Wall clock time and date at job start Tue Mar 31 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47379 * 2 1 4 4 H 1.08995 * 109.46960 * 318.45363 * 3 2 1 5 5 C 1.50694 * 109.47432 * 198.44694 * 3 2 1 6 6 H 1.08001 * 120.00228 * 245.66877 * 5 3 2 7 7 C 1.37883 * 119.99945 * 65.66929 * 5 3 2 8 8 N 1.31520 * 119.99941 * 5.45586 * 7 5 3 9 9 Si 1.86795 * 120.00212 * 185.45939 * 7 5 3 10 10 H 1.48504 * 109.47458 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47141 * 300.00043 * 9 7 5 12 12 H 1.48506 * 109.47305 * 59.99716 * 9 7 5 13 13 N 1.46900 * 109.46872 * 78.44798 * 3 2 1 14 14 C 1.46902 * 110.99934 * 52.52197 * 13 3 2 15 15 C 1.46904 * 111.00189 * 288.57113 * 13 3 2 16 16 C 1.52992 * 109.47181 * 200.38062 * 15 13 3 17 17 C 1.50697 * 109.47272 * 179.97438 * 16 15 13 18 18 N 1.29948 * 126.28936 * 90.02349 * 17 16 15 19 19 O 1.21299 * 110.25072 * 179.97438 * 18 17 16 20 20 C 1.33649 * 109.81522 * 0.02562 * 19 18 17 21 21 C 1.50697 * 126.55492 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47093 * 299.97515 * 21 20 19 23 23 C 1.53004 * 109.46902 * 59.96963 * 21 20 19 24 24 N 1.31136 * 106.89079 * 359.76830 * 20 19 18 25 25 H 1.09005 * 109.46791 * 63.79798 * 1 2 3 26 26 H 1.08997 * 109.47099 * 183.79068 * 1 2 3 27 27 H 1.08995 * 109.47369 * 303.79313 * 1 2 3 28 28 H 1.09007 * 109.46959 * 240.00045 * 2 1 3 29 29 H 1.08995 * 109.47262 * 120.00346 * 2 1 3 30 30 H 0.97003 * 119.99648 * 355.10853 * 8 7 5 31 31 H 1.09002 * 109.46764 * 60.00271 * 14 13 3 32 32 H 1.09002 * 109.46922 * 179.97438 * 14 13 3 33 33 H 1.08997 * 109.47316 * 300.00092 * 14 13 3 34 34 H 1.09007 * 109.46703 * 320.38115 * 15 13 3 35 35 H 1.08997 * 109.47216 * 80.37842 * 15 13 3 36 36 H 1.09007 * 109.47345 * 299.99660 * 16 15 13 37 37 H 1.08997 * 109.47225 * 59.99786 * 16 15 13 38 38 H 1.08998 * 109.47605 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47507 * 59.99791 * 22 21 20 40 40 H 1.08992 * 109.47331 * 179.97438 * 22 21 20 41 41 H 1.09009 * 109.47110 * 299.99917 * 22 21 20 42 42 H 1.08996 * 109.46802 * 60.00458 * 23 21 20 43 43 H 1.09006 * 109.46816 * 180.02562 * 23 21 20 44 44 H 1.08991 * 109.47552 * 299.99916 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.4361 2.0414 -0.6816 5 6 3.4782 1.4668 -0.4496 6 1 4.2540 1.7688 0.2384 7 6 3.8036 1.1036 -1.7393 8 7 2.8521 0.8396 -2.6080 9 14 5.5957 0.9864 -2.2527 10 1 5.6767 0.5795 -3.6786 11 1 6.2485 2.3086 -2.0769 12 1 6.2870 -0.0227 -1.4105 13 7 1.9418 1.9966 1.3570 14 6 2.5971 1.1164 2.3337 15 6 0.5410 2.2412 1.7256 16 6 0.4846 3.2509 2.8736 17 6 -0.9524 3.5024 3.2514 18 7 -1.6410 2.8463 4.1368 19 8 -2.7669 3.2921 4.2078 20 6 -2.9079 4.3055 3.3479 21 6 -4.1507 5.1286 3.1267 22 6 -5.2909 4.2174 2.6676 23 6 -4.5445 5.8190 4.4341 24 7 -1.7564 4.4502 2.7373 25 1 -0.3633 0.4538 -0.9221 26 1 -0.3633 -1.0254 0.0679 27 1 -0.3634 0.5715 0.8540 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.9246 0.8310 -2.3238 31 1 3.6506 1.0083 2.0758 32 1 2.5100 1.5505 3.3297 33 1 2.1174 0.1378 2.3202 34 1 0.0030 2.6391 0.8650 35 1 0.0797 1.3056 2.0416 36 1 1.0225 2.8531 3.7342 37 1 0.9459 4.1865 2.5576 38 1 -3.9569 5.8812 2.3624 39 1 -5.4848 3.4648 3.4319 40 1 -6.1899 4.8126 2.5081 41 1 -5.0103 3.7255 1.7362 42 1 -3.7322 6.4681 4.7611 43 1 -5.4437 6.4140 4.2742 44 1 -4.7384 5.0665 5.1983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:44 Heat of formation + Delta-G solvation = 63.866795 kcal Electronic energy + Delta-G solvation = -22590.686810 eV Core-core repulsion = 19353.507735 eV Total energy + Delta-G solvation = -3237.179076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.59603 -38.17012 -36.56988 -35.92729 -33.49418 -31.98593 -30.98951 -29.94683 -27.66576 -26.56584 -25.86093 -24.42974 -23.61866 -22.93361 -21.35467 -20.10204 -19.45168 -18.06240 -17.38525 -16.74621 -16.17407 -15.64134 -14.85575 -14.63774 -14.09829 -13.74870 -13.71231 -13.58607 -13.05610 -12.70455 -12.67554 -12.46554 -12.29227 -12.19072 -12.07788 -11.82161 -11.55756 -11.45896 -11.35164 -11.15205 -11.00631 -10.85824 -10.80693 -10.60560 -10.42681 -10.14484 -10.04828 -9.86007 -9.63035 -8.53058 -8.23962 -7.24520 -6.30880 -4.01789 1.12734 2.24612 2.71809 3.46357 3.47820 3.55277 3.66532 4.03292 4.44193 4.53183 4.54443 4.65464 4.92013 5.12544 5.15839 5.31921 5.32969 5.34527 5.38562 5.47074 5.50508 5.66511 5.73518 5.76347 5.83027 5.92739 5.96441 6.03422 6.07871 6.16194 6.21874 6.27826 6.37369 6.60492 6.70343 6.82653 6.95270 7.12892 7.40787 7.84427 8.07495 8.19796 8.37211 8.61256 8.91314 9.68305 11.06312 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030134 B = 0.003409 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.963946 B = 8210.951547 C = 8382.151310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.161 4.161 3 C 0.207 3.793 4 H 0.032 0.968 5 C -0.580 4.580 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 1.069 2.931 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.524 5.524 14 C 0.029 3.971 15 C 0.058 3.942 16 C -0.029 4.029 17 C 0.185 3.815 18 N -0.388 5.388 19 O 0.074 5.926 20 C 0.175 3.825 21 C 0.001 3.999 22 C -0.152 4.152 23 C -0.150 4.150 24 N -0.475 5.475 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.271 0.729 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 6.943 12.935 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.201 4.201 3 C 0.100 3.900 4 H 0.050 0.950 5 C -0.618 4.618 6 H 0.074 0.926 7 C -0.186 4.186 8 N -0.552 5.552 9 Si 0.897 3.103 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.247 5.247 14 C -0.120 4.120 15 C -0.071 4.071 16 C -0.069 4.069 17 C -0.088 4.088 18 N -0.096 5.096 19 O 0.017 5.983 20 C -0.046 4.046 21 C -0.019 4.019 22 C -0.210 4.210 23 C -0.208 4.208 24 N -0.208 5.208 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.102 6.625 11.810 18.842 hybrid contribution -1.583 -0.523 1.292 2.109 sum -14.686 6.102 13.102 20.605 Atomic orbital electron populations 1.22294 0.98785 1.00021 1.01346 1.22444 0.92841 1.02688 1.02126 1.19492 0.97732 0.88687 0.84078 0.95012 1.21890 0.91693 1.48436 0.99827 0.92562 1.25749 1.06079 0.94048 0.92745 1.70789 1.01605 1.46696 1.36060 0.83542 0.74178 0.76498 0.76048 1.20941 1.21442 1.21588 1.62207 1.10952 1.47337 1.04215 1.22372 1.00892 0.94377 0.94323 1.22264 0.92565 0.95961 0.96345 1.20111 0.83779 1.02780 1.00180 1.26021 1.00529 0.90072 0.92219 1.74658 0.91978 1.21187 1.21736 1.85246 1.25419 1.38350 1.49333 1.28850 0.97314 0.90044 0.88369 1.19828 0.86275 0.95213 1.00627 1.21918 0.97003 0.99720 1.02325 1.21910 1.02455 1.00968 0.95503 1.71951 1.00697 1.22694 1.25498 0.93449 0.94590 0.92628 0.90901 0.93056 0.91800 0.90621 0.93687 0.95907 0.91131 0.94291 0.89399 0.87968 0.86624 0.91484 0.90446 0.91688 0.91834 0.90464 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 9.49 37.16 0.35 -3.03 16 2 C -0.16 -3.75 4.75 -26.73 -0.13 -3.88 16 3 C 0.21 5.14 1.54 -68.87 -0.11 5.04 16 4 H 0.03 0.88 7.17 -51.93 -0.37 0.51 16 5 C -0.58 -16.03 8.01 -34.44 -0.28 -16.31 16 6 H 0.06 1.57 7.00 -52.49 -0.37 1.20 16 7 C 0.02 0.50 5.09 -17.82 -0.09 0.40 16 8 N -0.91 -27.22 13.04 55.43 0.72 -26.50 16 9 Si 1.07 25.17 29.91 -169.99 -5.08 20.08 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 13 N -0.52 -11.26 4.62 -236.29 -1.09 -12.36 16 14 C 0.03 0.56 8.68 60.07 0.52 1.08 16 15 C 0.06 1.09 3.27 -3.83 -0.01 1.08 16 16 C -0.03 -0.47 5.96 -27.89 -0.17 -0.64 16 17 C 0.18 2.98 7.47 -156.37 -1.17 1.81 16 18 N -0.39 -6.14 12.16 30.90 0.38 -5.76 16 19 O 0.07 1.00 11.31 18.09 0.20 1.21 16 20 C 0.18 2.13 7.02 -13.05 -0.09 2.04 16 21 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 22 C -0.15 -0.94 9.18 37.16 0.34 -0.60 16 23 C -0.15 -0.84 9.18 37.16 0.34 -0.50 16 24 N -0.48 -7.26 11.55 -9.87 -0.11 -7.38 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.06 3.95 -51.93 -0.21 0.86 16 28 H 0.07 1.89 6.23 -51.93 -0.32 1.57 16 29 H 0.05 1.15 5.36 -51.93 -0.28 0.88 16 30 H 0.27 8.00 5.99 -40.82 -0.24 7.76 16 31 H 0.08 1.57 6.85 -51.93 -0.36 1.21 16 32 H 0.04 0.75 6.81 -51.93 -0.35 0.40 16 33 H 0.02 0.44 5.82 -51.93 -0.30 0.14 16 34 H 0.07 1.41 7.55 -51.93 -0.39 1.02 16 35 H 0.04 0.74 5.72 -51.93 -0.30 0.44 16 36 H 0.09 1.35 6.90 -51.93 -0.36 0.99 16 37 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -31.35 343.70 -7.47 -38.83 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.87 Total: 0.50 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.79 Total: -13.80 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.11 Total: -52.00 kcal Atomic # 8 Polarization: 1.00 SS G_CDS: 0.20 Total: 1.21 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.35 -7.47 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.693 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds