Wall clock time and date at job start Tue Mar 31 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46501 * 2 1 4 4 H 1.08999 * 109.47640 * 55.43858 * 3 2 1 5 5 C 1.50708 * 109.46550 * 175.43797 * 3 2 1 6 6 H 1.08000 * 119.99927 * 120.00362 * 5 3 2 7 7 C 1.37876 * 120.00202 * 299.99426 * 5 3 2 8 8 N 1.31517 * 119.99646 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00331 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46845 * 60.00034 * 9 7 5 11 11 H 1.48494 * 109.47339 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47059 * 300.00644 * 9 7 5 13 13 N 1.46901 * 109.47171 * 295.43570 * 3 2 1 14 14 C 1.46891 * 111.00007 * 168.85330 * 13 3 2 15 15 C 1.46901 * 110.99669 * 292.80437 * 13 3 2 16 16 C 1.52997 * 109.46917 * 163.83018 * 15 13 3 17 17 C 1.50707 * 109.47235 * 180.02562 * 16 15 13 18 18 N 1.29941 * 126.28774 * 90.02739 * 17 16 15 19 19 O 1.21295 * 110.25438 * 179.97438 * 18 17 16 20 20 C 1.33640 * 109.80901 * 359.97438 * 19 18 17 21 21 C 1.50708 * 126.55313 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.46921 * 299.97362 * 21 20 19 23 23 C 1.53000 * 109.47083 * 59.97499 * 21 20 19 24 24 N 1.31133 * 106.89859 * 359.77085 * 20 19 18 25 25 H 1.09002 * 109.47511 * 295.51504 * 1 2 3 26 26 H 1.09002 * 109.47475 * 55.52024 * 1 2 3 27 27 H 1.09003 * 109.47087 * 175.52045 * 1 2 3 28 28 H 1.08990 * 109.47256 * 239.99920 * 2 1 3 29 29 H 1.09001 * 109.47223 * 119.99339 * 2 1 3 30 30 H 0.96999 * 119.99857 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47386 * 60.00019 * 14 13 3 32 32 H 1.09004 * 109.47280 * 180.02562 * 14 13 3 33 33 H 1.08997 * 109.47338 * 299.99690 * 14 13 3 34 34 H 1.08998 * 109.47686 * 283.82709 * 15 13 3 35 35 H 1.09001 * 109.47349 * 43.83405 * 15 13 3 36 36 H 1.09002 * 109.47355 * 299.99992 * 16 15 13 37 37 H 1.09001 * 109.47510 * 60.00262 * 16 15 13 38 38 H 1.08997 * 109.47168 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47186 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47598 * 299.99933 * 22 21 20 41 41 H 1.09010 * 109.46819 * 60.00291 * 22 21 20 42 42 H 1.09000 * 109.47336 * 60.00123 * 23 21 20 43 43 H 1.09002 * 109.46991 * 180.02562 * 23 21 20 44 44 H 1.08998 * 109.46880 * 300.00515 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6113 1.9795 0.8463 5 6 3.5427 1.4441 0.1130 6 1 4.1424 1.8907 -0.6663 7 6 4.1520 0.8755 1.2114 8 7 3.4218 0.3314 2.1602 9 14 6.0147 0.8780 1.3518 10 1 6.5092 2.2783 1.3521 11 1 6.4167 0.2103 2.6158 12 1 6.5990 0.1470 0.1989 13 7 1.6422 2.1025 -1.2507 14 6 1.8783 3.5506 -1.1800 15 6 2.3374 1.5113 -2.4019 16 6 1.6265 1.9221 -3.6929 17 6 2.3393 1.3151 -4.8739 18 7 2.0914 0.1577 -5.4101 19 8 2.8381 -0.0404 -6.3452 20 6 3.6577 1.0038 -6.4995 21 6 4.7325 1.1544 -7.5451 22 6 5.7524 0.0239 -7.3947 23 6 4.1018 1.0904 -8.9376 24 7 3.3444 1.8748 -5.5705 25 1 -0.3634 0.4427 0.9274 26 1 -0.3634 0.5818 -0.8471 27 1 -0.3633 -1.0246 -0.0803 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.8504 -0.0690 2.9328 31 1 2.9382 3.7380 -1.0077 32 1 1.5749 4.0145 -2.1186 33 1 1.2966 3.9740 -0.3613 34 1 3.3677 1.8664 -2.4258 35 1 2.3294 0.4250 -2.3126 36 1 0.5962 1.5670 -3.6692 37 1 1.6344 3.0084 -3.7824 38 1 5.2326 2.1143 -7.4165 39 1 6.5295 0.1325 -8.1512 40 1 6.2017 0.0694 -6.4027 41 1 5.2522 -0.9361 -7.5233 42 1 3.3752 1.8958 -9.0448 43 1 4.8793 1.1989 -9.6939 44 1 3.6017 0.1305 -9.0661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:46 Heat of formation + Delta-G solvation = 53.794721 kcal Electronic energy + Delta-G solvation = -22708.437758 eV Core-core repulsion = 19470.821924 eV Total energy + Delta-G solvation = -3237.615833 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.45517 -37.60838 -36.46221 -35.70603 -33.18156 -31.86423 -31.19284 -29.71966 -27.58262 -26.78428 -25.22843 -24.31247 -23.73235 -22.60833 -21.37804 -20.04292 -18.94336 -17.91903 -17.21658 -16.32557 -16.05415 -15.21569 -14.80931 -14.41738 -14.28914 -13.75630 -13.65169 -13.06315 -12.89403 -12.60677 -12.59514 -12.42446 -12.05765 -12.00442 -11.81221 -11.69795 -11.49869 -11.37252 -11.25365 -11.06648 -10.91179 -10.86125 -10.70649 -10.65871 -10.37352 -9.94760 -9.66581 -9.63445 -9.36624 -9.07435 -8.35991 -7.18212 -5.99127 -4.12211 1.27092 2.39321 2.84555 3.27500 3.32599 3.35423 3.68490 4.19301 4.39468 4.53220 4.61896 4.76093 5.08843 5.23538 5.24607 5.27006 5.40291 5.44484 5.53774 5.61789 5.76983 5.79327 5.83322 5.87270 6.08093 6.10871 6.21665 6.35311 6.45006 6.49907 6.58604 6.70917 6.74853 6.75717 7.14463 7.19135 7.36473 7.59789 7.76630 7.95461 8.14183 8.30622 8.34558 8.45831 8.96930 9.55198 11.00477 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.004559 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.608603 B = 6140.320677 C = 7026.354033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.215 3.785 4 H 0.040 0.960 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.537 5.537 14 C 0.032 3.968 15 C 0.074 3.926 16 C -0.030 4.030 17 C 0.186 3.814 18 N -0.384 5.384 19 O 0.075 5.925 20 C 0.173 3.827 21 C 0.002 3.998 22 C -0.152 4.152 23 C -0.150 4.150 24 N -0.478 5.478 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.092 0.908 30 H 0.262 0.738 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 1.388 -18.647 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.109 3.891 4 H 0.058 0.942 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.261 5.261 14 C -0.117 4.117 15 C -0.056 4.056 16 C -0.070 4.070 17 C -0.087 4.087 18 N -0.091 5.091 19 O 0.017 5.983 20 C -0.048 4.048 21 C -0.019 4.019 22 C -0.210 4.210 23 C -0.208 4.208 24 N -0.211 5.211 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.114 1.062 -17.974 18.006 hybrid contribution 2.099 0.088 0.244 2.115 sum 1.985 1.150 -17.730 17.878 Atomic orbital electron populations 1.21718 0.98794 0.98569 1.00558 1.21612 0.92340 0.99178 1.01857 1.19292 0.93031 0.91233 0.85586 0.94170 1.21715 0.92786 1.38165 1.05723 0.92689 1.24895 0.97812 0.95004 0.95620 1.69863 1.34904 1.38053 1.09494 0.86750 0.86259 0.78239 0.77332 1.20313 1.21155 1.20431 1.62400 1.56373 1.02671 1.04665 1.22207 0.99757 0.89956 0.99787 1.21780 0.95248 1.00488 0.88099 1.20160 0.98595 1.00406 0.87815 1.26016 0.94135 0.88824 0.99698 1.74661 1.13949 1.19186 1.01353 1.85248 1.35060 1.40173 1.37841 1.28791 0.95477 0.83238 0.97337 1.19800 0.89845 1.02641 0.89571 1.21920 0.98265 0.97530 1.03301 1.21906 1.01581 1.03218 0.94086 1.71914 1.13740 1.29006 1.06474 0.94275 0.93163 0.95593 0.95022 0.88936 0.92819 0.95228 0.93643 0.92546 0.94320 0.90644 0.88883 0.89262 0.86788 0.90552 0.91634 0.91429 0.91896 0.90566 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.85 37.16 0.37 -2.53 16 2 C -0.11 -2.69 5.19 -26.73 -0.14 -2.83 16 3 C 0.21 5.33 1.70 -68.86 -0.12 5.21 16 4 H 0.04 1.10 8.04 -51.93 -0.42 0.68 16 5 C -0.54 -14.73 7.20 -34.44 -0.25 -14.97 16 6 H 0.05 1.51 5.99 -52.49 -0.31 1.19 16 7 C 0.07 1.90 5.29 -17.82 -0.09 1.81 16 8 N -0.88 -25.01 11.29 55.43 0.63 -24.39 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.54 -11.42 4.02 -236.28 -0.95 -12.37 16 14 C 0.03 0.61 9.21 60.06 0.55 1.17 16 15 C 0.07 1.50 4.02 -3.82 -0.02 1.49 16 16 C -0.03 -0.52 5.89 -27.88 -0.16 -0.68 16 17 C 0.19 3.22 7.47 -156.38 -1.17 2.05 16 18 N -0.38 -6.62 12.16 30.89 0.38 -6.24 16 19 O 0.07 1.10 11.31 18.11 0.20 1.31 16 20 C 0.17 2.28 7.02 -13.06 -0.09 2.19 16 21 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 22 C -0.15 -1.11 9.18 37.16 0.34 -0.77 16 23 C -0.15 -0.94 9.18 37.16 0.34 -0.60 16 24 N -0.48 -7.74 11.55 -9.87 -0.11 -7.85 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.00 7.62 -51.93 -0.40 0.61 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.76 6.17 -51.93 -0.32 0.44 16 29 H 0.09 2.49 5.96 -51.93 -0.31 2.18 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.61 7.22 -51.93 -0.37 0.24 16 32 H 0.04 0.75 6.58 -51.93 -0.34 0.41 16 33 H 0.06 1.06 8.11 -51.93 -0.42 0.63 16 34 H 0.04 0.86 6.70 -51.93 -0.35 0.51 16 35 H 0.08 1.68 5.94 -51.93 -0.31 1.37 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.09 1.42 6.70 -51.93 -0.35 1.07 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -29.88 350.56 -7.61 -37.49 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.26 Total: -0.83 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -0.75 Total: -8.77 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.06 Total: -50.85 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.20 Total: 1.31 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.88 -7.61 -37.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.283 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds