Wall clock time and date at job start Tue Mar 31 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99775 * 2 1 4 4 H 1.48499 * 109.46986 * 269.99827 * 3 2 1 5 5 H 1.48493 * 109.46997 * 30.00358 * 3 2 1 6 6 H 1.48507 * 109.46788 * 150.00310 * 3 2 1 7 7 C 1.37880 * 120.00381 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.85130 * 180.02562 * 7 2 1 9 9 C 1.53231 * 108.53606 * 231.32714 * 8 7 2 10 10 C 1.52952 * 109.40525 * 305.37232 * 9 8 7 11 11 H 1.09000 * 109.35919 * 303.52764 * 10 9 8 12 12 N 1.46501 * 109.41398 * 183.70546 * 10 9 8 13 13 C 1.34779 * 119.99960 * 84.65023 * 12 10 9 14 14 O 1.21283 * 119.99901 * 359.97438 * 13 12 10 15 15 C 1.50697 * 120.00007 * 179.97438 * 13 12 10 16 16 N 1.46906 * 109.53347 * 34.89930 * 15 13 12 17 17 C 1.53123 * 109.50268 * 154.99658 * 15 13 12 18 18 C 1.53120 * 109.15816 * 177.59719 * 17 15 13 19 19 C 1.53042 * 109.27821 * 302.34409 * 18 17 15 20 20 N 1.46848 * 109.52160 * 59.18425 * 19 18 17 21 21 C 1.46847 * 111.19556 * 298.25623 * 20 19 18 22 22 C 1.52955 * 109.81784 * 63.59786 * 10 9 8 23 23 C 1.51270 * 120.84710 * 359.97438 * 7 2 1 24 24 H 0.96999 * 120.00544 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.62710 * 351.04143 * 8 7 2 26 26 H 1.09004 * 109.62324 * 111.41860 * 8 7 2 27 27 H 1.09001 * 109.47565 * 185.39447 * 9 8 7 28 28 H 1.08993 * 109.48427 * 65.35524 * 9 8 7 29 29 H 0.96996 * 120.00164 * 264.64657 * 12 10 9 30 30 H 1.00890 * 110.99959 * 300.10007 * 16 15 13 31 31 H 1.00899 * 110.99851 * 64.05759 * 16 15 13 32 32 H 1.08996 * 109.51946 * 57.69202 * 17 15 13 33 33 H 1.08996 * 109.57408 * 297.53517 * 17 15 13 34 34 H 1.08997 * 109.49895 * 182.40861 * 18 17 15 35 35 H 1.08998 * 109.50437 * 62.28864 * 18 17 15 36 36 H 1.08995 * 109.46577 * 299.16647 * 19 18 17 37 37 H 1.08994 * 109.45929 * 179.19867 * 19 18 17 38 38 H 1.00901 * 111.00066 * 62.35005 * 20 19 18 39 39 H 1.09000 * 109.46087 * 181.75730 * 21 20 19 40 40 H 1.09004 * 109.46240 * 301.72671 * 21 20 19 41 41 H 1.09008 * 109.48419 * 56.38043 * 22 10 9 42 42 H 1.09000 * 109.48790 * 176.41970 * 22 10 9 43 43 H 1.09001 * 109.62429 * 8.95538 * 23 7 2 44 44 H 1.08997 * 109.62391 * 248.39037 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 6 3.5170 -1.2164 0.0000 9 6 3.9911 -2.1306 -1.1346 10 6 3.3404 -3.5066 -0.9842 11 1 3.5741 -3.9110 0.0006 12 7 3.8608 -4.4068 -2.0162 13 6 5.0182 -5.0669 -1.8134 14 8 5.6292 -4.9152 -0.7768 15 6 5.5532 -5.9933 -2.8748 16 7 5.2344 -5.4541 -4.2036 17 6 7.0719 -6.1194 -2.7250 18 6 7.5993 -7.1083 -3.7683 19 6 6.9003 -8.4573 -3.5846 20 7 5.4503 -8.2835 -3.7379 21 6 4.9136 -7.3746 -2.7170 22 6 1.8235 -3.3822 -1.1359 23 6 1.2677 -2.5152 -0.0005 24 1 -0.4851 0.8400 0.0004 25 1 3.8982 -0.2076 -0.1590 26 1 3.8772 -1.5974 0.9557 27 1 5.0752 -2.2342 -1.0890 28 1 3.7072 -1.6970 -2.0935 29 1 3.3723 -4.5278 -2.8454 30 1 4.2374 -5.3615 -4.3265 31 1 5.7012 -4.5729 -4.3577 32 1 7.3104 -6.4826 -1.7255 33 1 7.5361 -5.1453 -2.8790 34 1 8.6742 -7.2348 -3.6390 35 1 7.3950 -6.7257 -4.7683 36 1 7.1163 -8.8457 -2.5894 37 1 7.2633 -9.1595 -4.3350 38 1 5.2209 -7.9607 -4.6660 39 1 3.8335 -7.2905 -2.8373 40 1 5.1389 -7.7681 -1.7258 41 1 1.5907 -2.9190 -2.0948 42 1 1.3711 -4.3729 -1.0913 43 1 0.2036 -2.3408 -0.1599 44 1 1.4200 -3.0192 0.9538 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220095438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:39 Heat of formation + Delta-G solvation = -57.347242 kcal Electronic energy + Delta-G solvation = -23271.869893 eV Core-core repulsion = 20029.434582 eV Total energy + Delta-G solvation = -3242.435311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59870 -38.33723 -36.69237 -34.31216 -33.43456 -31.79380 -31.31386 -29.73550 -28.87942 -27.33418 -24.10435 -23.66633 -22.20251 -21.58832 -20.62584 -19.72465 -19.26422 -17.42791 -16.48844 -16.06687 -15.89162 -15.67641 -15.15771 -14.50051 -14.49210 -14.14936 -14.07795 -13.31094 -12.99575 -12.84276 -12.75160 -12.30999 -12.25979 -12.13184 -12.08584 -11.74048 -11.45327 -11.10878 -11.05773 -10.95153 -10.87136 -10.78582 -10.41067 -10.14042 -10.04689 -9.69175 -9.13083 -9.04818 -8.82577 -8.52807 -8.45976 -8.36373 -6.15997 -4.06954 2.75021 3.21876 3.30853 3.32540 3.34777 4.07223 4.26791 4.33859 4.49413 4.70300 4.74137 4.91718 5.07309 5.12566 5.28161 5.35988 5.60440 5.64462 5.67966 5.71066 5.79642 5.80227 5.91553 6.10394 6.14437 6.35711 6.39079 6.58785 6.63071 6.67142 6.79650 6.81540 6.88734 7.00506 7.02175 7.16002 7.26789 7.36870 7.58320 7.64557 7.68352 7.82180 8.32012 8.41278 8.90175 9.49034 10.93500 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037110 B = 0.003899 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.337516 B = 7179.356904 C = 7488.116662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.490 4.490 8 C -0.013 4.013 9 C -0.112 4.112 10 C 0.154 3.846 11 H 0.077 0.923 12 N -0.723 5.723 13 C 0.480 3.520 14 O -0.539 6.539 15 C 0.069 3.931 16 N -0.829 5.829 17 C -0.093 4.093 18 C -0.148 4.148 19 C 0.055 3.945 20 N -0.672 5.672 21 C 0.078 3.922 22 C -0.114 4.114 23 C 0.013 3.987 24 H 0.265 0.735 25 H 0.031 0.969 26 H 0.019 0.981 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.389 0.611 30 H 0.342 0.658 31 H 0.349 0.651 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.350 0.650 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.061 0.939 44 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.157 -12.751 -9.899 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.509 4.509 8 C -0.051 4.051 9 C -0.151 4.151 10 C 0.051 3.949 11 H 0.096 0.904 12 N -0.374 5.374 13 C 0.263 3.737 14 O -0.414 6.414 15 C -0.029 4.029 16 N -0.362 5.362 17 C -0.131 4.131 18 C -0.188 4.188 19 C -0.074 4.074 20 N -0.300 5.300 21 C -0.054 4.054 22 C -0.152 4.152 23 C -0.025 4.025 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.222 0.778 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.169 0.831 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 10.606 -13.773 -9.056 19.601 hybrid contribution 0.078 2.784 -0.252 2.797 sum 10.684 -10.989 -9.308 17.931 Atomic orbital electron populations 1.69823 1.06141 1.27016 1.49718 1.24836 0.94715 0.98581 0.94467 0.86660 0.80025 0.83268 0.78429 1.20449 1.21558 1.19188 1.20032 0.89306 0.91477 1.50096 1.19709 0.96622 0.94983 0.93801 1.21887 0.97098 0.95257 1.00819 1.21071 0.94557 0.88923 0.90345 0.90446 1.46493 1.23565 1.45934 1.21374 1.21606 0.81443 0.81486 0.89174 1.90690 1.57969 1.64555 1.28176 1.21904 0.98113 0.96275 0.86648 1.58870 1.14892 1.34834 1.27582 1.21384 0.91352 1.00164 1.00224 1.22169 1.00012 0.96569 1.00009 1.22027 0.87370 0.95856 1.02193 1.60741 1.12440 1.48975 1.07878 1.21960 0.98913 0.87286 0.97217 1.21937 0.92245 0.98644 1.02377 1.19345 0.98731 0.92773 0.91627 0.92530 0.95093 0.96268 0.94712 0.93160 0.77764 0.84350 0.83689 0.90341 0.91844 0.91768 0.90755 0.91214 0.90803 0.83089 0.90381 0.90002 0.92779 0.94590 0.92021 0.97541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 12.73 55.43 0.71 -24.43 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.89 21.00 27.27 -169.99 -4.64 16.36 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.20 6.46 56.52 0.37 -5.84 16 7 C -0.49 -12.72 5.51 -98.92 -0.55 -13.27 16 8 C -0.01 -0.31 5.59 -27.49 -0.15 -0.46 16 9 C -0.11 -2.31 5.50 -26.64 -0.15 -2.45 16 10 C 0.15 2.93 2.35 -67.98 -0.16 2.77 16 11 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 12 N -0.72 -10.67 4.97 -53.85 -0.27 -10.94 16 13 C 0.48 7.26 6.66 -10.99 -0.07 7.19 16 14 O -0.54 -10.51 15.71 5.56 0.09 -10.43 16 15 C 0.07 0.75 0.78 -132.67 -0.10 0.65 16 16 N -0.83 -7.08 7.53 -0.12 0.00 -7.08 16 17 C -0.09 -1.03 4.50 -26.61 -0.12 -1.15 16 18 C -0.15 -1.30 5.91 -26.65 -0.16 -1.46 16 19 C 0.06 0.48 6.55 -3.83 -0.03 0.45 16 20 N -0.67 -6.28 6.86 -113.82 -0.78 -7.06 16 21 C 0.08 0.82 5.48 -3.84 -0.02 0.79 16 22 C -0.11 -2.25 5.40 -26.61 -0.14 -2.39 16 23 C 0.01 0.32 5.97 -27.46 -0.16 0.15 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 25 H 0.03 0.73 4.78 -51.93 -0.25 0.48 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.39 4.60 6.98 -40.82 -0.28 4.32 16 30 H 0.34 2.60 7.44 -39.30 -0.29 2.31 16 31 H 0.35 3.06 8.98 -39.29 -0.35 2.71 16 32 H 0.08 0.99 7.79 -51.93 -0.40 0.59 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.66 7.72 -51.93 -0.40 0.26 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.35 3.07 8.31 -39.29 -0.33 2.74 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -29.16 334.09 -9.08 -38.25 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.32 Total: 7.51 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.91 Total: -7.21 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.34 Total: -49.52 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.64 Total: 16.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.16 -9.08 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220095438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.099 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds