Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46954 * 111.00171 * 2 1 4 4 C 1.53045 * 109.36438 * 183.18464 * 3 2 1 5 5 N 1.46958 * 109.36552 * 301.60107 * 4 3 2 6 6 C 1.46906 * 111.00081 * 183.18707 * 5 4 3 7 7 C 1.53944 * 113.74248 * 164.71839 * 6 5 4 8 8 N 1.47802 * 86.03824 * 222.08710 * 7 6 5 9 9 C 1.34780 * 134.45724 * 204.64737 * 8 7 6 10 10 O 1.21282 * 120.00412 * 179.86727 * 9 8 7 11 11 C 1.50700 * 120.00226 * 359.86262 * 9 8 7 12 12 C 1.52992 * 109.47634 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47468 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99932 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99964 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00270 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99939 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46984 * 59.99414 * 17 15 13 19 19 H 1.48503 * 109.47123 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46672 * 299.99824 * 17 15 13 21 21 C 1.47582 * 91.05516 * 24.55102 * 8 7 6 22 22 C 1.46954 * 110.88178 * 59.31914 * 5 4 3 23 23 C 1.46958 * 110.99701 * 123.80039 * 2 1 3 24 24 H 1.09001 * 109.46324 * 60.00228 * 1 2 3 25 25 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47029 * 300.00106 * 1 2 3 27 27 H 1.09005 * 109.48514 * 63.21810 * 3 2 1 28 28 H 1.08994 * 109.51137 * 303.16715 * 3 2 1 29 29 H 1.09004 * 109.48757 * 181.63451 * 4 3 2 30 30 H 1.08996 * 109.48910 * 61.56935 * 4 3 2 31 31 H 1.08994 * 112.94649 * 296.31538 * 6 5 4 32 32 H 1.08999 * 113.76883 * 336.35461 * 7 6 5 33 33 H 1.09000 * 113.76742 * 107.74781 * 7 6 5 34 34 H 1.09005 * 109.47077 * 300.00864 * 11 9 8 35 35 H 1.09006 * 109.46537 * 60.00224 * 11 9 8 36 36 H 1.09000 * 109.47150 * 300.00712 * 12 11 9 37 37 H 1.08999 * 109.46951 * 59.99766 * 12 11 9 38 38 H 0.97002 * 120.00037 * 180.02562 * 16 15 13 39 39 H 1.09001 * 113.77141 * 221.15493 * 21 8 7 40 40 H 1.08999 * 113.86948 * 89.76448 * 21 8 7 41 41 H 1.09005 * 109.48514 * 60.64808 * 22 5 4 42 42 H 1.08998 * 109.49048 * 180.70699 * 22 5 4 43 43 H 1.08996 * 109.48921 * 296.78021 * 23 2 1 44 44 H 1.09001 * 109.49184 * 56.82204 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0802 5 7 4.0501 0.5657 1.0599 6 6 5.5191 0.5657 1.0600 7 6 6.1388 0.1181 2.3962 8 7 7.0994 1.2248 2.2037 9 6 8.3513 1.4741 2.6365 10 8 8.9146 2.4963 2.3067 11 6 9.0511 0.4829 3.5302 12 6 10.4480 1.0036 3.8741 13 6 11.1480 0.0121 4.7673 14 1 10.6465 -0.8983 5.0607 15 6 12.4282 0.2676 5.2107 16 7 13.0387 1.3765 4.8538 17 14 13.2957 -0.9612 6.3185 18 1 13.4126 -2.2643 5.6161 19 1 14.6516 -0.4557 6.6521 20 1 12.5125 -1.1405 7.5674 21 6 6.1389 1.9456 1.3459 22 6 3.5234 -0.8062 1.0599 23 6 1.9956 -0.7632 1.1401 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6938 1.8773 0.9174 28 1 1.6015 1.9132 -0.8600 29 1 3.9178 2.3448 -0.0511 30 1 3.8254 0.8479 -1.0105 31 1 5.9441 0.0656 0.1897 32 1 5.4792 0.2529 3.2534 33 1 6.5940 -0.8717 2.3596 34 1 8.4766 0.3517 4.4472 35 1 9.1363 -0.4739 3.0148 36 1 11.0226 1.1352 2.9572 37 1 10.3624 1.9603 4.3894 38 1 13.9395 1.5561 5.1655 39 1 6.5942 2.4122 0.4723 40 1 5.4787 2.6191 1.8923 41 1 3.8253 -1.3116 0.1425 42 1 3.9177 -1.3471 1.9201 43 1 1.6937 -0.2821 2.0704 44 1 1.6010 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262172833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = 9.513216 kcal Electronic energy + Delta-G solvation = -21955.098676 eV Core-core repulsion = 18715.562652 eV Total energy + Delta-G solvation = -3239.536024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44847 -39.04908 -37.43267 -34.79935 -33.43120 -31.34584 -31.08053 -29.53941 -27.50324 -26.44054 -25.24809 -23.96222 -23.67081 -21.70622 -20.50899 -20.10232 -18.57660 -17.10830 -16.82590 -15.91846 -15.60688 -15.46306 -15.36680 -15.11618 -14.69208 -14.65781 -14.38335 -14.28698 -13.09272 -12.92122 -12.83766 -12.69824 -12.64369 -12.32142 -12.17690 -12.05465 -11.82945 -11.61959 -11.40315 -11.15508 -11.00287 -10.89821 -10.70076 -10.60078 -9.93339 -9.64290 -9.16788 -9.00047 -8.84572 -8.65425 -8.43974 -8.29548 -5.94292 -3.98872 3.00014 3.20921 3.35547 3.40034 3.41932 3.53150 3.65458 4.09370 4.47831 4.49424 4.64532 4.80047 4.82204 4.93712 5.01233 5.02893 5.15001 5.16043 5.17948 5.25666 5.40311 5.42125 5.44166 5.45910 5.51291 5.55624 5.60417 5.62187 5.67157 5.87610 6.12047 6.25753 6.34410 6.54611 6.54884 6.73693 6.79153 6.92297 7.75652 7.87897 8.01949 8.09285 8.40052 8.76172 9.09253 9.64402 11.16659 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041285 B = 0.002694 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.054727 B =10390.758921 C =10954.936685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.056 3.944 5 N -0.529 5.529 6 C 0.041 3.959 7 C 0.117 3.883 8 N -0.654 5.654 9 C 0.536 3.464 10 O -0.533 6.533 11 C -0.122 4.122 12 C 0.037 3.963 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.116 3.884 22 C 0.056 3.944 23 C 0.057 3.943 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.726 -4.347 -10.156 28.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.072 4.072 5 N -0.254 5.254 6 C -0.068 4.068 7 C -0.006 4.006 8 N -0.393 5.393 9 C 0.327 3.673 10 O -0.407 6.407 11 C -0.161 4.161 12 C -0.001 4.001 13 C -0.565 4.565 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.007 4.007 22 C -0.072 4.072 23 C -0.071 4.071 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.993 -3.633 -10.232 28.169 hybrid contribution 0.391 -0.654 0.633 0.991 sum -25.602 -4.287 -9.599 27.676 Atomic orbital electron populations 1.22341 0.87127 1.02100 1.00722 1.62166 1.07888 1.14117 1.43042 1.22170 0.94532 0.89240 1.01171 1.22140 0.94153 0.98889 0.92048 1.62352 1.06278 1.14020 1.42791 1.23755 0.86666 0.98218 0.98189 1.23152 0.88852 0.91973 0.96652 1.50088 1.13139 1.23699 1.52404 1.21331 0.78568 0.87849 0.79507 1.90679 1.64545 1.28292 1.57233 1.21818 1.00190 0.97058 0.97082 1.18913 0.87477 0.96519 0.97172 1.21171 0.99669 1.05353 1.30341 0.92658 1.25029 0.97491 0.95421 0.96464 1.69991 1.13453 1.24448 1.44953 0.86640 0.78738 0.81424 0.81048 1.20251 1.21280 1.20239 1.23024 0.88903 0.94441 0.94309 1.22149 0.94158 0.89388 1.01540 1.22176 0.94559 0.98465 0.91948 0.91366 0.91359 0.95533 0.93825 0.90271 0.89920 0.93737 0.90388 0.89159 0.90019 0.90338 0.90392 0.95815 0.95825 0.92886 0.90560 0.89578 0.93731 0.89818 0.93819 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.60 60.07 0.58 0.72 16 2 N -0.55 -4.14 4.97 -242.76 -1.21 -5.34 16 3 C 0.06 0.42 5.62 -3.77 -0.02 0.40 16 4 C 0.06 0.44 5.52 -3.77 -0.02 0.42 16 5 N -0.53 -4.60 4.66 -228.39 -1.06 -5.66 16 6 C 0.04 0.40 3.34 -69.92 -0.23 0.17 16 7 C 0.12 1.31 7.75 -2.84 -0.02 1.29 16 8 N -0.65 -10.21 3.61 -178.34 -0.64 -10.85 16 9 C 0.54 11.12 8.06 -10.98 -0.09 11.03 16 10 O -0.53 -13.40 16.71 5.56 0.09 -13.31 16 11 C -0.12 -2.60 5.39 -27.89 -0.15 -2.75 16 12 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 13 C -0.53 -15.22 9.11 -34.44 -0.31 -15.53 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.81 13.29 55.43 0.74 -27.07 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.12 1.44 7.78 -2.96 -0.02 1.42 16 22 C 0.06 0.43 5.54 -3.77 -0.02 0.41 16 23 C 0.06 0.41 5.62 -3.77 -0.02 0.39 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 26 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.62 7.49 -51.93 -0.39 0.23 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.58 7.62 -51.93 -0.40 0.18 16 43 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.48 8.13 -51.93 -0.42 0.06 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -34.76 354.74 -10.24 -45.01 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -7.93 Total: -5.46 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.55 Total: 0.47 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -2.18 Total: -48.93 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.76 -10.24 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262172833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.520 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds