 21 13 12 40 40 H 1.09003 * 109.49586 * 52.75866 * 21 13 12 41 41 H 1.08999 * 109.47407 * 59.99830 * 22 12 11 42 42 H 1.09001 * 109.46741 * 179.97438 * 22 12 11 43 43 H 1.08998 * 109.47850 * 300.00393 * 23 22 12 44 44 H 1.09004 * 109.47206 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 3.1241 -3.5803 -1.2517 12 6 2.2436 -3.6609 -2.5004 13 7 3.0873 -3.5831 -3.7004 14 6 2.2740 -3.6569 -4.9214 15 6 3.1969 -3.7551 -6.1407 16 7 4.1511 -2.6368 -6.0957 17 6 4.3296 -1.8364 -7.1653 18 7 3.5546 -1.9881 -8.2574 19 8 5.1865 -0.9740 -7.1429 20 6 4.9098 -2.4189 -4.8548 21 6 3.9147 -2.3694 -3.6844 22 6 1.2493 -2.4980 -2.4991 23 6 0.3706 -2.5797 -1.2493 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 0.8896 26 1 1.7005 -4.6060 -0.0023 27 1 2.8728 -3.6046 0.8877 28 1 3.8328 -4.4086 -1.2524 29 1 3.6691 -2.6364 -1.2517 30 1 1.6986 -4.6048 -2.5004 31 1 1.6578 -2.7614 -5.0027 32 1 1.6324 -4.5371 -4.8790 33 1 2.6048 -3.6948 -7.0539 34 1 3.7392 -4.7004 -6.1179 35 1 3.6296 -1.3637 -8.9960 36 1 2.9216 -2.7216 -8.3049 37 1 5.6134 -3.2382 -4.7072 38 1 5.4507 -1.4747 -4.9173 39 1 3.2756 -1.4921 -3.7831 40 1 4.4634 -2.3156 -2.7441 41 1 1.7942 -1.5540 -2.4990 42 1 0.6223 -2.5551 -3.3888 43 1 -0.1744 -3.5236 -1.2492 44 1 -0.3380 -1.7514 -1.2486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173335285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:25 Heat of formation + Delta-G solvation = -48.748754 kcal Electronic energy + Delta-G solvation = -23808.764200 eV Core-core repulsion = 20566.701748 eV Total energy + Delta-G solvation = -3242.062452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48513 -40.25370 -38.04356 -35.69967 -34.65218 -33.79691 -32.07088 -31.18000 -30.43078 -27.61507 -26.33833 -24.88020 -23.59019 -22.84722 -21.82045 -20.69699 -19.96687 -19.22451 -17.97170 -17.69279 -16.91101 -16.65133 -16.39440 -15.97616 -15.80369 -15.56642 -15.29033 -15.01861 -14.83705 -14.55519 -14.10483 -13.81747 -13.25035 -13.19030 -12.94559 -12.87106 -12.56776 -12.52199 -12.40152 -12.32472 -12.23149 -11.86372 -11.53745 -11.48350 -11.34705 -10.91549 -10.73335 -10.69384 -10.49913 -10.32933 -9.69879 -9.07376 -8.05469 -6.14086 1.33295 1.38381 1.46088 1.77944 2.11458 2.41706 2.98325 3.22512 3.23349 3.92594 3.94866 4.05088 4.20812 4.25208 4.27791 4.44494 4.51120 4.55181 4.73723 4.76035 4.78782 4.82378 4.91146 4.93346 4.95515 5.01917 5.10711 5.16025 5.29324 5.41308 5.45068 5.56554 5.64610 5.68452 5.73653 5.83409 5.94805 5.99721 6.18290 6.23583 6.25241 6.46447 6.90709 6.97050 7.51684 7.59348 8.99057 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.005599 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.061270 B = 4999.247173 C = 5781.396474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.930 3.070 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.497 4.497 8 H 0.052 0.948 9 C 0.037 3.963 10 C -0.100 4.100 11 C -0.094 4.094 12 C 0.101 3.899 13 N -0.520 5.520 14 C 0.034 3.966 15 C 0.120 3.880 16 N -0.629 5.629 17 C 0.700 3.300 18 N -0.848 5.848 19 O -0.648 6.648 20 C 0.141 3.859 21 C 0.041 3.959 22 C -0.116 4.116 23 C -0.099 4.099 24 H 0.255 0.745 25 H -0.013 1.013 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.023 0.977 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.420 0.580 36 H 0.412 0.588 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.013 0.987 40 H 0.088 0.912 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.030 0.970 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 -11.454 -14.477 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.757 3.243 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.018 3.982 10 C -0.138 4.138 11 C -0.132 4.132 12 C -0.007 4.007 13 N -0.243 5.243 14 C -0.095 4.095 15 C -0.002 4.002 16 N -0.367 5.367 17 C 0.400 3.600 18 N -0.419 5.419 19 O -0.530 6.530 20 C 0.017 3.983 21 C -0.088 4.088 22 C -0.155 4.155 23 C -0.138 4.138 24 H 0.064 0.936 25 H 0.006 0.994 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.042 0.958 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.253 0.747 36 H 0.245 0.755 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.031 0.969 40 H 0.107 0.893 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.947 -11.258 -14.323 18.878 hybrid contribution -0.862 2.218 0.155 2.385 sum 4.086 -9.040 -14.167 17.295 Atomic orbital electron populations 1.70008 1.06906 1.26326 1.52727 1.25540 0.95350 1.01468 0.95856 0.85927 0.79680 0.81504 0.77167 1.19038 1.21650 1.20924 1.21433 0.92637 0.91487 1.47974 0.92997 1.18711 0.93269 0.93145 0.93050 1.21440 0.97654 0.97540 0.97172 1.21434 0.97406 1.01232 0.93094 1.21614 0.92333 0.97427 0.89333 1.62338 1.23437 1.36432 1.02107 1.22592 0.95259 1.01838 0.89834 1.21964 0.90567 0.89424 0.98245 1.47396 1.44442 1.32311 1.12544 1.16128 0.81526 0.81003 0.81351 1.42910 1.43665 1.36249 1.19115 1.90914 1.38991 1.39719 1.83386 1.21604 0.93205 1.02521 0.80956 1.22553 0.95897 0.91108 0.99211 1.21821 0.97856 0.99131 0.96704 1.21296 0.98291 0.98495 0.95686 0.93571 0.99449 0.92728 0.93594 0.91053 0.92989 0.89416 0.95836 0.87483 0.87304 0.88771 0.74740 0.75506 0.89387 0.90788 0.96892 0.89347 0.94363 0.94057 0.95117 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.23 11.32 21.45 0.24 -52.98 16 2 C 0.02 0.85 5.30 84.65 0.45 1.30 16 3 Si 0.93 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.50 -26.27 6.61 25.60 0.17 -26.10 16 8 H 0.05 2.73 6.71 -2.91 -0.02 2.71 16 9 C 0.04 1.77 2.59 -11.54 -0.03 1.74 16 10 C -0.10 -3.83 5.41 30.60 0.17 -3.67 16 11 C -0.09 -3.19 4.62 30.59 0.14 -3.04 16 12 C 0.10 3.17 2.29 44.92 0.10 3.27 16 13 N -0.52 -13.88 4.65 -869.09 -4.04 -17.92 16 14 C 0.03 0.71 4.99 86.38 0.43 1.14 16 15 C 0.12 1.93 6.59 86.35 0.57 2.50 16 16 N -0.63 -14.89 3.00 -835.07 -2.51 -17.40 16 17 C 0.70 18.54 8.58 179.06 1.54 20.07 16 18 N -0.85 -13.40 8.79 -184.75 -1.62 -15.03 16 19 O -0.65 -23.64 16.66 -4.00 -0.07 -23.71 16 20 C 0.14 3.77 6.61 86.50 0.57 4.34 16 21 C 0.04 1.25 4.83 86.54 0.42 1.67 16 22 C -0.12 -4.55 4.30 30.59 0.13 -4.41 16 23 C -0.10 -4.49 5.23 30.60 0.16 -4.33 16 24 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.05 1.99 4.67 -2.39 -0.01 1.97 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.02 0.61 6.72 -2.38 -0.02 0.59 16 32 H 0.11 1.83 8.11 -2.39 -0.02 1.81 16 33 H 0.11 0.99 5.63 -2.39 -0.01 0.97 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.42 5.67 8.93 -92.70 -0.83 4.84 16 36 H 0.41 3.66 6.33 -92.71 -0.59 3.07 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.07 2.27 7.09 -2.39 -0.02 2.25 16 39 H 0.01 0.47 6.80 -2.39 -0.02 0.45 16 40 H 0.09 2.79 5.83 -2.39 -0.01 2.77 16 41 H 0.04 1.76 5.75 -2.39 -0.01 1.74 16 42 H 0.04 1.50 6.57 -2.39 -0.02 1.48 16 43 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.05 2.69 6.07 -2.38 -0.01 2.68 16 Total: -1.00 -69.30 321.89 -1.55 -70.84 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -0.39 Total: 15.28 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 4.82 Total: -5.53 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -7.93 Total: -103.34 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.07 Total: -23.71 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -69.30 -1.55 -70.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.092 kcal (2) G-P(sol) polarization free energy of solvation -69.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds