Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48500 * 109.46924 * 270.00033 * 3 2 1 5 5 H 1.48496 * 109.47164 * 29.99941 * 3 2 1 6 6 H 1.48503 * 109.47039 * 150.00585 * 3 2 1 7 7 C 1.37874 * 119.99960 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.85149 * 359.97438 * 7 2 1 9 9 C 1.53228 * 108.53825 * 231.34958 * 8 7 2 10 10 C 1.52958 * 109.40309 * 305.37013 * 9 8 7 11 11 H 1.09001 * 109.41503 * 303.49052 * 10 9 8 12 12 N 1.46496 * 109.35886 * 183.66850 * 10 9 8 13 13 C 1.34774 * 120.00167 * 84.67938 * 12 10 9 14 14 O 1.21284 * 120.00041 * 0.02562 * 13 12 10 15 15 C 1.50706 * 120.00379 * 179.97438 * 13 12 10 16 16 N 1.46904 * 109.49901 * 37.75991 * 15 13 12 17 17 C 1.53116 * 109.50587 * 277.64040 * 15 13 12 18 18 C 1.53118 * 109.15750 * 297.71050 * 17 15 13 19 19 C 1.53036 * 109.28052 * 302.34531 * 18 17 15 20 20 N 1.46850 * 109.52241 * 59.17875 * 19 18 17 21 21 C 1.46839 * 111.19917 * 298.26060 * 20 19 18 22 22 C 1.52957 * 109.81769 * 63.59789 * 10 9 8 23 23 C 1.51302 * 120.84541 * 180.02562 * 7 2 1 24 24 H 0.96997 * 119.99826 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.63039 * 111.63292 * 8 7 2 26 26 H 1.09006 * 109.62693 * 351.05907 * 8 7 2 27 27 H 1.09000 * 109.48567 * 185.39069 * 9 8 7 28 28 H 1.09001 * 109.48723 * 65.35078 * 9 8 7 29 29 H 0.97004 * 120.00512 * 264.68349 * 12 10 9 30 30 H 1.00897 * 111.00616 * 59.99407 * 16 15 13 31 31 H 1.00902 * 111.00010 * 183.95269 * 16 15 13 32 32 H 1.08998 * 109.52341 * 57.61270 * 17 15 13 33 33 H 1.09003 * 109.52256 * 177.80685 * 17 15 13 34 34 H 1.08998 * 109.49910 * 182.40738 * 18 17 15 35 35 H 1.08992 * 109.53687 * 62.30983 * 18 17 15 36 36 H 1.09001 * 109.46196 * 299.16614 * 19 18 17 37 37 H 1.09000 * 109.46682 * 179.19983 * 19 18 17 38 38 H 1.00903 * 110.99329 * 62.35830 * 20 19 18 39 39 H 1.08999 * 109.46327 * 301.72705 * 21 20 19 40 40 H 1.09004 * 109.45384 * 181.74995 * 21 20 19 41 41 H 1.08995 * 109.48586 * 56.38313 * 22 10 9 42 42 H 1.09000 * 109.48309 * 176.40807 * 22 10 9 43 43 H 1.09004 * 109.63731 * 8.93876 * 23 7 2 44 44 H 1.09002 * 109.62154 * 248.36350 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8233 -3.3828 1.1336 10 6 3.3403 -3.5072 0.9819 11 1 3.5739 -3.9123 -0.0027 12 7 3.8594 -4.4075 2.0144 13 6 3.8522 -5.7400 1.8124 14 8 3.4164 -6.1938 0.7755 15 6 4.3868 -6.6661 2.8743 16 7 4.0193 -6.1544 4.2014 17 6 5.9116 -6.7477 2.7611 18 6 6.2834 -7.3375 1.3979 19 6 5.6321 -8.7143 1.2484 20 7 4.1740 -8.5825 1.3635 21 6 3.7903 -8.0623 2.6819 22 6 3.9911 -2.1313 1.1330 23 6 3.5174 -1.2164 0.0000 24 1 -0.4850 0.8400 0.0004 25 1 1.4196 -3.0191 -0.9551 26 1 0.2037 -2.3409 0.1595 27 1 1.3710 -4.3735 1.0885 28 1 1.5907 -2.9202 2.0928 29 1 4.2083 -4.0446 2.8436 30 1 3.0171 -6.0931 4.3006 31 1 4.4209 -6.7228 4.9320 32 1 6.3377 -5.7488 2.8543 33 1 6.3019 -7.3867 3.5533 34 1 7.3665 -7.4379 1.3282 35 1 5.9273 -6.6785 0.6062 36 1 5.9998 -9.3770 2.0318 37 1 5.8833 -9.1309 0.2730 38 1 3.8040 -8.0035 0.6246 39 1 4.1667 -8.7281 3.4586 40 1 2.7038 -8.0053 2.7475 41 1 3.7072 -1.6982 2.0921 42 1 5.0752 -2.2350 1.0877 43 1 3.8986 -0.2078 0.1604 44 1 3.8782 -1.5997 -0.9545 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220095437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = -52.873791 kcal Electronic energy + Delta-G solvation = -23593.904879 eV Core-core repulsion = 20351.663552 eV Total energy + Delta-G solvation = -3242.241327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.74743 -38.01761 -36.42117 -34.57218 -33.44097 -31.74083 -31.32560 -29.64321 -28.37717 -27.31896 -23.81748 -23.68616 -21.96105 -21.65131 -21.17630 -19.73061 -19.12469 -16.83557 -16.43360 -16.03802 -15.80488 -15.45645 -14.92510 -14.84963 -14.45703 -14.29003 -13.66538 -13.25187 -13.08644 -12.84063 -12.74711 -12.43341 -12.30886 -12.11249 -11.99371 -11.59895 -11.43188 -11.20083 -11.02780 -10.86604 -10.80349 -10.75707 -10.27663 -9.93986 -9.63033 -9.53889 -9.48523 -9.04538 -8.81824 -8.48340 -8.27616 -8.04056 -6.10034 -4.01581 2.80544 3.25937 3.33569 3.34482 3.49756 4.03637 4.36742 4.47974 4.49315 4.69724 4.85479 4.93959 5.10057 5.17554 5.24422 5.34995 5.56477 5.61635 5.67840 5.71498 5.80231 5.87568 5.91418 6.07993 6.16143 6.47252 6.51929 6.63642 6.71560 6.76207 6.80776 7.02275 7.04309 7.07733 7.09362 7.23322 7.37840 7.60172 7.65055 7.76334 7.84643 7.94760 8.38972 8.58826 8.96719 9.53597 10.99439 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033053 B = 0.004214 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.921806 B = 6643.363476 C = 6783.466286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.488 4.488 8 C 0.012 3.988 9 C -0.111 4.111 10 C 0.151 3.849 11 H 0.076 0.924 12 N -0.704 5.704 13 C 0.525 3.475 14 O -0.548 6.548 15 C 0.061 3.939 16 N -0.833 5.833 17 C -0.099 4.099 18 C -0.162 4.162 19 C 0.058 3.942 20 N -0.688 5.688 21 C 0.051 3.949 22 C -0.112 4.112 23 C -0.018 4.018 24 H 0.264 0.736 25 H 0.005 0.995 26 H 0.058 0.942 27 H 0.033 0.967 28 H 0.049 0.951 29 H 0.402 0.598 30 H 0.349 0.651 31 H 0.347 0.653 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.370 0.630 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.297 -13.011 8.386 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.507 4.507 8 C -0.026 4.026 9 C -0.150 4.150 10 C 0.049 3.951 11 H 0.094 0.906 12 N -0.352 5.352 13 C 0.309 3.691 14 O -0.426 6.426 15 C -0.036 4.036 16 N -0.365 5.365 17 C -0.137 4.137 18 C -0.202 4.202 19 C -0.072 4.072 20 N -0.328 5.328 21 C -0.082 4.082 22 C -0.150 4.150 23 C -0.056 4.056 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.237 0.763 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.199 0.801 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.072 -13.146 7.550 18.772 hybrid contribution 0.396 1.183 0.655 1.409 sum 11.469 -11.963 8.204 18.492 Atomic orbital electron populations 1.69843 1.06156 1.26888 1.49812 1.24855 0.94717 0.98530 0.94587 0.86685 0.79924 0.83359 0.78507 1.20409 1.21648 1.18994 1.20049 0.89230 0.91574 1.49834 1.19347 0.98626 0.92675 0.91955 1.21935 0.93203 0.98364 1.01520 1.21088 0.94980 0.88721 0.90336 0.90604 1.46354 1.61738 1.05785 1.21348 1.20173 0.78116 0.83434 0.87382 1.90467 1.48033 1.75632 1.28481 1.21881 0.97416 0.94760 0.89574 1.58773 1.17335 1.58112 1.02325 1.21495 0.92072 1.02188 0.97970 1.22324 1.01364 0.99162 0.97355 1.21970 0.88220 0.95053 1.01935 1.60750 1.10277 1.56552 1.05235 1.22576 1.00447 0.91887 0.93286 1.21819 0.96701 0.94826 1.01676 1.19770 0.96912 0.95389 0.93494 0.92594 0.97666 0.92378 0.94870 0.93263 0.76294 0.83749 0.83957 0.90817 0.91087 0.91151 0.91258 0.91596 0.90812 0.80086 0.91028 0.90799 0.92533 0.94564 0.94397 0.96326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 12.73 55.43 0.71 -24.91 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.79 27.53 -169.99 -4.68 16.11 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -5.93 6.10 56.52 0.34 -5.59 16 7 C -0.49 -12.79 5.52 -98.91 -0.55 -13.33 16 8 C 0.01 0.30 5.97 -27.49 -0.16 0.14 16 9 C -0.11 -2.44 5.50 -26.64 -0.15 -2.59 16 10 C 0.15 2.95 2.35 -67.98 -0.16 2.80 16 11 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 12 N -0.70 -11.15 4.97 -53.85 -0.27 -11.41 16 13 C 0.52 8.08 5.63 -10.98 -0.06 8.02 16 14 O -0.55 -10.18 12.81 5.55 0.07 -10.11 16 15 C 0.06 0.69 0.89 -132.67 -0.12 0.57 16 16 N -0.83 -7.55 8.21 -0.12 0.00 -7.55 16 17 C -0.10 -1.00 5.04 -26.61 -0.13 -1.14 16 18 C -0.16 -1.74 5.79 -26.65 -0.15 -1.90 16 19 C 0.06 0.62 6.55 -3.83 -0.03 0.60 16 20 N -0.69 -8.91 6.81 -113.82 -0.78 -9.68 16 21 C 0.05 0.58 5.45 -3.84 -0.02 0.56 16 22 C -0.11 -2.19 5.40 -26.68 -0.14 -2.33 16 23 C -0.02 -0.40 5.59 -27.52 -0.15 -0.56 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 26 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.40 5.70 8.05 -40.82 -0.33 5.37 16 30 H 0.35 3.21 8.99 -39.29 -0.35 2.86 16 31 H 0.35 2.36 8.98 -39.29 -0.35 2.01 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.93 7.09 -51.93 -0.37 0.56 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.37 5.72 5.69 -39.29 -0.22 5.49 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.04 0.86 4.60 -51.93 -0.24 0.62 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -28.82 330.73 -9.20 -38.02 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.31 Total: 11.75 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.93 Total: -7.20 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.34 Total: -53.55 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.68 Total: 16.11 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.82 -9.20 -38.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220095437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.855 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds