Wall clock time and date at job start Tue Mar 31 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46922 * 1 3 3 C 1.47212 * 111.25454 * 2 1 4 4 C 1.50673 * 108.41145 * 143.46544 * 3 2 1 5 5 N 1.47071 * 112.77890 * 85.35031 * 4 3 2 6 6 C 1.46884 * 111.40765 * 105.31244 * 5 4 3 7 7 C 1.50700 * 109.47205 * 66.05150 * 6 5 4 8 8 H 1.08005 * 119.99810 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00314 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99982 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00125 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47428 * 89.99932 * 11 9 7 13 13 H 1.48508 * 109.46930 * 209.99602 * 11 9 7 14 14 H 1.48498 * 109.47132 * 329.99400 * 11 9 7 15 15 C 1.47206 * 116.03371 * 336.32312 * 5 4 3 16 16 C 1.50701 * 114.72945 * 303.66795 * 15 5 4 17 17 C 1.53369 * 109.56117 * 207.98621 * 16 15 5 18 18 C 1.53079 * 109.31059 * 172.84949 * 17 16 15 19 19 C 1.52991 * 108.79919 * 293.13419 * 18 17 16 20 20 C 1.50099 * 110.05817 * 47.22539 * 19 18 17 21 21 O 1.21342 * 118.15428 * 164.18652 * 20 19 18 22 22 N 1.33281 * 123.79758 * 344.05780 * 20 19 18 23 23 C 1.39482 * 111.28125 * 228.94258 * 2 1 3 24 24 H 1.08996 * 109.46989 * 191.05518 * 1 2 3 25 25 H 1.08995 * 109.46750 * 311.05940 * 1 2 3 26 26 H 1.08999 * 109.46455 * 71.05232 * 1 2 3 27 27 H 1.08937 * 110.20974 * 264.12486 * 3 2 1 28 28 H 1.09339 * 109.58252 * 24.15497 * 3 2 1 29 29 H 1.09400 * 108.54060 * 206.06189 * 4 3 2 30 30 H 1.09085 * 108.98925 * 323.53195 * 4 3 2 31 31 H 1.09007 * 109.46924 * 186.04720 * 6 5 4 32 32 H 1.08995 * 109.47554 * 306.04490 * 6 5 4 33 33 H 0.97005 * 120.00472 * 180.02562 * 10 9 7 34 34 H 1.09552 * 108.47996 * 182.65646 * 15 5 4 35 35 H 1.09192 * 109.18614 * 65.90773 * 15 5 4 36 36 H 1.09050 * 109.38486 * 293.00938 * 17 16 15 37 37 H 1.09081 * 109.36300 * 52.80039 * 17 16 15 38 38 H 1.09302 * 109.43583 * 173.73002 * 18 17 16 39 39 H 1.08851 * 110.28090 * 53.68997 * 18 17 16 40 40 H 1.09026 * 109.44324 * 286.92806 * 19 18 17 41 41 H 1.09096 * 109.32326 * 167.31710 * 19 18 17 42 42 H 0.96933 * 117.39827 * 181.65576 * 22 20 19 43 43 H 1.09284 * 109.01340 * 70.76690 * 23 2 1 44 44 H 1.09230 * 108.66882 * 313.06968 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4692 0.0000 0.0000 3 6 2.0029 1.3720 0.0000 4 6 3.2459 1.3991 0.8511 5 7 4.4538 1.0103 0.1074 6 6 5.2932 2.1761 -0.1989 7 6 5.8374 2.7538 1.0822 8 1 5.5845 2.3004 2.0293 9 6 6.6572 3.8616 1.0454 10 7 6.9648 4.4140 -0.1077 11 14 7.3311 4.5780 2.6335 12 1 8.6307 3.9351 2.9545 13 1 7.5293 6.0409 2.4717 14 1 6.3692 4.3279 3.7368 15 6 4.2374 0.1739 -1.0845 16 6 3.4897 -1.1089 -0.8271 17 6 3.9071 -2.1627 -1.8603 18 6 3.2833 -3.5105 -1.4891 19 6 3.9091 -4.0001 -0.1818 20 6 3.9275 -2.8895 0.8278 21 8 4.1152 -3.1768 1.9917 22 7 3.7521 -1.6047 0.5198 23 6 1.9755 -0.8537 -0.9800 24 1 -0.3633 -1.0086 0.1971 25 1 -0.3632 0.6750 0.7749 26 1 -0.3632 0.3337 -0.9720 27 1 2.2368 1.6848 -1.0169 28 1 1.2597 2.0543 0.4215 29 1 3.3802 2.4133 1.2385 30 1 3.1095 0.7280 1.7001 31 1 6.1203 1.8700 -0.8395 32 1 4.6957 2.9294 -0.7122 33 1 7.5419 5.1933 -0.1337 34 1 5.2135 -0.0803 -1.5121 35 1 3.6929 0.7516 -1.8342 36 1 3.5621 -1.8572 -2.8486 37 1 4.9943 -2.2514 -1.8675 38 1 3.4862 -4.2357 -2.2813 39 1 2.2065 -3.4072 -1.3677 40 1 4.9292 -4.3353 -0.3709 41 1 3.3234 -4.8335 0.2090 42 1 3.8064 -0.9612 1.2428 43 1 1.7875 -0.4171 -1.9641 44 1 1.4439 -1.8062 -0.9226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277937145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:23 Heat of formation + Delta-G solvation = -17.346977 kcal Electronic energy + Delta-G solvation = -24058.695568 eV Core-core repulsion = 20817.994799 eV Total energy + Delta-G solvation = -3240.700769 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80664 -38.60182 -36.12279 -35.70156 -32.97998 -32.35049 -31.17013 -29.16015 -27.23868 -27.15657 -25.25672 -23.98605 -22.80521 -21.77319 -21.17900 -19.47610 -18.33749 -16.90938 -16.37085 -15.98798 -15.92276 -15.19276 -15.11408 -14.75445 -14.60635 -14.31160 -13.77254 -13.61402 -13.45752 -13.11386 -12.87720 -12.51236 -12.37098 -12.03558 -11.86039 -11.72899 -11.51995 -11.19895 -11.16236 -10.97529 -10.94540 -10.81309 -10.59126 -10.51852 -10.17150 -9.82615 -9.41846 -9.23100 -8.65955 -8.44972 -8.07471 -7.11026 -6.04349 -4.05784 3.01632 3.32912 3.39002 3.43111 3.61089 3.96785 4.37523 4.52335 4.58395 4.72067 4.75089 4.84853 5.02175 5.22244 5.27026 5.29897 5.33512 5.42026 5.45761 5.51723 5.62558 5.66217 5.71737 5.76970 5.78829 5.82037 5.82943 5.87609 6.01838 6.12093 6.24067 6.41199 6.77030 7.13291 7.22736 7.28345 7.37900 7.49651 7.81290 7.89876 8.10727 8.18038 8.52681 8.68658 9.02941 9.59126 11.05827 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.005400 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.398207 B = 5184.189157 C = 5676.857196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.563 5.563 3 C 0.044 3.956 4 C 0.071 3.929 5 N -0.557 5.557 6 C 0.206 3.794 7 C -0.506 4.506 8 H 0.065 0.935 9 C 0.056 3.944 10 N -0.900 5.900 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.066 3.934 16 C 0.179 3.821 17 C -0.125 4.125 18 C -0.121 4.121 19 C -0.135 4.135 20 C 0.514 3.486 21 O -0.573 6.573 22 N -0.675 5.675 23 C 0.073 3.927 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.020 0.980 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.027 0.973 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.413 0.587 43 H 0.021 0.979 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.735 -12.126 -6.524 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.287 5.287 3 C -0.084 4.084 4 C -0.057 4.057 5 N -0.282 5.282 6 C 0.081 3.919 7 C -0.545 4.545 8 H 0.083 0.917 9 C -0.145 4.145 10 N -0.540 5.540 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.198 1.198 15 C -0.063 4.063 16 C 0.090 3.910 17 C -0.163 4.163 18 C -0.159 4.159 19 C -0.175 4.175 20 C 0.300 3.700 21 O -0.454 6.454 22 N -0.327 5.327 23 C -0.058 4.058 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.008 0.992 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.254 0.746 43 H 0.039 0.961 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.169 -12.697 -5.520 17.789 hybrid contribution -0.245 1.619 -0.450 1.698 sum -11.414 -11.078 -5.970 16.989 Atomic orbital electron populations 1.22293 0.86668 1.02027 0.99859 1.57709 1.06908 1.12234 1.51892 1.22322 0.98619 0.87167 1.00247 1.21774 0.86040 1.02032 0.95897 1.60251 1.18405 1.24886 1.24693 1.19659 0.90804 0.84517 0.96883 1.21188 1.28836 1.11222 0.93207 0.91728 1.24973 0.96419 0.96819 0.96337 1.69955 1.37036 1.22557 1.24412 0.86501 0.79496 0.77905 0.83540 1.20642 1.21415 1.19780 1.21763 0.99566 0.92163 0.92838 1.20307 0.93460 0.93963 0.83270 1.21955 1.02054 0.93923 0.98402 1.21625 1.00507 0.96814 0.96943 1.21607 1.03730 0.97459 0.94697 1.20015 0.76232 0.84213 0.89540 1.90750 1.51315 1.82829 1.20477 1.45426 1.69481 1.07482 1.10303 1.21350 0.95396 0.96823 0.92253 0.91924 0.91386 0.96162 0.93906 0.90900 0.89950 0.91671 0.95501 0.99218 0.92956 0.91036 0.95469 0.90064 0.90182 0.90788 0.91127 0.88560 0.88754 0.74638 0.96117 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 9.46 60.08 0.57 0.99 16 2 N -0.56 -7.52 3.91 -248.69 -0.97 -8.49 16 3 C 0.04 0.66 5.34 -4.82 -0.03 0.63 16 4 C 0.07 1.30 4.85 -4.90 -0.02 1.27 16 5 N -0.56 -11.20 3.77 -238.01 -0.90 -12.10 16 6 C 0.21 5.11 4.71 -4.98 -0.02 5.09 16 7 C -0.51 -13.83 8.17 -34.44 -0.28 -14.11 16 8 H 0.06 1.77 7.67 -52.48 -0.40 1.37 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 11 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.07 1.08 4.12 -4.81 -0.02 1.06 16 16 C 0.18 2.41 0.75 -132.41 -0.10 2.31 16 17 C -0.12 -1.28 4.56 -26.50 -0.12 -1.40 16 18 C -0.12 -1.06 5.91 -26.69 -0.16 -1.22 16 19 C -0.13 -1.50 6.04 -28.18 -0.17 -1.67 16 20 C 0.51 8.25 7.71 -11.94 -0.09 8.15 16 21 O -0.57 -11.74 17.77 5.50 0.10 -11.64 16 22 N -0.67 -10.74 4.47 -48.77 -0.22 -10.95 16 23 C 0.07 0.89 3.73 -6.95 -0.03 0.87 16 24 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 25 H 0.07 0.70 7.78 -51.93 -0.40 0.29 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.68 6.50 -51.96 -0.34 0.34 16 28 H 0.07 0.99 7.53 -51.74 -0.39 0.60 16 29 H 0.08 1.68 6.86 -51.70 -0.35 1.33 16 30 H 0.07 1.21 6.69 -51.88 -0.35 0.87 16 31 H 0.03 0.72 7.84 -51.92 -0.41 0.31 16 32 H -0.01 -0.26 8.13 -51.93 -0.42 -0.69 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.07 1.21 7.40 -51.62 -0.38 0.83 16 35 H 0.03 0.45 6.35 -51.82 -0.33 0.12 16 36 H 0.08 0.70 8.12 -51.90 -0.42 0.27 16 37 H 0.08 0.86 7.88 -51.88 -0.41 0.45 16 38 H 0.07 0.49 8.17 -51.76 -0.42 0.07 16 39 H 0.07 0.60 6.26 -52.01 -0.33 0.27 16 40 H 0.10 0.98 8.14 -51.91 -0.42 0.56 16 41 H 0.09 0.95 8.15 -51.87 -0.42 0.53 16 42 H 0.41 7.67 5.74 -40.84 -0.23 7.44 16 43 H 0.02 0.25 7.93 -51.77 -0.41 -0.16 16 44 H 0.07 0.80 5.94 -51.80 -0.31 0.49 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -31.42 328.45 -9.02 -40.45 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.13 Total: 3.31 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -0.57 Total: 3.42 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -1.35 Total: -57.06 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.10 Total: -11.64 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.42 -9.02 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277937145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.099 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds