Wall clock time and date at job start Tue Mar 31 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46501 * 2 1 4 4 H 1.08999 * 109.47640 * 55.43858 * 3 2 1 5 5 C 1.50708 * 109.46550 * 175.43797 * 3 2 1 6 6 H 1.08000 * 119.99927 * 120.00362 * 5 3 2 7 7 C 1.37876 * 120.00202 * 299.99426 * 5 3 2 8 8 N 1.31517 * 119.99646 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00331 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46845 * 60.00034 * 9 7 5 11 11 H 1.48494 * 109.47339 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47059 * 300.00644 * 9 7 5 13 13 N 1.46901 * 109.47171 * 295.43570 * 3 2 1 14 14 C 1.46891 * 111.00007 * 168.85330 * 13 3 2 15 15 C 1.46901 * 110.99669 * 292.80437 * 13 3 2 16 16 C 1.52997 * 109.46917 * 163.83018 * 15 13 3 17 17 C 1.50707 * 109.47235 * 180.02562 * 16 15 13 18 18 N 1.29941 * 126.28774 * 90.02739 * 17 16 15 19 19 O 1.21295 * 110.25438 * 179.97438 * 18 17 16 20 20 C 1.33640 * 109.80901 * 359.97438 * 19 18 17 21 21 C 1.50708 * 126.55313 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.46921 * 299.97362 * 21 20 19 23 23 C 1.53000 * 109.47083 * 59.97499 * 21 20 19 24 24 N 1.31133 * 106.89859 * 359.77085 * 20 19 18 25 25 H 1.09002 * 109.47511 * 295.51504 * 1 2 3 26 26 H 1.09002 * 109.47475 * 55.52024 * 1 2 3 27 27 H 1.09003 * 109.47087 * 175.52045 * 1 2 3 28 28 H 1.08990 * 109.47256 * 239.99920 * 2 1 3 29 29 H 1.09001 * 109.47223 * 119.99339 * 2 1 3 30 30 H 0.96999 * 119.99857 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47386 * 60.00019 * 14 13 3 32 32 H 1.09004 * 109.47280 * 180.02562 * 14 13 3 33 33 H 1.08997 * 109.47338 * 299.99690 * 14 13 3 34 34 H 1.08998 * 109.47686 * 283.82709 * 15 13 3 35 35 H 1.09001 * 109.47349 * 43.83405 * 15 13 3 36 36 H 1.09002 * 109.47355 * 299.99992 * 16 15 13 37 37 H 1.09001 * 109.47510 * 60.00262 * 16 15 13 38 38 H 1.08997 * 109.47168 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47186 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47598 * 299.99933 * 22 21 20 41 41 H 1.09010 * 109.46819 * 60.00291 * 22 21 20 42 42 H 1.09000 * 109.47336 * 60.00123 * 23 21 20 43 43 H 1.09002 * 109.46991 * 180.02562 * 23 21 20 44 44 H 1.08998 * 109.46880 * 300.00515 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6113 1.9795 0.8463 5 6 3.5427 1.4441 0.1130 6 1 4.1424 1.8907 -0.6663 7 6 4.1520 0.8755 1.2114 8 7 3.4218 0.3314 2.1602 9 14 6.0147 0.8780 1.3518 10 1 6.5092 2.2783 1.3521 11 1 6.4167 0.2103 2.6158 12 1 6.5990 0.1470 0.1989 13 7 1.6422 2.1025 -1.2507 14 6 1.8783 3.5506 -1.1800 15 6 2.3374 1.5113 -2.4019 16 6 1.6265 1.9221 -3.6929 17 6 2.3393 1.3151 -4.8739 18 7 2.0914 0.1577 -5.4101 19 8 2.8381 -0.0404 -6.3452 20 6 3.6577 1.0038 -6.4995 21 6 4.7325 1.1544 -7.5451 22 6 5.7524 0.0239 -7.3947 23 6 4.1018 1.0904 -8.9376 24 7 3.3444 1.8748 -5.5705 25 1 -0.3634 0.4427 0.9274 26 1 -0.3634 0.5818 -0.8471 27 1 -0.3633 -1.0246 -0.0803 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.8504 -0.0690 2.9328 31 1 2.9382 3.7380 -1.0077 32 1 1.5749 4.0145 -2.1186 33 1 1.2966 3.9740 -0.3613 34 1 3.3677 1.8664 -2.4258 35 1 2.3294 0.4250 -2.3126 36 1 0.5962 1.5670 -3.6692 37 1 1.6344 3.0084 -3.7824 38 1 5.2326 2.1143 -7.4165 39 1 6.5295 0.1325 -8.1512 40 1 6.2017 0.0694 -6.4027 41 1 5.2522 -0.9361 -7.5233 42 1 3.3752 1.8958 -9.0448 43 1 4.8793 1.1989 -9.6939 44 1 3.6017 0.1305 -9.0661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:46 Heat of formation + Delta-G solvation = 34.636390 kcal Electronic energy + Delta-G solvation = -22709.268525 eV Core-core repulsion = 19470.821924 eV Total energy + Delta-G solvation = -3238.446601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.67723 -39.36400 -37.37655 -36.88068 -35.00791 -33.42298 -32.83043 -31.16675 -28.70482 -28.10749 -26.86687 -25.47706 -25.27616 -24.04417 -22.98416 -21.12206 -20.84181 -19.17924 -18.39302 -18.33415 -17.09028 -16.93850 -16.22427 -16.09339 -15.52525 -15.24435 -14.83226 -14.40177 -14.27730 -14.25790 -13.75316 -13.50101 -13.39282 -13.25379 -13.14586 -13.07198 -12.86880 -12.72487 -12.61525 -12.55008 -12.38675 -12.24048 -12.12887 -12.07750 -11.91286 -11.78461 -11.58980 -11.21968 -11.07132 -10.86112 -10.46631 -9.03482 -8.07538 -6.29389 0.13909 1.13908 1.33627 1.34409 1.41921 1.84893 2.36290 2.55902 2.97696 3.11458 3.48741 3.82555 3.90650 4.01457 4.10714 4.24654 4.34860 4.47396 4.53436 4.63382 4.71042 4.73416 4.77928 4.82824 4.87368 4.88527 4.90966 4.95239 4.99565 5.07076 5.11453 5.14716 5.23914 5.30665 5.33445 5.41148 5.47380 5.58178 5.75631 6.00157 6.12794 6.33503 6.57777 6.89661 7.15814 7.40997 8.88178 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.004559 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.608603 B = 6140.320677 C = 7026.354033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C 0.221 3.779 4 H 0.012 0.988 5 C -0.556 4.556 6 H 0.045 0.955 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.943 3.057 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.279 1.279 13 N -0.532 5.532 14 C 0.033 3.967 15 C 0.087 3.913 16 C -0.017 4.017 17 C 0.170 3.830 18 N -0.404 5.404 19 O 0.078 5.922 20 C 0.187 3.813 21 C 0.001 3.999 22 C -0.150 4.150 23 C -0.145 4.145 24 N -0.505 5.505 25 H 0.037 0.963 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.023 0.977 29 H 0.063 0.937 30 H 0.263 0.737 31 H 0.009 0.991 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.015 0.985 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 1.759 -20.773 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.030 0.970 5 C -0.595 4.595 6 H 0.064 0.936 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.204 1.204 13 N -0.255 5.255 14 C -0.115 4.115 15 C -0.043 4.043 16 C -0.056 4.056 17 C -0.103 4.103 18 N -0.113 5.113 19 O 0.019 5.981 20 C -0.033 4.033 21 C -0.019 4.019 22 C -0.208 4.208 23 C -0.203 4.203 24 N -0.238 5.238 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.125 0.875 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.123 0.877 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.422 1.447 -20.111 20.167 hybrid contribution 1.979 -0.027 0.826 2.144 sum 2.400 1.420 -19.285 19.485 Atomic orbital electron populations 1.21583 0.96028 0.99987 1.00848 1.21455 0.94771 0.98290 0.99966 1.19071 0.91724 0.91558 0.86308 0.96994 1.21943 0.94115 1.37941 1.05490 0.93634 1.25572 1.01721 0.94856 0.95471 1.69980 1.36321 1.38557 1.09828 0.85855 0.81604 0.78314 0.77350 1.19841 1.20423 1.20441 1.62368 1.55971 1.03659 1.03507 1.22268 0.98646 0.88750 1.01846 1.21592 0.94422 0.98876 0.89388 1.19963 0.98429 1.01239 0.85970 1.26040 0.94862 0.89188 1.00165 1.74633 1.15053 1.19383 1.02194 1.85210 1.35110 1.40534 1.37219 1.29814 0.94917 0.81729 0.96862 1.20200 0.88775 1.03617 0.89328 1.21947 0.98563 0.96970 1.03314 1.21920 1.02288 1.03037 0.93044 1.71906 1.14154 1.30153 1.07620 0.94431 0.92206 0.93718 0.95787 0.91826 0.92803 0.97222 0.90243 0.92114 0.96656 0.92951 0.88045 0.87806 0.85795 0.87456 0.93438 0.91469 0.92396 0.87668 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.85 71.98 0.71 -4.51 16 2 C -0.11 -5.24 5.19 30.60 0.16 -5.08 16 3 C 0.22 11.18 1.70 44.17 0.08 11.25 16 4 H 0.01 0.68 8.04 -2.39 -0.02 0.66 16 5 C -0.56 -30.75 7.20 25.60 0.18 -30.56 16 6 H 0.05 2.56 5.99 -2.91 -0.02 2.54 16 7 C 0.02 1.34 5.29 84.65 0.45 1.79 16 8 N -0.91 -52.32 11.29 21.45 0.24 -52.08 16 9 Si 0.94 44.37 29.54 68.60 2.03 46.40 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.53 -22.64 4.02 -901.46 -3.62 -26.26 16 14 C 0.03 1.27 9.21 127.69 1.18 2.45 16 15 C 0.09 3.58 4.02 86.30 0.35 3.93 16 16 C -0.02 -0.56 5.89 29.85 0.18 -0.39 16 17 C 0.17 5.82 7.47 138.47 1.03 6.86 16 18 N -0.40 -13.80 12.16 -60.35 -0.73 -14.54 16 19 O 0.08 2.23 11.31 74.87 0.85 3.08 16 20 C 0.19 4.74 7.02 88.38 0.62 5.36 16 21 C 0.00 0.02 3.39 -11.54 -0.04 -0.02 16 22 C -0.15 -1.86 9.18 71.98 0.66 -1.20 16 23 C -0.15 -1.41 9.18 71.98 0.66 -0.75 16 24 N -0.51 -16.03 11.55 -303.21 -3.50 -19.53 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 2.32 7.62 -2.39 -0.02 2.31 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.02 1.18 6.17 -2.39 -0.01 1.17 16 29 H 0.06 3.51 5.96 -2.39 -0.01 3.50 16 30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.01 0.39 7.22 -2.38 -0.02 0.37 16 32 H 0.08 2.46 6.58 -2.39 -0.02 2.45 16 33 H 0.06 2.24 8.11 -2.39 -0.02 2.22 16 34 H 0.02 0.69 6.70 -2.39 -0.02 0.68 16 35 H 0.05 2.38 5.94 -2.39 -0.01 2.37 16 36 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.10 3.13 6.70 -2.39 -0.02 3.11 16 38 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -65.55 350.56 2.44 -63.11 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.97 Total: 10.68 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 6.21 Total: -10.86 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -7.62 Total: -112.41 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.85 Total: 3.08 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -65.55 2.44 -63.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.747 kcal (2) G-P(sol) polarization free energy of solvation -65.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds