Wall clock time and date at job start Tue Mar 31 2020 05:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99910 * 2 1 4 4 H 1.48492 * 109.47177 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.46982 * 119.99863 * 3 2 1 6 6 H 1.48499 * 109.47011 * 239.99543 * 3 2 1 7 7 C 1.37879 * 120.00045 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84801 * 5.10131 * 7 2 1 9 9 C 1.53670 * 108.30674 * 231.38219 * 8 7 2 10 10 C 1.52960 * 109.32356 * 305.13593 * 9 8 7 11 11 H 1.08992 * 109.35883 * 303.66382 * 10 9 8 12 12 N 1.46503 * 109.41292 * 183.83453 * 10 9 8 13 13 C 1.34773 * 119.99667 * 84.64969 * 12 10 9 14 14 O 1.21284 * 120.00419 * 359.97438 * 13 12 10 15 15 C 1.50700 * 119.99775 * 180.02562 * 13 12 10 16 16 N 1.46909 * 109.46868 * 173.68531 * 15 13 12 17 17 C 1.46959 * 110.99729 * 170.05843 * 16 15 13 18 18 C 1.53046 * 109.36417 * 183.19010 * 17 16 15 19 19 N 1.46958 * 109.36280 * 301.60035 * 18 17 16 20 20 C 1.46959 * 110.88269 * 59.32059 * 19 18 17 21 21 C 1.46947 * 111.00146 * 293.85620 * 16 15 13 22 22 C 1.52963 * 109.81509 * 63.73083 * 10 9 8 23 23 C 1.51264 * 120.85001 * 184.82130 * 7 2 1 24 24 H 0.97001 * 119.99731 * 173.92394 * 1 2 3 25 25 H 1.08994 * 109.62850 * 351.03647 * 8 7 2 26 26 H 1.08996 * 109.62807 * 111.61354 * 8 7 2 27 27 H 1.08998 * 109.40997 * 185.25005 * 9 8 7 28 28 H 1.08996 * 109.63872 * 65.16862 * 9 8 7 29 29 H 0.96996 * 119.99839 * 264.65208 * 12 10 9 30 30 H 1.09003 * 109.46999 * 293.68385 * 15 13 12 31 31 H 1.08997 * 109.47237 * 53.68774 * 15 13 12 32 32 H 1.09000 * 109.48934 * 303.15679 * 17 16 15 33 33 H 1.08994 * 109.48965 * 63.22248 * 17 16 15 34 34 H 1.08993 * 109.49001 * 181.63413 * 18 17 16 35 35 H 1.08994 * 109.50699 * 61.57581 * 18 17 16 36 36 H 1.00897 * 110.99901 * 295.45016 * 19 18 17 37 37 H 1.09000 * 109.48934 * 180.71191 * 20 19 18 38 38 H 1.08994 * 109.50440 * 60.65886 * 20 19 18 39 39 H 1.09001 * 109.49286 * 296.78519 * 21 16 15 40 40 H 1.09004 * 109.48979 * 56.84915 * 21 16 15 41 41 H 1.08994 * 109.48317 * 176.41853 * 22 10 9 42 42 H 1.09003 * 109.47968 * 56.38264 * 22 10 9 43 43 H 1.09001 * 109.62774 * 248.38897 * 23 7 2 44 44 H 1.09003 * 109.62947 * 8.95556 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6964 -1.2124 7 6 2.0046 -1.1941 0.0005 8 6 1.2722 -2.5126 -0.1144 9 6 1.7443 -3.4280 1.0261 10 6 3.2685 -3.5483 0.9806 11 1 3.5731 -3.9116 -0.0008 12 7 3.7134 -4.4921 2.0090 13 6 3.7230 -5.8148 1.7507 14 8 3.3630 -6.2238 0.6672 15 6 4.1801 -6.7857 2.8088 16 7 3.9560 -8.1604 2.3415 17 6 4.5999 -9.1323 3.2363 18 6 4.4114 -10.5428 2.6732 19 7 2.9756 -10.8259 2.5385 20 6 2.3318 -9.8540 1.6438 21 6 2.5204 -8.4434 2.2069 22 6 3.9044 -2.1808 1.2363 23 6 3.5131 -1.2187 0.1097 24 1 -0.4850 -0.8354 -0.0889 25 1 0.1987 -2.3438 -0.0293 26 1 1.4980 -2.9744 -1.0755 27 1 1.2980 -4.4152 0.9066 28 1 1.4413 -3.0056 1.9841 29 1 4.0009 -4.1650 2.8757 30 1 5.2421 -6.6369 3.0040 31 1 3.6150 -6.6169 3.7254 32 1 5.6643 -8.9093 3.3098 33 1 4.1462 -9.0719 4.2255 34 1 4.8630 -11.2679 3.3501 35 1 4.8888 -10.6114 1.6958 36 1 2.5240 -10.8413 3.4406 37 1 1.2674 -10.0770 1.5702 38 1 2.7851 -9.9143 0.6544 39 1 2.0430 -8.3752 3.1844 40 1 2.0687 -7.7183 1.5299 41 1 4.9890 -2.2840 1.2659 42 1 3.5503 -1.7877 2.1894 43 1 3.9427 -1.5628 -0.8312 44 1 3.8800 -0.2182 0.3386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220095175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:44 Heat of formation + Delta-G solvation = -41.768207 kcal Electronic energy + Delta-G solvation = -22751.814273 eV Core-core repulsion = 19510.054520 eV Total energy + Delta-G solvation = -3241.759753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06012 -38.76707 -36.81939 -34.35247 -33.84921 -31.63903 -31.12563 -29.75444 -28.55161 -26.61786 -24.18915 -23.60398 -22.19863 -21.51015 -20.68206 -20.01019 -19.51866 -17.02543 -16.71855 -16.34801 -15.79357 -15.52073 -14.96791 -14.85375 -14.59275 -14.38899 -13.85469 -13.78032 -13.27504 -12.99455 -12.94485 -12.47572 -12.34920 -12.10143 -11.75255 -11.65994 -11.54333 -11.33979 -11.14190 -11.08353 -10.69408 -10.58282 -10.19170 -10.07100 -9.69025 -9.58665 -9.32667 -8.78435 -8.66267 -8.47498 -8.42615 -8.22976 -6.44862 -4.04188 2.89083 3.18964 3.37056 3.40294 3.59341 3.81949 4.04555 4.45030 4.72335 4.77175 4.84243 4.91826 5.05326 5.08958 5.14732 5.22037 5.23605 5.34606 5.42329 5.61615 5.71494 5.79600 5.80643 5.96091 6.09528 6.37795 6.43751 6.59895 6.63412 6.65319 6.69896 6.73520 6.85403 6.89896 6.97031 7.09438 7.14125 7.29794 7.32368 7.57884 7.86507 8.04349 8.29341 8.55729 8.85395 9.58902 10.92629 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042691 B = 0.003367 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.711856 B = 8313.745593 C = 8726.553944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.034 3.966 3 Si 1.063 2.937 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.569 4.569 8 C 0.004 3.996 9 C -0.110 4.110 10 C 0.158 3.842 11 H 0.077 0.923 12 N -0.727 5.727 13 C 0.508 3.492 14 O -0.524 6.524 15 C 0.035 3.965 16 N -0.515 5.515 17 C 0.016 3.984 18 C 0.061 3.939 19 N -0.688 5.688 20 C 0.062 3.938 21 C 0.013 3.987 22 C -0.113 4.113 23 C -0.003 4.003 24 H 0.272 0.728 25 H 0.037 0.963 26 H 0.008 0.992 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.392 0.608 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.336 0.664 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.099 0.901 41 H 0.037 0.963 42 H 0.055 0.945 43 H 0.015 0.985 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.968 -15.615 9.657 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.171 4.171 3 Si 0.892 3.108 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.588 4.588 8 C -0.035 4.035 9 C -0.149 4.149 10 C 0.055 3.945 11 H 0.095 0.905 12 N -0.378 5.378 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.096 4.096 16 N -0.240 5.240 17 C -0.113 4.113 18 C -0.070 4.070 19 N -0.316 5.316 20 C -0.068 4.068 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.041 4.041 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.225 0.775 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.153 0.847 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.044 0.956 40 H 0.117 0.883 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.781 -14.821 7.958 18.976 hybrid contribution 0.009 -0.495 1.927 1.990 sum 8.790 -15.316 9.885 20.238 Atomic orbital electron populations 1.70816 1.06860 1.31234 1.45434 1.25773 0.96254 1.01843 0.93207 0.83608 0.74812 0.75563 0.76863 1.21319 1.21260 1.21115 1.21035 0.90936 0.92606 1.54265 1.19480 0.97301 0.94003 0.92671 1.21962 0.93758 0.98147 1.01057 1.20967 0.95261 0.87791 0.90489 0.90487 1.46403 1.67116 1.06242 1.18050 1.20347 0.78524 0.82995 0.88910 1.90687 1.46717 1.77908 1.24590 1.22018 1.02695 0.89105 0.95770 1.61746 1.13121 1.00557 1.48562 1.22900 1.00186 0.94485 0.93754 1.22096 0.89561 0.93017 1.02282 1.60743 1.03232 1.50820 1.16786 1.22086 0.99477 0.87577 0.97664 1.22983 0.87810 1.00612 1.00176 1.21859 0.96823 0.94877 1.01581 1.19504 0.97266 0.94123 0.93231 0.91527 0.94445 0.97316 0.94919 0.93375 0.77517 0.88024 0.92487 0.90087 0.95072 0.90253 0.89809 0.84748 0.90204 0.89633 0.95579 0.88291 0.94422 0.92604 0.96701 0.95235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.76 13.66 55.43 0.76 -26.01 16 2 C 0.03 0.95 5.46 -17.82 -0.10 0.85 16 3 Si 1.06 24.57 27.19 -169.99 -4.62 19.94 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.57 -14.96 5.50 -98.92 -0.54 -15.50 16 8 C 0.00 0.09 5.99 -27.26 -0.16 -0.07 16 9 C -0.11 -2.41 5.52 -26.40 -0.15 -2.56 16 10 C 0.16 3.08 2.34 -67.97 -0.16 2.92 16 11 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 12 N -0.73 -11.25 5.07 -53.85 -0.27 -11.52 16 13 C 0.51 8.01 7.35 -10.99 -0.08 7.93 16 14 O -0.52 -10.45 14.33 5.55 0.08 -10.37 16 15 C 0.04 0.41 5.45 -4.97 -0.03 0.38 16 16 N -0.51 -6.18 4.41 -235.91 -1.04 -7.22 16 17 C 0.02 0.15 5.60 -3.77 -0.02 0.13 16 18 C 0.06 0.52 6.72 -3.77 -0.03 0.49 16 19 N -0.69 -6.45 6.91 -113.64 -0.79 -7.23 16 20 C 0.06 0.66 6.72 -3.77 -0.03 0.64 16 21 C 0.01 0.16 5.26 -3.77 -0.02 0.14 16 22 C -0.11 -2.19 5.40 -26.63 -0.14 -2.34 16 23 C 0.00 -0.07 5.56 -27.49 -0.15 -0.22 16 24 H 0.27 7.99 6.36 -40.82 -0.26 7.73 16 25 H 0.04 0.99 5.81 -51.93 -0.30 0.69 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.39 4.82 8.60 -40.82 -0.35 4.47 16 30 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 31 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.34 2.69 8.89 -39.29 -0.35 2.34 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 1.51 6.07 -51.93 -0.32 1.20 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.03 0.65 5.25 -51.93 -0.27 0.38 16 LS Contribution 336.22 15.07 5.07 5.07 Total: -1.00 -31.09 336.22 -9.79 -40.88 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.37 Total: 3.67 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.61 Total: -7.20 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -1.34 Total: -51.98 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -4.62 Total: 19.94 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.09 -9.79 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220095175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.889 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds