Wall clock time and date at job start Tue Mar 31 2020 05:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47212 * 2 1 4 4 H 1.08991 * 109.47263 * 184.53198 * 3 2 1 5 5 C 1.50697 * 109.47407 * 304.53892 * 3 2 1 6 6 H 1.07994 * 120.00210 * 115.15388 * 5 3 2 7 7 C 1.37878 * 119.99658 * 295.15447 * 5 3 2 8 8 N 1.31514 * 120.00216 * 352.92373 * 7 5 3 9 9 Si 1.86807 * 119.99731 * 172.92968 * 7 5 3 10 10 H 1.48499 * 109.46787 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.46775 * 299.99658 * 9 7 5 12 12 H 1.48494 * 109.47130 * 59.99782 * 9 7 5 13 13 N 1.46907 * 109.46753 * 64.53471 * 3 2 1 14 14 C 1.46905 * 110.99508 * 85.36251 * 13 3 2 15 15 C 1.50698 * 109.46751 * 184.76594 * 14 13 3 16 16 C 1.39872 * 126.04628 * 269.69081 * 15 14 13 17 17 C 1.50705 * 125.89116 * 359.97438 * 16 15 14 18 18 N 1.30832 * 108.20737 * 179.81588 * 16 15 14 19 19 N 1.40081 * 108.20520 * 0.44495 * 18 16 15 20 20 C 1.46499 * 126.03771 * 179.74253 * 19 18 16 21 21 C 1.53004 * 109.46580 * 269.96539 * 20 19 18 22 22 O 1.42910 * 109.46906 * 179.97438 * 21 20 19 23 23 C 1.34947 * 107.92508 * 359.71262 * 19 18 16 24 24 C 1.50706 * 126.12956 * 179.97438 * 23 19 18 25 25 H 1.08998 * 109.47100 * 185.57482 * 1 2 3 26 26 H 1.09000 * 109.46882 * 305.57120 * 1 2 3 27 27 H 1.08995 * 109.47022 * 65.57008 * 1 2 3 28 28 H 1.08997 * 109.46385 * 240.00443 * 2 1 3 29 29 H 1.08993 * 109.46888 * 120.00514 * 2 1 3 30 30 H 0.96997 * 119.99905 * 356.35952 * 8 7 5 31 31 H 1.00896 * 110.99657 * 209.30829 * 13 3 2 32 32 H 1.08994 * 109.46984 * 304.76299 * 14 13 3 33 33 H 1.08996 * 109.47103 * 64.76851 * 14 13 3 34 34 H 1.09001 * 109.46936 * 90.00458 * 17 16 15 35 35 H 1.08998 * 109.46849 * 209.99415 * 17 16 15 36 36 H 1.08999 * 109.47398 * 330.00001 * 17 16 15 37 37 H 1.08994 * 109.47573 * 29.96473 * 20 19 18 38 38 H 1.09003 * 109.47011 * 149.97115 * 20 19 18 39 39 H 1.08998 * 109.47488 * 299.99575 * 21 20 19 40 40 H 1.09003 * 109.46978 * 60.00556 * 21 20 19 41 41 H 0.96701 * 113.99699 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.46644 * 270.02560 * 24 23 19 43 43 H 1.08995 * 109.46948 * 30.01865 * 24 23 19 44 44 H 1.08995 * 109.47463 * 150.02474 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1269 1.4435 -0.0812 5 6 1.4481 2.1846 -1.1703 6 1 0.7743 3.0114 -1.0006 7 6 1.7668 1.8082 -2.4579 8 7 2.6911 0.8962 -2.6667 9 14 0.8857 2.5936 -3.9058 10 1 1.4067 2.0200 -5.1725 11 1 -0.5712 2.3248 -3.8036 12 1 1.1207 4.0598 -3.8921 13 7 1.6418 2.1026 1.2505 14 6 2.6129 1.8344 2.3197 15 6 2.1135 2.4273 3.6120 16 6 2.3771 3.7183 4.0813 17 6 3.2117 4.7597 3.3812 18 7 1.7711 3.8669 5.2313 19 7 1.1102 2.6698 5.5356 20 6 0.3141 2.4061 6.7368 21 6 1.2171 1.8339 7.8314 22 8 0.4407 1.5772 9.0034 23 6 1.3357 1.8027 4.5264 24 6 0.8153 0.3914 4.4346 25 1 -0.3633 -1.0228 0.0998 26 1 -0.3633 0.5978 0.8359 27 1 -0.3633 0.4250 -0.9356 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.1856 0.5268 -1.9185 31 1 1.5204 3.0947 1.1128 32 1 2.7356 0.7578 2.4374 33 1 3.5717 2.2833 2.0606 34 1 2.5749 5.3575 2.7292 35 1 3.6821 5.4063 4.1219 36 1 3.9817 4.2684 2.7863 37 1 -0.1358 3.3355 7.0859 38 1 -0.4715 1.6880 6.5016 39 1 1.6669 0.9045 7.4824 40 1 2.0027 2.5521 8.0666 41 1 0.9498 1.2126 9.7403 42 1 1.5309 -0.2903 4.8943 43 1 -0.1394 0.3216 4.9557 44 1 0.6782 0.1221 3.3873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254877548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:37 Heat of formation + Delta-G solvation = 8.991770 kcal Electronic energy + Delta-G solvation = -22671.877227 eV Core-core repulsion = 19432.318592 eV Total energy + Delta-G solvation = -3239.558635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25809 -37.48197 -36.51273 -34.35346 -33.17917 -31.70760 -30.74634 -29.94304 -27.73025 -26.72786 -25.62904 -23.75573 -23.34024 -22.46515 -19.54049 -19.34671 -19.10426 -17.93244 -16.93441 -15.95166 -15.63609 -15.56047 -14.60173 -14.32404 -13.89556 -13.78042 -13.65652 -13.42691 -13.23968 -13.03378 -12.76537 -12.45503 -12.34527 -12.31735 -11.88044 -11.79975 -11.59255 -11.45098 -11.33663 -11.08358 -10.76530 -10.46469 -10.28897 -10.08769 -10.04112 -9.85209 -9.65579 -8.92491 -8.51657 -8.30649 -8.05652 -7.26133 -6.31993 -4.02311 1.95460 2.38978 2.93586 3.45275 3.47453 3.65425 3.96798 4.37010 4.54771 4.69468 4.80193 4.85351 4.93151 5.15401 5.30492 5.38110 5.39467 5.41379 5.52939 5.56549 5.74396 5.77525 5.81844 6.01739 6.05843 6.23143 6.29176 6.36410 6.49019 6.53680 6.65720 6.89333 6.99662 7.09880 7.10755 7.18316 7.32604 7.52260 7.59079 7.90000 7.94706 8.18414 8.58216 8.65494 8.91640 9.67663 11.04815 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.003863 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.889796 B = 7245.597563 C = 7785.012984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.104 4.104 3 C 0.204 3.796 4 H -0.009 1.009 5 C -0.591 4.591 6 H 0.052 0.948 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 1.063 2.937 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.674 5.674 14 C 0.136 3.864 15 C -0.214 4.214 16 C 0.084 3.916 17 C -0.073 4.073 18 N -0.305 5.305 19 N -0.377 5.377 20 C 0.139 3.861 21 C 0.063 3.937 22 O -0.571 6.571 23 C 0.099 3.901 24 C -0.093 4.093 25 H 0.014 0.986 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.019 0.981 30 H 0.270 0.730 31 H 0.334 0.666 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.386 0.614 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 0.393 18.503 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.142 4.142 3 C 0.095 3.905 4 H 0.008 0.992 5 C -0.630 4.630 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.548 5.548 9 Si 0.891 3.109 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.305 5.305 14 C 0.005 3.995 15 C -0.225 4.225 16 C -0.082 4.082 17 C -0.132 4.132 18 N -0.127 5.127 19 N -0.162 5.162 20 C 0.017 3.983 21 C -0.016 4.016 22 O -0.376 6.376 23 C -0.027 4.027 24 C -0.151 4.151 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.234 0.766 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.483 0.831 17.748 17.940 hybrid contribution 1.436 -0.187 1.200 1.881 sum -1.048 0.644 18.948 18.988 Atomic orbital electron populations 1.21420 0.96588 0.97315 1.02222 1.21467 0.96247 0.98363 0.98154 1.19222 0.93032 0.91669 0.86528 0.99151 1.21948 1.30928 1.18261 0.91856 0.92944 1.25655 0.96424 0.95976 1.00008 1.70790 1.21245 1.27138 1.35585 0.83636 0.75779 0.75530 0.75932 1.20944 1.21435 1.21599 1.60589 1.46410 1.16180 1.07279 1.20122 0.92981 0.98773 0.87597 1.19808 1.08064 0.94829 0.99805 1.22233 0.97651 0.95457 0.92880 1.20180 0.98129 0.95670 0.99189 1.77249 1.14521 1.03306 1.17596 1.48087 1.41892 1.09833 1.16363 1.21203 0.92129 1.03088 0.81922 1.22466 0.93618 0.99607 0.85950 1.86376 1.39651 1.87240 1.24316 1.20814 0.98571 0.94054 0.89246 1.20488 1.00150 0.89190 1.05261 0.96645 0.93037 0.92529 0.92525 0.96277 0.91851 0.84896 0.91628 0.95722 0.90319 0.91329 0.90407 0.88290 0.88400 0.93015 0.92708 0.76589 0.90877 0.91598 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.42 37.16 0.35 -2.21 16 2 C -0.10 -2.38 5.51 -26.73 -0.15 -2.53 16 3 C 0.20 4.90 1.93 -68.86 -0.13 4.76 16 4 H -0.01 -0.24 7.21 -51.93 -0.37 -0.61 16 5 C -0.59 -15.81 7.13 -34.44 -0.25 -16.05 16 6 H 0.05 1.42 7.67 -52.49 -0.40 1.02 16 7 C 0.02 0.66 5.26 -17.82 -0.09 0.57 16 8 N -0.91 -26.58 12.95 55.43 0.72 -25.86 16 9 Si 1.06 24.79 29.91 -169.99 -5.08 19.70 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.67 -13.91 5.61 -109.22 -0.61 -14.52 16 14 C 0.14 2.43 5.36 -4.97 -0.03 2.40 16 15 C -0.21 -3.53 5.65 -105.05 -0.59 -4.12 16 16 C 0.08 1.35 7.22 -82.40 -0.59 0.76 16 17 C -0.07 -0.98 10.26 36.01 0.37 -0.61 16 18 N -0.30 -4.94 12.58 33.67 0.42 -4.52 16 19 N -0.38 -5.38 3.61 -57.14 -0.21 -5.59 16 20 C 0.14 1.51 6.61 -4.04 -0.03 1.49 16 21 C 0.06 0.57 7.37 37.16 0.27 0.85 16 22 O -0.57 -4.71 13.66 -35.23 -0.48 -5.19 16 23 C 0.10 1.47 6.93 -82.26 -0.57 0.90 16 24 C -0.09 -1.12 9.72 36.01 0.35 -0.77 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 1.09 7.59 -51.93 -0.39 0.69 16 27 H 0.06 1.35 7.31 -51.93 -0.38 0.97 16 28 H 0.06 1.43 6.35 -51.93 -0.33 1.10 16 29 H 0.02 0.39 7.33 -51.93 -0.38 0.01 16 30 H 0.27 7.86 6.03 -40.82 -0.25 7.61 16 31 H 0.33 7.11 8.29 -39.29 -0.33 6.78 16 32 H 0.07 1.17 6.94 -51.93 -0.36 0.81 16 33 H 0.02 0.45 7.24 -51.93 -0.38 0.07 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.01 7.25 -51.93 -0.38 0.63 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.10 0.94 7.05 -51.93 -0.37 0.57 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.39 1.41 9.12 45.56 0.42 1.83 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.68 7.08 -51.93 -0.37 0.31 16 44 H 0.10 1.37 7.77 -51.93 -0.40 0.96 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -31.54 355.25 -7.40 -38.94 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.42 Total: 6.25 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -1.09 Total: -14.56 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.32 Total: -50.49 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.48 Total: -5.19 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.54 -7.40 -38.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254877548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.931 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds