Wall clock time and date at job start Tue Mar 31 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 H 1.09001 * 109.46803 * 177.93177 * 3 2 1 5 5 C 1.50700 * 109.47230 * 57.92980 * 3 2 1 6 6 H 1.07996 * 120.00173 * 239.99982 * 5 3 2 7 7 C 1.37879 * 119.99498 * 59.99682 * 5 3 2 8 8 N 1.31512 * 120.00347 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99897 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47240 * 89.99967 * 9 7 5 11 11 H 1.48497 * 109.47492 * 210.00465 * 9 7 5 12 12 H 1.48510 * 109.46921 * 330.00378 * 9 7 5 13 13 N 1.46899 * 109.47096 * 297.93065 * 3 2 1 14 14 C 1.46896 * 111.00318 * 273.73530 * 13 3 2 15 15 C 1.50698 * 109.47416 * 175.06068 * 14 13 3 16 16 C 1.39870 * 126.03351 * 269.68955 * 15 14 13 17 17 C 1.50699 * 125.90220 * 359.97438 * 16 15 14 18 18 N 1.30844 * 108.20049 * 179.81940 * 16 15 14 19 19 N 1.40086 * 108.20513 * 0.43556 * 18 16 15 20 20 C 1.46497 * 126.04114 * 179.69932 * 19 18 16 21 21 C 1.53001 * 109.47061 * 270.03112 * 20 19 18 22 22 O 1.42900 * 109.47286 * 179.97438 * 21 20 19 23 23 C 1.34957 * 107.92354 * 359.72164 * 19 18 16 24 24 C 1.50696 * 126.12722 * 179.97438 * 23 19 18 25 25 H 1.09004 * 109.47228 * 174.40673 * 1 2 3 26 26 H 1.08997 * 109.47233 * 54.40509 * 1 2 3 27 27 H 1.09003 * 109.47208 * 294.40208 * 1 2 3 28 28 H 1.08997 * 109.47149 * 120.00407 * 2 1 3 29 29 H 1.09001 * 109.46801 * 240.00199 * 2 1 3 30 30 H 0.97002 * 119.99727 * 180.02562 * 8 7 5 31 31 H 1.00902 * 110.99853 * 149.77960 * 13 3 2 32 32 H 1.09006 * 109.46730 * 295.05567 * 14 13 3 33 33 H 1.08996 * 109.47238 * 55.05030 * 14 13 3 34 34 H 1.08994 * 109.47031 * 90.00020 * 17 16 15 35 35 H 1.09006 * 109.47272 * 209.99963 * 17 16 15 36 36 H 1.09003 * 109.46821 * 329.99756 * 17 16 15 37 37 H 1.09001 * 109.46635 * 30.02343 * 20 19 18 38 38 H 1.08991 * 109.47333 * 150.02421 * 20 19 18 39 39 H 1.08998 * 109.46764 * 299.99692 * 21 20 19 40 40 H 1.09000 * 109.47403 * 59.99313 * 21 20 19 41 41 H 0.96693 * 114.00386 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47135 * 270.02870 * 24 23 19 43 43 H 1.09003 * 109.46720 * 30.02489 * 24 23 19 44 44 H 1.08998 * 109.46927 * 150.02338 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0371 5 6 1.4962 2.1676 1.2040 6 1 0.8792 3.0442 1.0733 7 6 1.7864 1.7116 2.4724 8 7 2.5381 0.6443 2.6316 9 14 1.1118 2.6099 3.9649 10 1 -0.2094 2.0390 4.3309 11 1 2.0516 2.4529 5.1039 12 1 0.9566 4.0521 3.6463 13 7 1.5916 2.1204 -1.2237 14 6 2.5295 1.8856 -2.3295 15 6 1.9775 2.4920 -3.5938 16 6 1.1567 1.8477 -4.5252 17 6 0.6705 0.4239 -4.4389 18 7 0.8813 2.6957 -5.4829 19 7 1.5273 3.9051 -5.1957 20 6 1.4876 5.1192 -6.0146 21 6 2.6374 5.0915 -7.0237 22 8 2.5984 6.2754 -7.8229 23 6 2.1930 3.7541 -4.0315 24 6 3.0275 4.8031 -3.3427 25 1 -0.3634 -1.0228 -0.1002 26 1 -0.3633 0.5981 -0.8356 27 1 -0.3634 0.4246 0.9359 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.7418 0.3233 3.5240 31 1 1.4619 3.1081 -1.0630 32 1 3.4898 2.3453 -2.0953 33 1 2.6648 0.8132 -2.4698 34 1 -0.2784 0.3960 -3.9033 35 1 0.5322 0.0256 -5.4441 36 1 1.4060 -0.1795 -3.9069 37 1 0.5378 5.1671 -6.5473 38 1 1.5886 5.9940 -5.3725 39 1 3.5871 5.0434 -6.4910 40 1 2.5363 4.2165 -7.6658 41 1 3.3004 6.3258 -8.4859 42 1 4.0575 4.7355 -3.6927 43 1 2.6300 5.7918 -3.5721 44 1 2.9983 4.6407 -2.2653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254877547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:35 Heat of formation + Delta-G solvation = 13.276339 kcal Electronic energy + Delta-G solvation = -22611.672476 eV Core-core repulsion = 19372.299634 eV Total energy + Delta-G solvation = -3239.372842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20115 -37.45356 -36.25402 -34.22984 -33.11636 -31.70804 -30.57955 -29.85751 -27.73969 -26.68052 -25.95734 -23.87238 -23.02792 -22.41390 -19.48068 -19.23174 -18.85568 -17.92403 -16.47133 -15.85404 -15.59301 -15.48389 -14.83324 -14.25169 -14.11450 -13.73446 -13.52245 -13.25525 -13.13904 -12.98058 -12.55664 -12.42649 -12.29284 -12.20683 -11.90394 -11.69106 -11.65980 -11.52479 -11.04108 -10.89013 -10.68951 -10.44561 -10.34417 -10.25063 -10.02581 -9.65689 -9.30179 -8.85620 -8.74400 -8.43891 -8.02304 -7.10578 -5.98705 -4.03563 1.98927 2.43630 3.02387 3.31013 3.37889 3.40467 3.99411 4.39957 4.43305 4.71830 4.80477 4.90487 4.96928 5.15191 5.32478 5.33962 5.42269 5.51718 5.55824 5.65320 5.69680 5.90767 5.94820 6.00337 6.23062 6.34263 6.43382 6.55363 6.61713 6.78419 6.92406 6.98038 7.12195 7.21866 7.30342 7.38755 7.57060 7.80260 7.84496 7.90777 7.97625 8.32410 8.47887 8.74928 9.07069 9.61130 11.07154 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023574 B = 0.003942 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.458681 B = 7101.129173 C = 7853.905470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.100 4.100 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.137 3.863 15 C -0.208 4.208 16 C 0.098 3.902 17 C -0.068 4.068 18 N -0.307 5.307 19 N -0.378 5.378 20 C 0.140 3.860 21 C 0.063 3.937 22 O -0.571 6.571 23 C 0.081 3.919 24 C -0.092 4.092 25 H 0.011 0.989 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.010 0.990 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.021 0.979 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.386 0.614 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 6.324 -16.510 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.138 4.138 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.309 5.309 14 C 0.006 3.994 15 C -0.219 4.219 16 C -0.069 4.069 17 C -0.127 4.127 18 N -0.129 5.129 19 N -0.162 5.162 20 C 0.017 3.983 21 C -0.017 4.017 22 O -0.376 6.376 23 C -0.045 4.045 24 C -0.150 4.150 25 H 0.030 0.970 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.234 0.766 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.670 6.138 -17.346 18.412 hybrid contribution 1.302 0.817 1.506 2.152 sum 1.972 6.954 -15.840 17.412 Atomic orbital electron populations 1.21432 0.97566 0.97028 1.01545 1.21403 0.95032 0.98233 0.99175 1.19116 0.93175 0.91662 0.85225 0.98333 1.21193 1.31416 1.11894 0.90397 0.92435 1.24870 0.95120 0.95040 0.98775 1.69889 1.37466 1.23171 1.22256 0.86615 0.78804 0.80091 0.82572 1.20692 1.21393 1.20045 1.60663 1.47446 1.15954 1.06879 1.20123 0.92605 0.99148 0.87520 1.19881 1.07690 0.93490 1.00820 1.22198 0.96076 0.96604 0.92008 1.20141 1.02199 0.88335 1.01992 1.77269 1.20586 0.90808 1.24246 1.48053 1.39900 1.10571 1.17675 1.21183 1.00158 0.83941 0.93002 1.22471 0.98183 0.87708 0.93297 1.86371 1.56863 1.41928 1.52453 1.20845 0.98055 0.96904 0.88684 1.20453 0.97939 0.95219 1.01400 0.96978 0.93343 0.93140 0.89851 0.97140 0.93040 0.85544 0.96099 0.91182 0.90135 0.91798 0.90298 0.88316 0.88511 0.93050 0.92682 0.76610 0.90653 0.91419 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.46 37.16 0.35 -2.30 16 2 C -0.10 -2.38 5.58 -26.73 -0.15 -2.53 16 3 C 0.22 5.23 2.30 -68.87 -0.16 5.07 16 4 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16 5 C -0.51 -13.48 7.33 -34.44 -0.25 -13.73 16 6 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.86 11.34 55.43 0.63 -24.23 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.68 -14.02 5.50 -109.22 -0.60 -14.62 16 14 C 0.14 2.45 5.36 -4.98 -0.03 2.43 16 15 C -0.21 -3.43 5.65 -105.06 -0.59 -4.03 16 16 C 0.10 1.60 7.22 -82.40 -0.59 1.01 16 17 C -0.07 -0.96 10.26 36.01 0.37 -0.59 16 18 N -0.31 -5.04 12.58 33.67 0.42 -4.62 16 19 N -0.38 -5.37 3.61 -57.15 -0.21 -5.58 16 20 C 0.14 1.52 6.61 -4.04 -0.03 1.49 16 21 C 0.06 0.57 7.37 37.16 0.27 0.85 16 22 O -0.57 -4.72 13.66 -35.23 -0.48 -5.20 16 23 C 0.08 1.18 6.93 -82.26 -0.57 0.61 16 24 C -0.09 -1.06 9.72 36.00 0.35 -0.71 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 27 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 28 H 0.08 2.22 6.13 -51.93 -0.32 1.90 16 29 H 0.01 0.22 7.44 -51.93 -0.39 -0.16 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.33 6.79 8.24 -39.29 -0.32 6.47 16 32 H 0.02 0.37 7.77 -51.93 -0.40 -0.03 16 33 H 0.07 1.28 6.50 -51.93 -0.34 0.95 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.08 7.25 -51.93 -0.38 0.71 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.10 0.92 7.05 -51.93 -0.37 0.55 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.39 1.42 9.12 45.56 0.42 1.84 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.65 7.08 -51.93 -0.37 0.29 16 44 H 0.09 1.13 7.77 -51.93 -0.40 0.72 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -30.71 356.61 -7.55 -38.26 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.54 Total: 5.44 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.12 Total: -10.81 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.25 Total: -49.05 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.48 Total: -5.20 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.71 -7.55 -38.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254877547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.534 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds