Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47087 * 2 1 4 4 N 1.46501 * 109.47085 * 119.99828 * 2 1 3 5 5 C 1.34777 * 120.00216 * 85.00164 * 4 2 1 6 6 O 1.21586 * 119.99855 * 354.88458 * 5 4 2 7 7 N 1.34776 * 120.00104 * 174.88058 * 5 4 2 8 8 C 1.47015 * 120.28833 * 5.29631 * 7 5 4 9 9 C 1.54140 * 108.03574 * 228.75476 * 8 7 5 10 10 H 1.08996 * 112.95695 * 173.97700 * 9 8 7 11 11 C 1.55424 * 106.37594 * 299.58576 * 9 8 7 12 12 C 1.55182 * 100.67876 * 73.99534 * 11 9 8 13 13 H 1.08997 * 112.48942 * 162.06824 * 12 11 9 14 14 C 1.46985 * 120.28370 * 185.01718 * 7 5 4 15 15 N 1.48146 * 104.30649 * 39.91611 * 12 11 9 16 16 C 1.46902 * 110.99899 * 211.95193 * 15 12 11 17 17 C 1.50692 * 109.47366 * 304.21923 * 16 15 12 18 18 H 1.08006 * 119.99989 * 355.78387 * 17 16 15 19 19 C 1.37875 * 120.00395 * 175.78969 * 17 16 15 20 20 N 1.31513 * 120.00042 * 185.76302 * 19 17 16 21 21 Si 1.86798 * 120.00035 * 5.76038 * 19 17 16 22 22 H 1.48498 * 109.47098 * 89.99788 * 21 19 17 23 23 H 1.48495 * 109.47292 * 210.00094 * 21 19 17 24 24 H 1.48497 * 109.47094 * 330.00353 * 21 19 17 25 25 C 1.47466 * 108.26232 * 334.01756 * 15 12 11 26 26 H 1.09008 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47119 * 60.00003 * 1 2 3 28 28 H 1.08995 * 109.47121 * 299.99772 * 1 2 3 29 29 H 1.08999 * 109.46948 * 239.99767 * 2 1 3 30 30 H 1.08999 * 109.47416 * 60.00054 * 3 2 1 31 31 H 1.09002 * 109.47332 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46945 * 299.99970 * 3 2 1 33 33 H 0.97001 * 119.99830 * 264.99684 * 4 2 1 34 34 H 1.08999 * 109.75040 * 348.38873 * 8 7 5 35 35 H 1.08997 * 109.75206 * 109.11862 * 8 7 5 36 36 H 1.08996 * 111.17632 * 191.85420 * 11 9 8 37 37 H 1.09002 * 111.17121 * 316.14200 * 11 9 8 38 38 H 1.09009 * 109.70543 * 251.26417 * 14 7 5 39 39 H 1.08996 * 109.70720 * 11.87026 * 14 7 5 40 40 H 1.09007 * 109.47000 * 64.21586 * 16 15 12 41 41 H 1.09003 * 109.47136 * 184.21535 * 16 15 12 42 42 H 0.97008 * 120.00016 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.96689 * 241.66853 * 25 15 12 44 44 H 1.08997 * 109.96339 * 120.41983 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -2.0322 1.1945 6 8 1.7712 -2.6777 0.2352 7 7 2.6926 -2.6582 2.2561 8 6 3.0425 -1.8989 3.4654 9 6 4.4815 -2.2780 3.8672 10 1 4.8622 -1.6823 4.6968 11 6 4.4706 -3.8073 4.1445 12 6 4.3834 -4.3612 2.6975 13 1 4.6729 -5.4102 2.6345 14 6 2.9372 -4.1070 2.2171 15 7 5.2788 -3.4792 1.9133 16 6 4.7928 -3.3268 0.5354 17 6 4.6416 -4.6861 -0.0972 18 1 4.9465 -5.5701 0.4431 19 6 4.1141 -4.8013 -1.3658 20 7 3.8765 -5.9910 -1.8737 21 14 3.7367 -3.2677 -2.3633 22 1 4.9301 -2.8911 -3.1627 23 1 2.5958 -3.5381 -3.2745 24 1 3.3843 -2.1547 -1.4457 25 6 5.3539 -2.1735 2.5946 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 2.2491 -0.1822 1.9894 34 1 2.9875 -0.8302 3.2580 35 1 2.3555 -2.1540 4.2722 36 1 5.3915 -4.1254 4.6331 37 1 3.5970 -4.0950 4.7295 38 1 2.2332 -4.6165 2.8752 39 1 2.8181 -4.4726 1.1972 40 1 3.8273 -2.8209 0.5445 41 1 5.5070 -2.7363 -0.0386 42 1 3.5050 -6.0720 -2.7661 43 1 4.9678 -1.3904 1.9421 44 1 6.3862 -1.9552 2.8679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277940502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = 17.133553 kcal Electronic energy + Delta-G solvation = -25019.731765 eV Core-core repulsion = 21780.526184 eV Total energy + Delta-G solvation = -3239.205581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03598 -38.61606 -35.71663 -34.30532 -32.88726 -31.48028 -31.23486 -29.76212 -27.19319 -27.11522 -24.82989 -24.60345 -22.00459 -21.37434 -20.36974 -19.59821 -18.85379 -17.75630 -16.82300 -15.99731 -15.50594 -14.84341 -14.82689 -14.22866 -13.98269 -13.70944 -13.68932 -13.48928 -13.08192 -12.72594 -12.47625 -12.34147 -12.27167 -11.96253 -11.90311 -11.81731 -11.44599 -11.27640 -10.99079 -10.91049 -10.64719 -10.40642 -10.22018 -10.20609 -9.85432 -9.62600 -9.43581 -9.06403 -8.70711 -8.29461 -8.17134 -7.11816 -5.88383 -3.84064 3.01146 3.48315 3.58848 3.69777 3.76921 4.14031 4.68695 4.72022 4.80709 4.90694 5.02659 5.12027 5.16046 5.28323 5.42681 5.48472 5.50534 5.56486 5.64825 5.68456 5.72100 5.77478 5.94341 5.96938 6.03933 6.12574 6.16711 6.21166 6.34216 6.35290 6.41867 6.54528 6.82957 6.86488 6.99667 7.08581 7.35388 7.43297 7.70525 8.03896 8.14178 8.36714 8.79595 9.12148 9.16713 9.76870 11.23390 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.011384 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.831755 B = 2458.895212 C = 3980.868604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 C -0.158 4.158 4 N -0.751 5.751 5 C 0.707 3.293 6 O -0.558 6.558 7 N -0.625 5.625 8 C 0.116 3.884 9 C -0.129 4.129 10 H 0.093 0.907 11 C -0.125 4.125 12 C 0.081 3.919 13 H 0.105 0.895 14 C 0.095 3.905 15 N -0.512 5.512 16 C 0.136 3.864 17 C -0.509 4.509 18 H 0.075 0.925 19 C 0.080 3.920 20 N -0.902 5.902 21 Si 0.884 3.116 22 H -0.294 1.294 23 H -0.294 1.294 24 H -0.251 1.251 25 C 0.052 3.948 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.388 0.612 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.137 0.863 40 H 0.034 0.966 41 H 0.007 0.993 42 H 0.260 0.740 43 H 0.042 0.958 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 14.005 12.071 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 C -0.216 4.216 4 N -0.410 5.410 5 C 0.409 3.591 6 O -0.433 6.433 7 N -0.363 5.363 8 C -0.008 4.008 9 C -0.149 4.149 10 H 0.112 0.888 11 C -0.164 4.164 12 C -0.029 4.029 13 H 0.123 0.877 14 C -0.028 4.028 15 N -0.236 5.236 16 C 0.010 3.990 17 C -0.547 4.547 18 H 0.093 0.907 19 C -0.122 4.122 20 N -0.540 5.540 21 Si 0.713 3.287 22 H -0.222 1.222 23 H -0.220 1.220 24 H -0.175 1.175 25 C -0.077 4.077 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.223 0.777 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.155 0.845 40 H 0.051 0.949 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.766 13.206 11.104 17.660 hybrid contribution -0.827 1.432 -0.188 1.664 sum -4.593 14.638 10.916 18.829 Atomic orbital electron populations 1.22185 0.95810 1.02757 1.01202 1.20768 0.93700 0.92112 0.88822 1.22061 1.01754 0.95354 1.02391 1.45431 1.72949 1.05754 1.16827 1.15681 0.78698 0.81661 0.83052 1.90988 1.53858 1.64491 1.33961 1.47419 1.65716 1.09318 1.13891 1.21821 0.95845 0.95129 0.88032 1.23191 0.95146 0.97749 0.98776 0.88841 1.22964 1.01564 0.94132 0.97697 1.23168 0.90594 0.98870 0.90221 0.87719 1.22744 0.95722 0.77457 1.06860 1.63697 1.48521 1.07880 1.03537 1.20750 0.95106 0.98686 0.84450 1.20884 1.41250 0.91925 1.00658 0.90705 1.24778 0.94303 0.95595 0.97516 1.69913 1.44722 1.22585 1.16820 0.86736 0.76448 0.85562 0.79942 1.22187 1.22018 1.17519 1.22797 0.98204 0.93402 0.93332 0.91767 0.92126 0.93033 0.89434 0.92418 0.92072 0.91121 0.77650 0.91404 0.91958 0.91099 0.91329 0.93529 0.84520 0.94879 0.97452 0.92998 0.93942 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 37.16 0.35 -1.72 16 2 C 0.15 2.17 3.15 -67.93 -0.21 1.96 16 3 C -0.16 -1.65 9.38 37.16 0.35 -1.30 16 4 N -0.75 -11.36 4.98 -58.68 -0.29 -11.65 16 5 C 0.71 13.74 6.25 -86.92 -0.54 13.20 16 6 O -0.56 -13.51 12.22 5.29 0.06 -13.45 16 7 N -0.63 -10.98 1.79 -176.97 -0.32 -11.29 16 8 C 0.12 1.48 5.68 -3.17 -0.02 1.46 16 9 C -0.13 -1.66 4.32 -87.87 -0.38 -2.04 16 10 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.13 -1.75 6.16 -24.29 -0.15 -1.90 16 12 C 0.08 1.52 3.49 -65.08 -0.23 1.29 16 13 H 0.11 2.09 7.73 -51.93 -0.40 1.69 16 14 C 0.10 1.89 5.13 -2.99 -0.02 1.87 16 15 N -0.51 -10.77 5.24 -223.23 -1.17 -11.94 16 16 C 0.14 3.41 2.93 -4.98 -0.01 3.40 16 17 C -0.51 -14.77 7.28 -34.44 -0.25 -15.02 16 18 H 0.07 2.33 7.33 -52.48 -0.38 1.94 16 19 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 20 N -0.90 -28.81 13.96 55.43 0.77 -28.04 16 21 Si 0.88 24.09 26.28 -169.99 -4.47 19.63 16 22 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 23 H -0.29 -8.16 7.11 56.52 0.40 -7.76 16 24 H -0.25 -6.64 5.07 56.52 0.29 -6.35 16 25 C 0.05 0.86 5.95 -2.65 -0.02 0.85 16 26 H 0.06 1.01 8.09 -51.92 -0.42 0.59 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.59 7.22 -51.93 -0.38 1.21 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.39 4.64 6.06 -40.82 -0.25 4.39 16 34 H 0.07 0.73 5.61 -51.93 -0.29 0.44 16 35 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.85 7.89 -51.93 -0.41 0.44 16 38 H 0.05 0.83 8.12 -51.92 -0.42 0.41 16 39 H 0.14 3.46 4.56 -51.93 -0.24 3.22 16 40 H 0.03 0.82 1.49 -51.93 -0.08 0.74 16 41 H 0.01 0.20 7.63 -51.93 -0.40 -0.20 16 42 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 43 H 0.04 0.75 7.21 -51.93 -0.37 0.37 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -34.61 318.90 -8.92 -43.52 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.09 Total: 4.03 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.22 Total: 4.39 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -1.01 Total: -62.93 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.06 Total: -13.45 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.47 Total: 19.63 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.61 -8.92 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.654 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds