Wall clock time and date at job start Tue Mar 31 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 H 1.09001 * 109.46863 * 54.10338 * 3 2 1 5 5 C 1.50691 * 109.46810 * 174.10298 * 3 2 1 6 6 H 1.07997 * 120.00178 * 120.00231 * 5 3 2 7 7 C 1.37884 * 120.00132 * 299.99488 * 5 3 2 8 8 N 1.31515 * 119.99876 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 119.99782 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47059 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.46878 * 209.99766 * 9 7 5 12 12 H 1.48498 * 109.47163 * 329.99477 * 9 7 5 13 13 N 1.46896 * 109.46846 * 294.10069 * 3 2 1 14 14 C 1.47488 * 111.00005 * 85.22574 * 13 3 2 15 15 C 1.53507 * 87.93279 * 138.70216 * 14 13 3 16 16 N 1.46904 * 114.16627 * 220.32919 * 15 14 13 17 17 C 1.47194 * 110.99759 * 272.77539 * 16 15 14 18 18 C 1.52999 * 108.71382 * 167.62557 * 17 16 15 19 19 N 1.46010 * 110.04361 * 50.30177 * 18 17 16 20 20 C 1.46499 * 118.53471 * 161.86273 * 19 18 17 21 21 C 1.33712 * 122.92715 * 341.84408 * 19 18 17 22 22 O 1.21275 * 118.62339 * 181.68207 * 21 19 18 23 23 C 1.46905 * 110.99838 * 149.88725 * 16 15 14 24 24 C 1.47483 * 110.99976 * 181.18953 * 13 3 2 25 25 H 1.09000 * 109.46889 * 306.74063 * 1 2 3 26 26 H 1.08992 * 109.47207 * 186.74184 * 1 2 3 27 27 H 1.08995 * 109.46971 * 66.73517 * 1 2 3 28 28 H 1.08999 * 109.46883 * 119.99798 * 2 1 3 29 29 H 1.08997 * 109.47134 * 239.99901 * 2 1 3 30 30 H 0.97001 * 120.00019 * 180.02562 * 8 7 5 31 31 H 1.09004 * 113.47179 * 253.46671 * 14 13 3 32 32 H 1.08998 * 113.47709 * 23.92796 * 14 13 3 33 33 H 1.09000 * 114.34893 * 87.63781 * 15 14 13 34 34 H 1.09003 * 109.59143 * 287.40646 * 17 16 15 35 35 H 1.08993 * 109.59290 * 47.86220 * 17 16 15 36 36 H 1.09005 * 109.37244 * 290.13107 * 18 17 16 37 37 H 1.08996 * 109.28207 * 170.42250 * 18 17 16 38 38 H 1.08998 * 109.46985 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.46943 * 299.97741 * 20 19 18 40 40 H 1.08996 * 109.47361 * 59.97872 * 20 19 18 41 41 H 1.09003 * 109.38761 * 293.81924 * 23 16 15 42 42 H 1.08994 * 109.38666 * 53.61179 * 23 16 15 43 43 H 1.09002 * 113.47692 * 336.07317 * 24 13 3 44 44 H 1.09000 * 113.47572 * 106.46727 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5931 1.9859 0.8325 5 6 3.5399 1.4449 0.1460 6 1 4.1567 1.8854 -0.6234 7 6 4.1249 0.8848 1.2619 8 7 5.4339 0.8874 1.3895 9 14 3.0582 0.1224 2.5924 10 1 2.8418 -1.3153 2.2901 11 1 3.7362 0.2552 3.9069 12 1 1.7488 0.8213 2.6380 13 7 1.6701 2.0926 -1.2642 14 6 0.3054 2.6474 -1.1937 15 6 0.8291 3.8832 -1.9386 16 7 0.2926 5.1572 -1.4415 17 6 -0.9788 5.4889 -2.1049 18 6 -1.6426 6.6400 -1.3464 19 7 -0.6871 7.7264 -1.1495 20 6 -1.2001 9.0579 -0.8175 21 6 0.6351 7.5600 -1.2583 22 8 1.3594 8.5097 -1.0480 23 6 1.2612 6.2455 -1.6297 24 6 2.1708 3.4790 -1.3120 25 1 -0.3633 0.6148 0.8235 26 1 -0.3633 -1.0205 0.1206 27 1 -0.3633 0.4059 -0.9441 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 5.8455 0.4931 2.1743 31 1 -0.4262 2.0745 -1.7636 32 1 -0.0247 2.8606 -0.1770 33 1 0.8003 3.7988 -3.0250 34 1 -0.7859 5.7920 -3.1340 35 1 -1.6344 4.6183 -2.0947 36 1 -1.9883 6.2822 -0.3765 37 1 -2.4934 7.0063 -1.9209 38 1 -0.3662 9.7504 -0.7035 39 1 -1.8542 9.4051 -1.6173 40 1 -1.7615 9.0087 0.1155 41 1 2.1319 6.0682 -0.9982 42 1 1.5720 6.2767 -2.6739 43 1 2.3388 3.9142 -0.3268 44 1 3.0210 3.6108 -1.9813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:28 Heat of formation + Delta-G solvation = 28.621392 kcal Electronic energy + Delta-G solvation = -23226.151826 eV Core-core repulsion = 19987.444395 eV Total energy + Delta-G solvation = -3238.707431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.72961 -39.58844 -36.90936 -35.34038 -33.76996 -31.93356 -30.13968 -29.14766 -27.87779 -25.68660 -25.50021 -24.23991 -23.11140 -22.29514 -19.80693 -19.24390 -18.73967 -17.12356 -16.86039 -16.75662 -16.12822 -15.57369 -15.43765 -14.94415 -14.50066 -14.23942 -13.54381 -13.44714 -13.24543 -12.91250 -12.80708 -12.66085 -12.43322 -12.31459 -12.11832 -12.00828 -11.81374 -11.65004 -11.48755 -11.43903 -10.81420 -10.55881 -10.12217 -10.02916 -9.84967 -9.82003 -9.30621 -9.00500 -8.91151 -8.58981 -8.53291 -8.02585 -6.10027 -4.09605 2.51165 2.83355 3.25043 3.35673 3.37430 3.61707 4.34646 4.37310 4.50544 4.62829 4.87089 4.90971 5.09806 5.14858 5.18820 5.20391 5.26953 5.35714 5.41157 5.51480 5.63906 5.64902 5.71635 5.86856 5.94405 5.99974 6.06708 6.10880 6.15487 6.32051 6.35866 6.47685 6.58509 6.71538 6.73441 6.80445 7.01067 7.08378 7.23490 7.34077 7.75182 7.90547 8.02497 8.55000 8.95476 9.51564 11.02750 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.004522 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.476488 B = 6190.271551 C = 6703.795542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.158 3.842 4 H 0.009 0.991 5 C -0.512 4.512 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.267 1.267 13 N -0.456 5.456 14 C 0.013 3.987 15 C 0.032 3.968 16 N -0.519 5.519 17 C 0.035 3.965 18 C 0.121 3.879 19 N -0.609 5.609 20 C 0.073 3.927 21 C 0.524 3.476 22 O -0.552 6.552 23 C 0.040 3.960 24 C 0.033 3.967 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.264 0.736 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.107 9.751 -6.735 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C 0.050 3.950 4 H 0.027 0.973 5 C -0.550 4.550 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.192 1.192 13 N -0.178 5.178 14 C -0.116 4.116 15 C -0.076 4.076 16 N -0.246 5.246 17 C -0.094 4.094 18 C -0.003 4.003 19 N -0.343 5.343 20 C -0.070 4.070 21 C 0.313 3.687 22 O -0.430 6.430 23 C -0.091 4.091 24 C -0.097 4.097 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.138 0.862 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.444 9.614 -6.492 20.124 hybrid contribution -0.589 -0.065 0.701 0.918 sum -17.033 9.549 -5.791 20.368 Atomic orbital electron populations 1.22002 0.98145 1.00043 1.01138 1.21843 0.93161 0.99457 1.01195 1.20257 0.97154 0.91142 0.86485 0.97321 1.20945 0.88814 1.38914 1.06328 0.90216 1.24929 0.94777 0.95523 0.97744 1.69883 1.09132 1.45294 1.29160 0.86891 0.80791 0.79849 0.80969 1.20463 1.22481 1.19158 1.68825 1.02228 1.12076 1.34717 1.23922 0.95239 0.92710 0.99759 1.23619 0.98667 0.87680 0.97651 1.62781 1.03059 1.02194 1.56518 1.22482 0.92836 0.98356 0.95706 1.21522 0.91251 0.86352 1.01145 1.47318 1.06258 1.10779 1.69938 1.21723 1.00544 0.84621 1.00113 1.20229 0.81873 0.90415 0.76190 1.90707 1.60054 1.41403 1.50803 1.22252 0.96967 0.87282 1.02551 1.23553 0.94617 0.90766 1.00726 0.93868 0.94226 0.92401 0.93339 0.91497 0.92573 0.90817 0.91073 0.90346 0.93776 0.88401 0.90746 0.90456 0.89207 0.92385 0.92217 0.86245 0.90940 0.90335 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.92 37.16 0.33 -2.37 16 2 C -0.12 -2.55 5.10 -26.73 -0.14 -2.69 16 3 C 0.16 3.62 0.97 -68.87 -0.07 3.56 16 4 H 0.01 0.22 6.54 -51.93 -0.34 -0.12 16 5 C -0.51 -14.08 8.63 -34.44 -0.30 -14.38 16 6 H 0.08 2.40 7.63 -52.49 -0.40 2.00 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 9 Si 0.88 21.84 24.42 -169.99 -4.15 17.69 16 10 H -0.28 -6.69 6.82 56.52 0.39 -6.30 16 11 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 13 N -0.46 -8.90 6.11 -238.02 -1.45 -10.35 16 14 C 0.01 0.21 5.51 -7.55 -0.04 0.16 16 15 C 0.03 0.44 3.47 -67.50 -0.23 0.20 16 16 N -0.52 -6.39 4.72 -227.77 -1.07 -7.46 16 17 C 0.03 0.31 5.59 -3.66 -0.02 0.29 16 18 C 0.12 0.99 6.64 -4.31 -0.03 0.96 16 19 N -0.61 -6.72 3.23 -182.47 -0.59 -7.30 16 20 C 0.07 0.66 10.55 59.85 0.63 1.29 16 21 C 0.52 7.33 7.57 -11.67 -0.09 7.24 16 22 O -0.55 -9.57 16.07 5.56 0.09 -9.48 16 23 C 0.04 0.52 5.20 -5.19 -0.03 0.49 16 24 C 0.03 0.58 5.25 -7.55 -0.04 0.54 16 25 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.91 5.73 -51.93 -0.30 0.61 16 28 H 0.05 1.12 3.21 -51.93 -0.17 0.95 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.07 1.01 6.92 -51.93 -0.36 0.65 16 32 H 0.07 1.17 7.53 -51.93 -0.39 0.78 16 33 H 0.08 1.01 8.13 -51.93 -0.42 0.58 16 34 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.10 0.76 8.06 -51.93 -0.42 0.34 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 38 H 0.09 0.98 6.67 -51.93 -0.35 0.63 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.12 1.71 7.32 -51.93 -0.38 1.34 16 42 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 43 H 0.08 1.55 7.63 -51.93 -0.40 1.16 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -32.22 332.76 -8.83 -41.05 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.32 Total: 0.01 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -0.11 Total: -2.72 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -2.34 Total: -51.57 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.15 Total: 17.69 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.22 -8.83 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.667 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds